[Users] Problem with reproducing the NsNsToHMNS

hassan.khalvati at physics.sharif.edu hassan.khalvati at physics.sharif.edu
Wed Oct 24 10:34:03 CDT 2018 

Dear all,

I need some guidance on reproducing the NsNsToHMNS which is provided in
the gallery section of ET's website.
but there are a bunch of warnings during the simulation.

I would be grateful if anyone could possibly tell me what is the minimum
limit on core numbers for the NsNs and also check the warnings below.

I tried with 4  procs at first , but now I am trying on 28 procs. but
there are same warnings.
I don't know if I have to take them serious or not !
Because even with these warnings, the simulation is still running...


Gratefully,
Hassan




*****Here are all warnings***** :


Warning: thorn CoordBase already scheduled for activation



WARNING level 3 from host compute-0-46.local process 0
  while executing schedule bin (none), routine (no thorn)::(no routine)
  in thorn IOUtil, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/IOUtil/CheckpointRecovery.cc:730:
  -> No HDF5 checkpoint files with basefilename 'checkpoint.chkpt' found
in recovery directory 'NsNs'






Formaline::Formaline_RegisterWarnings: [meta] Register to receive warnings
and info messages from the flesh





WARNING level 3 from host compute-0-46.local process 0
  while executing schedule bin CCTK_STARTUP, routine
TerminationTrigger::TerminationTrigger_StartSignalHandler
  in thorn TerminationTrigger, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/TerminationTrigger/signal.c:64:
  -> Could not register parameter change monitor for 'signal_numbers'
INFO (Vectors): Using vector size 2 for architecture SSE2 (64-bit precision)






INFO (Formaline): Writing tarballs with the Cactus sources into the
directory "NsNs/cactus-source"
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:15:
  -> Forcing ML_BSSN::initial_boundary_condition="extrapolate-gammas"
because ML_BSSN::my_initial_boundary_condition="extrapolate-gammas"
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:28:
  -> Forcing ML_BSSN::rhs_boundary_condition="NewRad" because
ML_BSSN::my_rhs_boundary_condition="NewRad"
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:47:
  -> Forcing ML_BSSN::epsDiss=0.0 because ML_BSSN::apply_dissipation="never"
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:116:
  -> Forcing ML_BSSN::advectLapse=1 because ML_BSSN::LapseAdvectionCoeff=1.0
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:134:
  -> Forcing ML_BSSN::advectShift=1 because ML_BSSN::ShiftAdvectionCoeff=1.0
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:150:
  -> Parameter ML_BSSN::my_initial_data is outdated; please update the
parameter file. Do not use this parameter, and set up initial conditions
via ADMBase as usual.
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:157:
  -> Parameter ML_BSSN::my_initial_boundary_condition is outdated; please
update the parameter file. Do not use this parameter, and set up initial
boundary conditions as usual.
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:164:
  -> Parameter ML_BSSN::my_rhs_boundary_condition is outdated; please
update the parameter file. Do not use this parameter, and set up RHS
boundary conditions as usual.
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:171:
  -> Parameter ML_BSSN::my_boundary_condition is outdated; please update
the parameter file. Do not use this parameter, and set up RHS boundary
conditions as usual.
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:198:
  -> Parameter ML_BSSN::LapseAdvectionCoeff is outdated; please update the
parameter file. Instead of using this parameter, you should set
ML_BSSN::advectLapse.
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:204:
  -> Parameter ML_BSSN::ShiftAdvectionCoeff is outdated; please update the
parameter file. Instead of using this parameter, you should set
ML_BSSN::advectShift.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:15:
  -> Forcing ML_BSSN::initial_boundary_condition="extrapolate-gammas"
because ML_BSSN::my_initial_boundary_condition="extrapolate-gammas"
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:28:
  -> Forcing ML_BSSN::rhs_boundary_condition="NewRad" because
ML_BSSN::my_rhs_boundary_condition="NewRad"
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:47:
  -> Forcing ML_BSSN::epsDiss=0.0 because ML_BSSN::apply_dissipation="never"
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:15:
  -> Forcing ML_BSSN::initial_boundary_condition="extrapolate-gammas"
because ML_BSSN::my_initial_boundary_condition="extrapolate-gammas"
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:28:
  -> Forcing ML_BSSN::rhs_boundary_condition="NewRad" because
ML_BSSN::my_rhs_boundary_condition="NewRad"
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:47:
  -> Forcing ML_BSSN::epsDiss=0.0 because ML_BSSN::apply_dissipation="never"
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:116:
  -> Forcing ML_BSSN::advectLapse=1 because ML_BSSN::LapseAdvectionCoeff=1.0
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:116:
  -> Forcing ML_BSSN::advectLapse=1 because ML_BSSN::LapseAdvectionCoeff=1.0
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:134:
  -> Forcing ML_BSSN::advectShift=1 because ML_BSSN::ShiftAdvectionCoeff=1.0
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_WRAGH, routine
ML_BSSN_Helper::ML_BSSN_ParamCompat
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:134:
  -> Forcing ML_BSSN::advectShift=1 because ML_BSSN::ShiftAdvectionCoeff=1.0
INFO (MoL): Using Runge-Kutta 4 as the time integrator.
INFO (SymBase): Symmetry on lower x-face: rotating_symmetry_180
INFO (SymBase): Symmetry on lower z-face: reflection_symmetry
INFO (MoL): The maximum number of evolved variables is 1250. 30 are
registered.
INFO (MoL): The maximum number of slow evolved variables is 1250. 0 are
registered.
INFO (MoL): The maximum number of constrained variables is 1250. 37 are
registered.
INFO (MoL): The maximum number of SandR variables is 1250. 0 are registered.
INFO (MoL): The maximum number of evolved array variables is 1250. 0 are
registered.
INFO (MoL): The maximum number of constrained array variables is 1250. 0
are registered.
INFO (MoL): The maximum number of SandR array variables is 1250. 0 are
registered.
INFO (MoL): The maximum size of any array variables is 0.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:150:
  -> Parameter ML_BSSN::my_initial_data is outdated; please update the
parameter file. Do not use this parameter, and set up initial conditions
via ADMBase as usual.
WARNING level 1 from host compute-0-46.local process 0
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:150:
  -> Parameter ML_BSSN::my_initial_data is outdated; please update the
parameter file. Do not use this parameter, and set up initial conditions
via ADMBase as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:157:
  -> Parameter ML_BSSN::my_initial_boundary_condition is outdated; please
update the parameter file. Do not use this parameter, and set up initial
boundary conditions as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:164:
  -> Parameter ML_BSSN::my_rhs_boundary_condition is outdated; please
update the parameter file. Do not use this parameter, and set up RHS
boundary conditions as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:171:
  -> Parameter ML_BSSN::my_boundary_condition is outdated; please update
the parameter file. Do not use this parameter, and set up RHS boundary
conditions as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:198:
  -> Parameter ML_BSSN::LapseAdvectionCoeff is outdated; please update the
parameter file. Instead of using this parameter, you should set
ML_BSSN::advectLapse.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:204:
  -> Parameter ML_BSSN::ShiftAdvectionCoeff is outdated; please update the
parameter file. Instead of using this parameter, you should set
ML_BSSN::advectShift.
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:157:
  -> Parameter ML_BSSN::my_initial_boundary_condition is outdated; please
update the parameter file. Do not use this parameter, and set up initial
boundary conditions as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:164:
  -> Parameter ML_BSSN::my_rhs_boundary_condition is outdated; please
update the parameter file. Do not use this parameter, and set up RHS
boundary conditions as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:171:
  -> Parameter ML_BSSN::my_boundary_condition is outdated; please update
the parameter file. Do not use this parameter, and set up RHS boundary
conditions as usual.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:198:
  -> Parameter ML_BSSN::LapseAdvectionCoeff is outdated; please update the
parameter file. Instead of using this parameter, you should set
ML_BSSN::advectLapse.
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin CCTK_PARAMCHECK, routine
ML_BSSN_Helper::ML_BSSN_ParamCheck
  in thorn ML_BSSN_Helper, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:204:
  -> Parameter ML_BSSN::ShiftAdvectionCoeff is outdated; please update the
parameter file. Instead of using this parameter, you should set
ML_BSSN::advectShift.








WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin Hydro_Analysis_LocationSearch, routine
Hydro_Analysis::Hydro_Analysis_LocationSearch_Combine
  in thorn Hydro_Analysis, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/Hydro_Analysis/Hydro_Analysis.c:199:
  -> Found more than one (2) identical maximum, using average location
(15.1875,0,0).
WARNING level 1 from host compute-0-46.local process 1
  while executing schedule bin Hydro_Analysis_LocationSearch, routine
Hydro_Analysis::Hydro_Analysis_LocationSearch_Combine
  in thorn Hydro_Analysis, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/Hydro_Analysis/Hydro_Analysis.c:199:
  -> Found more than one (2) identical maximum, using average location
(15.1875,0,0).
WARNING level 1 from host compute-0-46.local process 0
  while executing schedule bin Hydro_Analysis_LocationSearch, routine
Hydro_Analysis::Hydro_Analysis_LocationSearch_Combine
  in thorn Hydro_Analysis, file
/home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/Hydro_Analysis/Hydro_Analysis.c:199:
  -> Found more than one (2) identical maximum, using average location
(15.1875,0,0).
INFO (NSTracker): Found star at (15.1875,0,0)
INFO (CarpetIOHDF5):
---------------------------------------------------------
INFO (CarpetIOHDF5): Dumping initial checkpoint at iteration 0, simulation
time 0
INFO (CarpetIOHDF5):
---------------------------------------------------------
WARNING level 2 from host compute-0-46.local process 0
  while executing schedule bin CCTK_ANALYSIS, routine
QuasiLocalMeasures::qlm_calculate
  in thorn QuasiLocalMeasures, file qlm_calculate.F90:130:
  -> There were not enough past time levels available for accurate
calculations
INFO (TimerReport): Timer Report at iteration 0 time 0
INFO (TimerReport): Top timers at iteration 0 time 0





-----------------------------------
Hassan Khalvati
Master Student
Department of Physics
Sharif University of Technology
Tehran, Azadi
Hassan.khalvati at physics.sharif.edu

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