[Users] x86_64 link-time errors on MacOS Mojave
Bernard Kelly
physicsbeany at gmail.com
Thu Jun 20 11:49:12 CDT 2019
Hi Roland.
Here's the result of uname -a:
Darwin gs66-dodder 18.6.0 Darwin Kernel Version 18.6.0: Thu Apr 25
23:16:27 PDT 2019; root:xnu-4903.261.4~2/RELEASE_X86_64 x86_64
Attached is the full list of installed ports (a bit longer than yours)
Bernard
On Thu, 20 Jun 2019 at 12:44, Haas, Roland <rhaas at illinois.edu> wrote:
>
> Hello Bernard,
>
> > I did a clean, from-scratch compilation after copying that 18.2.0
> > Darwin architecture file to 18.6.0.
> >
> > Sadly, no change. Still fails at link time with all the "Undefined
> > _H5xxxx" errors.
> Ok. Since it starts with at "_" I almost suspected it may be some
> Fortran binding but then it is being called from C++ code.
>
> My own test is still compiling (slow VM).
>
> Could you include the output of:
>
> * sudo port installed
> * uname -a
>
> I have included my own output to give you an idea of what I am looking
> for (note that I cannot tell yet if compiling in my VM will encounter
> the same error you see).
>
> Yours,
> Roland
>
> --
> My email is as private as my paper mail. I therefore support encrypting
> and signing email messages. Get my PGP key from http://pgp.mit.edu .
--
------------------------------------------------------------------
Bernard Kelly -- CRESST Assistant Research Scientist, NASA/GSFC
Gravitational Astrophysics Laboratory --- Code 663
Phone: +1 (301) 286-7243 *** Fax: +1 (301) 286-2226
Web: http://science.gsfc.nasa.gov/sed/bio/bernard.j.kelly
ORCID: orcid.org/0000-0002-3326-4454
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The following ports are currently installed:
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py27-scipy @1.2.1_0+gfortran+openblas
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python2_select @0.0_3 (active)
python3_select @0.0_1 (active)
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speex @1.2.0_0 (active)
sqlite3 @3.27.2_0
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texlive-fonts-recommended @45777_0+doc
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texlive-lang-german @47442_0+doc
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texlive-lang-italian @47434_0+doc
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texlive-lang-polish @47447_0+doc
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texlive-lang-portuguese @50792_0+doc (active)
texlive-lang-spanish @47443_0+doc
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texlive-latex @47377_0+doc
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texlive-latex-extra @47410_0+doc
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texlive-latex-recommended @47392_0+doc
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texlive-metapost @47198_0+doc
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texlive-pictures @47373_0+doc
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tk @8.6.9_1+x11
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xfig @3.2.7a_0 (active)
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xmlcatmgr @2.2_1 (active)
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xorg-libXt @1.1.5_2 (active)
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xorg-printproto @1.0.5_0 (active)
xorg-util-macros @1.19.2_0 (active)
xorg-xcb-proto @1.13_0+python27
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xorg-xcb-util @0.4.0_1 (active)
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xpm @3.5.12_1 (active)
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xz @5.2.4_0 (active)
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zlib @1.2.11_0 (active)
zmq @4.3.1_0 (active)
zstd @1.3.8_0
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