[Users] Problem with reproducing the NsNsToHMNS

Wed Oct 24 11:36:13 CDT 2018

Dear Roland
Thank you for your prompt response.
The simulation is still going on and there is no level 0 warning.

> Hello Hassan,
>
> all warnings that are level 1 and higher can be ignored (high level
> means a lower priority warning).
>
> Only level 0 are actually errors. Level 2 and higher are usually "stuff
> that we'd want to let you know but that will not cause any averse
> effects", such as the " No HDF5 checkpoint files with basefilename
> 'checkpoint.chkpt' found" that is output for the first segment of a
> simulation.
>
> The one "Could not register parameter change monitor for
> 'signal_numbers'" is a bit more puzzling since this should not happen (it
> is perfectly harmless though).
>
> Does your simulation actually proceed or does it abort with a level 0
> warning or similar issue?
>
> Yours,
> Roland
>
>> Dear all,
>>
>> I need some guidance on reproducing the NsNsToHMNS which is provided in
>> the gallery section of ET's website.
>> but there are a bunch of warnings during the simulation.
>>
>> I would be grateful if anyone could possibly tell me what is the minimum
>> limit on core numbers for the NsNs and also check the warnings below.
>>
>> I tried with 4  procs at first , but now I am trying on 28 procs. but
>> there are same warnings.
>> I don't know if I have to take them serious or not !
>> Because even with these warnings, the simulation is still running...
>>
>>
>> Gratefully,
>> Hassan
>>
>>
>>
>>
>> *****Here are all warnings***** :
>>
>>
>> Warning: thorn CoordBase already scheduled for activation
>>
>>
>>
>> WARNING level 3 from host compute-0-46.local process 0
>>   while executing schedule bin (none), routine (no thorn)::(no routine)
>>   in thorn IOUtil, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/IOUtil/CheckpointRecovery.cc:730:
>>   -> No HDF5 checkpoint files with basefilename 'checkpoint.chkpt' found
>> in recovery directory 'NsNs'
>>
>>
>>
>>
>>
>>
>> Formaline::Formaline_RegisterWarnings: [meta] Register to receive
>> warnings
>> and info messages from the flesh
>>
>>
>>
>>
>>
>> WARNING level 3 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_STARTUP, routine
>> TerminationTrigger::TerminationTrigger_StartSignalHandler
>>   in thorn TerminationTrigger, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/TerminationTrigger/signal.c:64:
>>   -> Could not register parameter change monitor for 'signal_numbers'
>> INFO (Vectors): Using vector size 2 for architecture SSE2 (64-bit
>> precision)
>>
>>
>>
>>
>>
>>
>> INFO (Formaline): Writing tarballs with the Cactus sources into the
>> directory "NsNs/cactus-source"
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:15:
>>   -> Forcing ML_BSSN::initial_boundary_condition="extrapolate-gammas"
>> because ML_BSSN::my_initial_boundary_condition="extrapolate-gammas"
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:28:
>>   -> Forcing ML_BSSN::rhs_boundary_condition="NewRad" because
>> ML_BSSN::my_rhs_boundary_condition="NewRad"
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:47:
>>   -> Forcing ML_BSSN::epsDiss=0.0 because
>> ML_BSSN::apply_dissipation="never"
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:116:
>>   -> Forcing ML_BSSN::advectLapse=1 because
>> ML_BSSN::LapseAdvectionCoeff=1.0
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:134:
>>   -> Forcing ML_BSSN::advectShift=1 because
>> ML_BSSN::ShiftAdvectionCoeff=1.0
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:150:
>>   -> Parameter ML_BSSN::my_initial_data is outdated; please update the
>> parameter file. Do not use this parameter, and set up initial conditions
>> via ADMBase as usual.
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:157:
>>   -> Parameter ML_BSSN::my_initial_boundary_condition is outdated;
>> please
>> update the parameter file. Do not use this parameter, and set up initial
>> boundary conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:164:
>>   -> Parameter ML_BSSN::my_rhs_boundary_condition is outdated; please
>> update the parameter file. Do not use this parameter, and set up RHS
>> boundary conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:171:
>>   -> Parameter ML_BSSN::my_boundary_condition is outdated; please update
>> the parameter file. Do not use this parameter, and set up RHS boundary
>> conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:198:
>>   -> Parameter ML_BSSN::LapseAdvectionCoeff is outdated; please update
>> the
>> parameter file. Instead of using this parameter, you should set
>> ML_BSSN::advectLapse.
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:204:
>>   -> Parameter ML_BSSN::ShiftAdvectionCoeff is outdated; please update
>> the
>> parameter file. Instead of using this parameter, you should set
>> ML_BSSN::advectShift.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:15:
>>   -> Forcing ML_BSSN::initial_boundary_condition="extrapolate-gammas"
>> because ML_BSSN::my_initial_boundary_condition="extrapolate-gammas"
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:28:
>>   -> Forcing ML_BSSN::rhs_boundary_condition="NewRad" because
>> ML_BSSN::my_rhs_boundary_condition="NewRad"
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:47:
>>   -> Forcing ML_BSSN::epsDiss=0.0 because
>> ML_BSSN::apply_dissipation="never"
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:15:
>>   -> Forcing ML_BSSN::initial_boundary_condition="extrapolate-gammas"
>> because ML_BSSN::my_initial_boundary_condition="extrapolate-gammas"
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:28:
>>   -> Forcing ML_BSSN::rhs_boundary_condition="NewRad" because
>> ML_BSSN::my_rhs_boundary_condition="NewRad"
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:47:
>>   -> Forcing ML_BSSN::epsDiss=0.0 because
>> ML_BSSN::apply_dissipation="never"
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:116:
>>   -> Forcing ML_BSSN::advectLapse=1 because
>> ML_BSSN::LapseAdvectionCoeff=1.0
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:116:
>>   -> Forcing ML_BSSN::advectLapse=1 because
>> ML_BSSN::LapseAdvectionCoeff=1.0
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:134:
>>   -> Forcing ML_BSSN::advectShift=1 because
>> ML_BSSN::ShiftAdvectionCoeff=1.0
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_WRAGH, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCompat
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:134:
>>   -> Forcing ML_BSSN::advectShift=1 because
>> ML_BSSN::ShiftAdvectionCoeff=1.0
>> INFO (MoL): Using Runge-Kutta 4 as the time integrator.
>> INFO (SymBase): Symmetry on lower x-face: rotating_symmetry_180
>> INFO (SymBase): Symmetry on lower z-face: reflection_symmetry
>> INFO (MoL): The maximum number of evolved variables is 1250. 30 are
>> registered.
>> INFO (MoL): The maximum number of slow evolved variables is 1250. 0 are
>> registered.
>> INFO (MoL): The maximum number of constrained variables is 1250. 37 are
>> registered.
>> INFO (MoL): The maximum number of SandR variables is 1250. 0 are
>> registered.
>> INFO (MoL): The maximum number of evolved array variables is 1250. 0 are
>> registered.
>> INFO (MoL): The maximum number of constrained array variables is 1250. 0
>> are registered.
>> INFO (MoL): The maximum number of SandR array variables is 1250. 0 are
>> registered.
>> INFO (MoL): The maximum size of any array variables is 0.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:150:
>>   -> Parameter ML_BSSN::my_initial_data is outdated; please update the
>> parameter file. Do not use this parameter, and set up initial conditions
>> via ADMBase as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:150:
>>   -> Parameter ML_BSSN::my_initial_data is outdated; please update the
>> parameter file. Do not use this parameter, and set up initial conditions
>> via ADMBase as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:157:
>>   -> Parameter ML_BSSN::my_initial_boundary_condition is outdated;
>> please
>> update the parameter file. Do not use this parameter, and set up initial
>> boundary conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:164:
>>   -> Parameter ML_BSSN::my_rhs_boundary_condition is outdated; please
>> update the parameter file. Do not use this parameter, and set up RHS
>> boundary conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:171:
>>   -> Parameter ML_BSSN::my_boundary_condition is outdated; please update
>> the parameter file. Do not use this parameter, and set up RHS boundary
>> conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:198:
>>   -> Parameter ML_BSSN::LapseAdvectionCoeff is outdated; please update
>> the
>> parameter file. Instead of using this parameter, you should set
>> ML_BSSN::advectLapse.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:204:
>>   -> Parameter ML_BSSN::ShiftAdvectionCoeff is outdated; please update
>> the
>> parameter file. Instead of using this parameter, you should set
>> ML_BSSN::advectShift.
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:157:
>>   -> Parameter ML_BSSN::my_initial_boundary_condition is outdated;
>> please
>> update the parameter file. Do not use this parameter, and set up initial
>> boundary conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:164:
>>   -> Parameter ML_BSSN::my_rhs_boundary_condition is outdated; please
>> update the parameter file. Do not use this parameter, and set up RHS
>> boundary conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:171:
>>   -> Parameter ML_BSSN::my_boundary_condition is outdated; please update
>> the parameter file. Do not use this parameter, and set up RHS boundary
>> conditions as usual.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:198:
>>   -> Parameter ML_BSSN::LapseAdvectionCoeff is outdated; please update
>> the
>> parameter file. Instead of using this parameter, you should set
>> ML_BSSN::advectLapse.
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_PARAMCHECK, routine
>> ML_BSSN_Helper::ML_BSSN_ParamCheck
>>   in thorn ML_BSSN_Helper, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/ML_BSSN_Helper/Parameters.c:204:
>>   -> Parameter ML_BSSN::ShiftAdvectionCoeff is outdated; please update
>> the
>> parameter file. Instead of using this parameter, you should set
>> ML_BSSN::advectShift.
>>
>>
>>
>>
>>
>>
>>
>>
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin Hydro_Analysis_LocationSearch, routine
>> Hydro_Analysis::Hydro_Analysis_LocationSearch_Combine
>>   in thorn Hydro_Analysis, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/Hydro_Analysis/Hydro_Analysis.c:199:
>>   -> Found more than one (2) identical maximum, using average location
>> (15.1875,0,0).
>> WARNING level 1 from host compute-0-46.local process 1
>>   while executing schedule bin Hydro_Analysis_LocationSearch, routine
>> Hydro_Analysis::Hydro_Analysis_LocationSearch_Combine
>>   in thorn Hydro_Analysis, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/Hydro_Analysis/Hydro_Analysis.c:199:
>>   -> Found more than one (2) identical maximum, using average location
>> (15.1875,0,0).
>> WARNING level 1 from host compute-0-46.local process 0
>>   while executing schedule bin Hydro_Analysis_LocationSearch, routine
>> Hydro_Analysis::Hydro_Analysis_LocationSearch_Combine
>>   in thorn Hydro_Analysis, file
>> /home/hassan.khalvati.physics.sharif/NsNs/Cactus/configs/sim/build/Hydro_Analysis/Hydro_Analysis.c:199:
>>   -> Found more than one (2) identical maximum, using average location
>> (15.1875,0,0).
>> INFO (NSTracker): Found star at (15.1875,0,0)
>> INFO (CarpetIOHDF5):
>> ---------------------------------------------------------
>> INFO (CarpetIOHDF5): Dumping initial checkpoint at iteration 0,
>> simulation
>> time 0
>> INFO (CarpetIOHDF5):
>> ---------------------------------------------------------
>> WARNING level 2 from host compute-0-46.local process 0
>>   while executing schedule bin CCTK_ANALYSIS, routine
>> QuasiLocalMeasures::qlm_calculate
>>   in thorn QuasiLocalMeasures, file qlm_calculate.F90:130:
>>   -> There were not enough past time levels available for accurate
>> calculations
>> INFO (TimerReport): Timer Report at iteration 0 time 0
>> INFO (TimerReport): Top timers at iteration 0 time 0
>>
>>
>>
>>
>>
>> -----------------------------------
>> Hassan Khalvati
>> Master Student
>> Department of Physics
>> Sharif University of Technology
>> Tehran, Azadi
>> Hassan.khalvati at physics.sharif.edu
>>
>>
>>
>>
>>
>>
>>
>>
>> _______________________________________________
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