[Users] Compiling Cactus on M1 Mac

Garrison, David Garrison at uhcl.edu
Wed Dec 22 11:12:40 CST 2021 

Thanks,

That seems to do it.  I assumed that bash was in MacOS.

-DG

> On Dec 22, 2021, at 6:13 AM, Roland Haas <rhaas at illinois.edu> wrote:
> 
> Hello DG,
> 
> Since "bash" is the failing program, does typing "bash" (and enter) on the command line work? Did you ever install your own bash? You may also (though I would be surprised) have luck installing "bash" via your package manager. Bash is a fairly basic tool for the system so it not being able to run is odd.
> 
> Note: this is likeky more an issue with your system setup / M1 macs in general and less likely to be ET specific so there may be other non-ET users on the Internet reporting it 
> 
> Yours,
> Roland
> 
> ----- Original Message -----
> From: "Garrison, David" <Garrison at uhcl.edu <mailto:Garrison at uhcl.edu>>
> Sent: 2021-12-22 - 02:07
> To: "users at einsteintoolkit.org <mailto:users at einsteintoolkit.org>" <users at einsteintoolkit.org <mailto:users at einsteintoolkit.org>>
> Subject: Re: [Users] Compiling Cactus on M1 Mac
> 
>> I get the error when I try to compile the code.  It is coming from the external library thorns.
>> 
>> Running any thorn-provided configuration scripts...
>> 
>> ********************************************************************************
>> Running configuration script for thorn FFTW3:
>> Can't exec "bash": Bad CPU type in executable at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 36.
>> 
>> CST error 1:
>>  -> Configuration script for thorn FFTW3 failed to start: Bad CPU type in executable
>> 
>> readline() on closed filehandle $lines at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 40.
>> 
>> CST error 2:
>>  -> Configuration script for thorn FFTW3 failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> Finished running configuration script for thorn FFTW3.
>> 
>> ********************************************************************************
>> Running configuration script for thorn FORTRAN:
>> Found an ANSI-like Fortran cpp
>> Finished running configuration script for thorn FORTRAN.
>> 
>> ********************************************************************************
>> Running configuration script for thorn MPI:
>> MPI selected, but MPI_DIR is not set. Computing settings...
>> Found MPI compiler wrapper at /usr/local/bin/mpic++!
>> Installing MPI into /Users/garrison/Applications/Cactus/configs/specgrmhd/scratch/external/MPI
>> MPI was manually configured.
>> Finished running configuration script for thorn MPI.
>> 
>> ********************************************************************************
>> Running configuration script for thorn OPENBLAS:
>> Can't exec "bash": Bad CPU type in executable at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 36.
>> 
>> CST error 3:
>>  -> Configuration script for thorn OPENBLAS failed to start: Bad CPU type in executable
>> 
>> readline() on closed filehandle $lines at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 40.
>> 
>> CST error 4:
>>  -> Configuration script for thorn OPENBLAS failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> Finished running configuration script for thorn OPENBLAS.
>> 
>> ********************************************************************************
>> Running configuration script for thorn VECTORS:
>> Can't exec "bash": Bad CPU type in executable at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 36.
>> 
>> CST error 5:
>>  -> Configuration script for thorn VECTORS failed to start: Bad CPU type in executable
>> 
>> readline() on closed filehandle $lines at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 40.
>> 
>> CST error 6:
>>  -> Configuration script for thorn VECTORS failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> Finished running configuration script for thorn VECTORS.
>> 
>> ********************************************************************************
>> Running configuration script for thorn ZLIB:
>> Can't exec "bash": Bad CPU type in executable at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 36.
>> 
>> CST error 7:
>>  -> Configuration script for thorn ZLIB failed to start: Bad CPU type in executable
>> 
>> readline() on closed filehandle $lines at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 40.
>> 
>> CST error 8:
>>  -> Configuration script for thorn ZLIB failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> Finished running configuration script for thorn ZLIB.
>> 
>> ********************************************************************************
>> Running configuration script for thorn HDF5:
>> Can't exec "bash": Bad CPU type in executable at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 36.
>> 
>> CST error 9:
>>  -> Configuration script for thorn HDF5 failed to start: Bad CPU type in executable
>> 
>> readline() on closed filehandle $lines at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 40.
>> 
>> CST error 10:
>>  -> Configuration script for thorn HDF5 failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> Finished running configuration script for thorn HDF5.
>> 
>> ********************************************************************************
>> Running configuration script for thorn LAPACK:
>> Can't exec "bash": Bad CPU type in executable at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 36.
>> 
>> CST error 11:
>>  -> Configuration script for thorn LAPACK failed to start: Bad CPU type in executable
>> 
>> readline() on closed filehandle $lines at /Users/garrison/Applications/Cactus/repos/flesh/lib/sbin/ConfigScriptParser.pl line 40.
>> 
>> CST error 12:
>>  -> Configuration script for thorn LAPACK failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> Finished running configuration script for thorn LAPACK.
>> Checking consistency...
>> Argument "1.0D-5" isn't numeric in addition (+) at /Users/garrison/Applications/Cactus/lib/sbin/CST line 793.
>> Argument "1.0D-5" isn't numeric in addition (+) at /Users/garrison/Applications/Cactus/lib/sbin/CST line 794.
>> 
>> 
>> ------------------------------------------------------
>> There were 12 errors during execution of the CST
>> These must be corrected before compilation can proceed
>> ------------------------------------------------------
>> 
>> 
>> 
>> ------------------------------------------------------
>> Warnings were generated during execution of the CST
>> ------------------------------------------------------
>> 
>> 
>> CST error 1:
>>  -> Configuration script for thorn FFTW3 failed to start: Bad CPU type in executable
>> 
>> 
>> CST error 2:
>>  -> Configuration script for thorn FFTW3 failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> 
>> CST error 3:
>>  -> Configuration script for thorn OPENBLAS failed to start: Bad CPU type in executable
>> 
>> 
>> CST error 4:
>>  -> Configuration script for thorn OPENBLAS failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> 
>> CST error 5:
>>  -> Configuration script for thorn VECTORS failed to start: Bad CPU type in executable
>> 
>> 
>> CST error 6:
>>  -> Configuration script for thorn VECTORS failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> 
>> CST error 7:
>>  -> Configuration script for thorn ZLIB failed to start: Bad CPU type in executable
>> 
>> 
>> CST error 8:
>>  -> Configuration script for thorn ZLIB failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> 
>> CST error 9:
>>  -> Configuration script for thorn HDF5 failed to start: Bad CPU type in executable
>> 
>> 
>> CST error 10:
>>  -> Configuration script for thorn HDF5 failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> 
>> CST error 11:
>>  -> Configuration script for thorn LAPACK failed to start: Bad CPU type in executable
>> 
>> 
>> CST error 12:
>>  -> Configuration script for thorn LAPACK failed to execute: Bad file descriptor
>>     (no error message)
>> 
>> ------------------------------------------------------
>> 
>> 
>>> On Dec 21, 2021, at 9:59 PM, Roland Haas <rhaas at illinois.edu> wrote:
>>> 
>>> Hello DG,
>>> 
>>>> Has anyone had success getting the Einstein Toolkit to compile on a
>>>> M1 powered Mac?  I get "Bad CPU type in executable” when I try.
>>> The newest version (2021_11) may work (if you follow the instructions at
>>> the top of the new user tutorial
>>> https://urldefense.com/v3/__https://raw.githubusercontent.com/nds-org/jupyter-et/master/tutorial-server/notebooks/CactusTutorial.ipynb__;!!BCR0FSePrR4x!HSpcf0NgavIu9EHi3H0eOK67623_FGUuCixULyS0-dFv1GlDrNXWFU74OCV7LlXEXKuaelhmNYjW4PokPQ$ <https://urldefense.com/v3/__https://raw.githubusercontent.com/nds-org/jupyter-et/master/tutorial-server/notebooks/CactusTutorial.ipynb__;!!BCR0FSePrR4x!HSpcf0NgavIu9EHi3H0eOK67623_FGUuCixULyS0-dFv1GlDrNXWFU74OCV7LlXEXKuaelhmNYjW4PokPQ$>  to install homebrew or macports and some of the support packages).
>>> 
>>> Do you get this error when trying to run or while compiling?
>>> 
>>> Yours,
>>> Roland
>>> 
>>> -- 
>>> My email is as private as my paper mail. I therefore support encrypting
>>> and signing email messages. Get my PGP key from https://urldefense.com/v3/__http://keys.gnupg.net__;!!BCR0FSePrR4x!HSpcf0NgavIu9EHi3H0eOK67623_FGUuCixULyS0-dFv1GlDrNXWFU74OCV7LlXEXKuaelhmNYhh7H6pKQ$ <https://urldefense.com/v3/__http://keys.gnupg.net__;!!BCR0FSePrR4x!HSpcf0NgavIu9EHi3H0eOK67623_FGUuCixULyS0-dFv1GlDrNXWFU74OCV7LlXEXKuaelhmNYhh7H6pKQ$> .
>> 
>> -- 
>> David Garrison, Ph.D.
>> Interim Associate Dean for the College of Science and Engineering, Professor and Former Chair of Physics
>> University of Houston-Clear Lake
>> Bayou 3611
>> Houston, TX 77058 
>> 
>> Tel: 281-283-3796 
>> Fax: 281-283-3709 
>> http://sce.uhcl.edu/garrison <http://sce.uhcl.edu/garrison>
>> http://www.uhcl.edu/physics <http://www.uhcl.edu/physics>
>> 
>> "If we knew what it was we were doing, it would not be called research,
>> would it?" ‹ Albert Einstein.
>> 
>> 
>> 
>> 
>> _______________________________________________
>> Users mailing list
>> Users at einsteintoolkit.org <mailto:Users at einsteintoolkit.org>
>> https://urldefense.com/v3/__http://lists.einsteintoolkit.org/mailman/listinfo/users__;!!BCR0FSePrR4x!HSpcf0NgavIu9EHi3H0eOK67623_FGUuCixULyS0-dFv1GlDrNXWFU74OCV7LlXEXKuaelhmNYhtd9GpZg$ <https://urldefense.com/v3/__http://lists.einsteintoolkit.org/mailman/listinfo/users__;!!BCR0FSePrR4x!HSpcf0NgavIu9EHi3H0eOK67623_FGUuCixULyS0-dFv1GlDrNXWFU74OCV7LlXEXKuaelhmNYhtd9GpZg$>
-- 
David Garrison, Ph.D.
Interim Associate Dean for the College of Science and Engineering, Professor and Former Chair of Physics
University of Houston-Clear Lake
Bayou 3611
Houston, TX 77058 

Tel: 281-283-3796 
Fax: 281-283-3709 
http://sce.uhcl.edu/garrison
http://www.uhcl.edu/physics

"If we knew what it was we were doing, it would not be called research,
would it?" ‹ Albert Einstein.




-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://lists.einsteintoolkit.org/pipermail/users/attachments/20211222/1b1b525e/attachment-0001.html 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: smime.p7s
Type: application/pkcs7-signature
Size: 1650 bytes
Desc: not available
Url : http://lists.einsteintoolkit.org/pipermail/users/attachments/20211222/1b1b525e/attachment-0001.bin

More information about the Users mailing list