[Users] Issues with Downloading/Installing the tool kit

[Joe Hellmers]

I see an additional message

[jhellmer at comet-ln2 etk]$ ./GetComponents --verbose https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2018_02/einsteintoolkit.th  > GetComponents.log

Use of uninitialized value $branch in concatenation (.) or string at ./GetComponents line 1559.

I was able to git clone 

git clone https://bitbucket.org/einsteintoolkit/einsteininitialdata.git Cactus/repos/einsteininitialdata

Successfully.  I tried to run GetComponents again to see if it would move the initialdata folder to the arrangements folder and create the symlinks, but I got the following

  1 components checked out.
  252 components updated.

  Unable to process EinsteinInitialData/DistortedBHIVP

Summary of Warnings:

Could not update einsteininitialdata. Could not stash local changes. Error message was 'fatal: unable to create threaded lstat
fatal: unable to create threaded lstat
fatal: unable to create threaded lstat
fatal: unable to create threaded lstat
fatal: unable to create threaded lstat
Cannot save the current worktree state
'.
  Time Elapsed: 0 minutes, 27 seconds

This home directory is on a CentOS 6.10 server.  I was able to do this successfully on an Ubuntu 16 VM.

Joe


> On Sep 1, 2018, at 3:27 PM, Roland Haas <rhaas at illinois.edu> wrote:
> 
> Hello Joe,
> 
> this is probably an issue with the incomplete checkout before. You can
> try and see if adding the --verbose option to GetComponentns gives any
> useful help (in particular you would look out for error messages from
> git).
> 
> Personally I would remove the directories repos/einsteininitialdata and
> arrangements/EinsteinInitialData and re-run GetComponents (or the git
> line that I suggested).
> 
> Yours,
> Roland
> 
>> I’m not sure why put I’m not getting that error anymore.
>> 
>> Now I get this
>> 
>>  Unable to process EinsteinInitialData/DistortedBHIVP
>> 
>> Summary of Warnings:
>> 
>> Could not checkout EinsteinInitialData/DistortedBHIVP, unable to switch to tag . Any existing symlinks to EinsteinInitialData/DistortedBHIVP will be broken
>>  Time Elapsed: 1 minutes, 9 seconds
>> 
>> Am I getting this because I’ve already tried to install once?
>> 
>> Joe Hellmers
>> 
>>> On Aug 6, 2018, at 7:56 AM, Roland Haas <rhaas at illinois.edu> wrote:
>>> 
>>> Hello Joe,
>>> 
>>> sorry for the very long delay in responding. Is this issue still
>>> occuring?
>>> 
>>> If have seen issues like this caused by old versions of OpenSSL
>>> installed on clusters since github's https server by now requires at
>>> least TLS v1.2 and some old clusters only support v1.1. 
>>> 
>>> You can check this by running git manually like so:
>>> 
>>> git clone https://github.com/barrywardell/EinsteinExact.git/ <https://github.com/barrywardell/EinsteinExact.git/>
>>> 
>>> and if it responds like this:
>>> 
>>> error: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version while accessing...
>>> 
>>> then your version of OpenSSL is too old.
>>> 
>>> In that case I suggest to try and see if the cluster offers a newer
>>> version of git or OpenSSL through its module system or, alternatively,
>>> check out the code using GetComponents on your laptop/workstation and
>>> transfer to the cluster using simfactory's sync command eg:
>>> 
>>> cd Cactus
>>> simfactory/bin/sim sync bluewaters
>>> 
>>> Yours,
>>> Roland
>>> 
>>>> I’m loading the toolkit on the Comet Supercomputer at the San Diego Super Computing facility (SDSC).
>>>> 
>>>> When running the command 
>>>> 
>>>> ./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2018_02/einsteintoolkit.th  
>>>> 
>>>> I’m getting the error below at the end.  I’m not sure if these errors are important or not.  If someone would be so kind as to let me know, it would be greatly appreciated.
>>>> 
>>>> Thank,
>>>> Joe Hellmers
>>>> 
>>>> Unable to process EinsteinExact/doc
>>>> Unable to process EinsteinExact/m
>>>> Unable to process EinsteinExact/tests
>>>> Unable to process EinsteinExact/EinsteinExact_Test
>>>> Unable to process EinsteinExact/GaugeWave
>>>> Unable to process EinsteinExact/KerrSchild
>>>> Unable to process EinsteinExact/Minkowski
>>>> Unable to process KrancNumericalTools/GenericFD
>>>> Unable to process EinsteinExact/ModifiedSchwarzschildBL
>>>> Unable to process EinsteinExact/ShiftedGaugeWave
>>>> Unable to process EinsteinExact/Vaidya2
>>>> Unable to process EinsteinInitialData/DistortedBHIVP
>>>> Unable to process GetComponents
>>>> 
>>>> Summary of Warnings:
>>>> 
>>>> Could not checkout module EinsteinExact/doc
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/m
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/tests
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/EinsteinExact_Test
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/GaugeWave
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/KerrSchild
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/Minkowski
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module KrancNumericalTools/GenericFD
>>>> 
>>>> fatal: unable to access 'https://github.com/ianhinder/Kranc.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/ModifiedSchwarzschildBL
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/ShiftedGaugeWave
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout module EinsteinExact/Vaidya2
>>>> 
>>>> fatal: unable to access 'https://github.com/barrywardell/EinsteinExact.git/': SSL connect error
>>>> 
>>>> Could not checkout EinsteinInitialData/DistortedBHIVP, unable to switch to tag . Any existing symlinks to EinsteinInitialData/DistortedBHIVP will be broken
>>>> Could not checkout module GetComponents
>>>> 
>>>> fatal: unable to access 'https://github.com/gridaphobe/CRL.git/': SSL connect error
>>>> 
>>>> Time Elapsed: 1 minutes, 48 seconds
>>>> 
>>> 
>>> 
>>> 
>>> -- 
>>> My email is as private as my paper mail. I therefore support encrypting
>>> and signing email messages. Get my PGP key from http://pgp.mit.edu <http://pgp.mit.edu/> .  
>> 
> 
> 
> 
> -- 
> My email is as private as my paper mail. I therefore support encrypting
> and signing email messages. Get my PGP key from http://pgp.mit.edu .

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