[Users] errors while compiling Einstein toolkit

Mon Aug 26 11:33:20 CDT 2019

Hello Matia. Did you run this command to install the prerequisites?

$(sudo -l sudo) su -c 'apt-get install -y subversion gcc git numactl 
libgsl-dev libpapi-dev python libhwloc-dev make libopenmpi-dev 
libhdf5-openmpi-dev libfftw3-dev libssl-dev liblapack-dev g++ curl 
gfortran patch pkg-config libhdf5-dev libjpeg-turbo?-dev'

Also, what do you see when you type `which mpicc`? Thanks.

--Steve

On 8/26/2019 3:00 AM, Mattia wrote:
> After the compilation I get the following list of errors:
>
> CST error 1:
>     -> Missing thorn ExternalLibraries/BLAS
>
>
> CST error 2:
>     -> Missing thorn ExternalLibraries/FFTW3
>
>
> CST error 3:
>     -> Missing thorn ExternalLibraries/GSL
>
>
> CST error 4:
>     -> Missing thorn ExternalLibraries/HDF5
>
>
> CST error 5:
>     -> Missing thorn ExternalLibraries/hwloc
>
>
> CST error 6:
>     -> Missing thorn ExternalLibraries/LAPACK
>
>
> CST error 7:
>     -> Missing thorn ExternalLibraries/libjpeg
>
>
> CST error 8:
>     -> Missing thorn ExternalLibraries/LORENE
>
>
> CST error 9:
>     -> Missing thorn ExternalLibraries/MPI
>
>
> CST error 10:
>     -> Missing thorn ExternalLibraries/OpenSSL
>
>
> CST error 11:
>     -> Missing thorn ExternalLibraries/PAPI
>
>
> CST error 12:
>     -> Missing thorn ExternalLibraries/pthreads
>
>
> CST error 13:
>     -> Missing thorn ExternalLibraries/zlib
>
>
> CST error 14:
>     -> Thorn 'CT_MultiLevel' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'CT_MultiLevel' from it !
>
>
> CST error 15:
>     -> Thorn 'Carpet' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'Carpet' from it !
>
>
> CST error 16:
>     -> Thorn 'CarpetIOHDF5' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'CarpetIOHDF5' from it !
>
>
> CST error 17:
>     -> Thorn 'CarpetInterp' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'CarpetInterp' from it !
>
>
> CST error 18:
>     -> Thorn 'CarpetLib' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'CarpetLib' from it !
>
>
> CST error 19:
>     -> Thorn 'CarpetReduce' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'CarpetReduce' from it !
>
>
> CST error 20:
>     -> Thorn 'EOS_Omni' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'EOS_Omni' from it !
>
>
> CST error 21:
>     -> Thorn 'GiRaFFEfood' requires the capability 'GSL'.
>        Please add a thorn that provides 'GSL' to your ThornList or remove
> 'GiRaFFEfood' from it !
>
>
> CST error 22:
>     -> Thorn 'Hydro_RNSID' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'Hydro_RNSID' from it !
>
>
> CST error 23:
>     -> Thorn 'IOHDF5' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'IOHDF5' from it !
>
>
> CST error 24:
>     -> Thorn 'IOHDF5Util' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'IOHDF5Util' from it !
>
>
> CST error 25:
>     -> Thorn 'IOJpeg' requires the capability 'libjpeg'.
>        Please add a thorn that provides 'libjpeg' to your ThornList or
> remove 'IOJpeg' from it !
>
>
> CST error 26:
>     -> Thorn 'Interpolate2' requires the capability 'LAPACK'.
>        Please add a thorn that provides 'LAPACK' to your ThornList or
> remove 'Interpolate2' from it !
>
>
> CST error 27:
>     -> Thorn 'LlamaWaveToy' requires the capability 'LAPACK'.
>        Please add a thorn that provides 'LAPACK' to your ThornList or
> remove 'LlamaWaveToy' from it !
>
>
> CST error 28:
>     -> Thorn 'Meudon_Bin_BH' requires the capability 'LORENE'.
>        Please add a thorn that provides 'LORENE' to your ThornList or
> remove 'Meudon_Bin_BH' from it !
>
>
> CST error 29:
>     -> Thorn 'Meudon_Bin_NS' requires the capability 'LORENE'.
>        Please add a thorn that provides 'LORENE' to your ThornList or
> remove 'Meudon_Bin_NS' from it !
>
>
> CST error 30:
>     -> Thorn 'Meudon_Mag_NS' requires the capability 'LORENE'.
>        Please add a thorn that provides 'LORENE' to your ThornList or
> remove 'Meudon_Mag_NS' from it !
>
>
> CST error 31:
>     -> Thorn 'NullNews' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'NullNews' from it !
>
>
> CST error 32:
>     -> Thorn 'QuasiLocalMeasures' requires the capability 'LAPACK'.
>        Please add a thorn that provides 'LAPACK' to your ThornList or
> remove 'QuasiLocalMeasures' from it !
>
>
> CST error 33:
>     -> Thorn 'SphericalHarmonicDecomp' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'SphericalHarmonicDecomp' from it !
>
>
> CST error 34:
>     -> Thorn 'SphericalHarmonicDecomp' requires the capability 'GSL'.
>        Please add a thorn that provides 'GSL' to your ThornList or remove
> 'SphericalHarmonicDecomp' from it !
>
>
> CST error 35:
>     -> Thorn 'SphericalHarmonicRecon' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'SphericalHarmonicRecon' from it !
>
>
> CST error 36:
>     -> Thorn 'SphericalHarmonicRecon' requires the capability 'FFTW3'.
>        Please add a thorn that provides 'FFTW3' to your ThornList or
> remove 'SphericalHarmonicRecon' from it !
>
>
> CST error 37:
>     -> Thorn 'SphericalHarmonicRecon' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'SphericalHarmonicRecon' from it !
>
>
> CST error 38:
>     -> Thorn 'SphericalHarmonicReconGen' requires the capability 'HDF5'.
>        Please add a thorn that provides 'HDF5' to your ThornList or
> remove 'SphericalHarmonicReconGen' from it !
>
>
> CST error 39:
>     -> Thorn 'SystemTopology' requires the capability 'hwloc'.
>        Please add a thorn that provides 'hwloc' to your ThornList or
> remove 'SystemTopology' from it !
>
>
> CST error 40:
>     -> Thorn 'SystemTopology' requires the capability 'MPI'.
>        Please add a thorn that provides 'MPI' to your ThornList or remove
> 'SystemTopology' from it !
>
>
> CST error 41:
>     -> Thorn 'TGRtensor' requires the capability 'LAPACK'.
>        Please add a thorn that provides 'LAPACK' to your ThornList or
> remove 'TGRtensor' from it !
>
>
> CST error 42:
>     -> Thorn 'TwoPunctures' requires the capability 'GSL'.
>        Please add a thorn that provides 'GSL' to your ThornList or remove
> 'TwoPunctures' from it !
>
>
> CST error 43:
>     -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'.
>        Please add a thorn that provides 'GSL' to your ThornList or remove
> 'TwoPunctures_KerrProca' from it !
>
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