[Users] Open numbered CarpetHDF5 with visit

Haas, Roland rhaas at illinois.edu
Fri Mar 29 09:35:13 CDT 2019


Hello Jens,

the code in the CarpetHDF5 reader currently included in VisIt has
will not let you use VisIt's functionality to treat foo.1.h5 foo.2.h5
foo.3.h5 as 3 timesteps in a timeseries. 

If you are willing to compile your own reader and if you are using 2.12
still (and not 2.13 yet) then you can you the "multifile" branch of
bitbucket.org/rhaas80/carpethdf5:

git clone -b multifile https://bitbucket.org/rhaas80/carpethdf5

which may bring this functionality back. You may have to create
a .visit file to list the hdf5 file though. Those files consists of the
first line reading
!NBLOCKS no-of-mpi-ranks
then the filenames of all the *.file_0.h5 files (no need to give
file_1 etc) you want to include (see
http://visitusers.org/index.php?title=.visit_file).

To install (from README.TXT):

0) Set your PATH environmental variable to include your "visit/bin"
1) run ./install
2) edit "CMake" tab and modify the C/C++ HDF5 paths if necessary.
3) save and close window

It currently fails to compile for me when trying to compile for 2.13,
and I do not know enough of VisIt's build system to be able to quickly
fix it.

Yours,
Roland

> Dear all,
> 
> I have made some use of hdf5_merger and hdf5_slicer to convert my 3D 
> simulation output into hdf5 files which only contain the data of one 
> iteration - for example in the format var.iteration.h5 (i.e. var.*.h5).
> 
> Visit recognizes this as a database, however, I am not able to use the 
> time slider to jump between the numbered files. Is there any further 
> conversion which I have to undertake? I would be glad to hear some best 
> practices.
> 
> Thank you very much and my best!
> 
> Jens
> 
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> Users at einsteintoolkit.org
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