[Users] Fw: TAT/ Slab Error

[Hamilton, Maria]

Sorry, I just have a quick follow-up on this subject, to clarify.
 Am I misinterpreting when I read "num-threads is larger than the value for cores or procs"?
The cluster I am using (ThornyFlat) gives me the formula:
procs* num-stm = np*num-threads
Disregarding simultaneous multithreading (num-stm = 1) and considering np>1, gives procs>num-threads
What I heard at the last ETK meeting was that procs is nr. processes, and it will be divided by the num threads.
I thought that if we divide procs by num-threads, we get np.
Indeed, testing it, I get:
--procs=24  --num-threads=1 <=> np=24
--procs =24  --num-threads=2 <=> np=12
_______________________
Maria C. Babiuc Hamilton, Ph.D.
Professor, Department of Physics
College of Science, Marshall University,
1 John Marshall Drive, Huntington, WV, 25755
Room S 257, Phone: (304)696-2754

________________________________
From: users-bounces at einsteintoolkit.org <users-bounces at einsteintoolkit.org> on behalf of Roland Haas <rhaas at illinois.edu>
Sent: Monday, January 18, 2021 5:17 PM
To: KARIMA SHAHZAD <02141911015 at student.qau.edu.pk>
Cc: users at einsteintoolkit.org <users at einsteintoolkit.org>
Subject: Re: [Users] TAT/ Slab Error

Hello Karima,

> Here is the error attached I encountered while evolving black holes
> binary. The work-around I guess is to increase the number of
> processes (if I am not wrong), but I am not quite sure how to do
> that. I need some help to get around this issue.
Assuming you use simulation factory you need to pass options to make
sure it creates multiple MPI processes. The auto-detection code tends
to choose a number of threads equal to the the number of cores on your
laptop and and a single MPI rank.

Eg if you have a 4 core laptop then you have to use:

./simfactory/bin/sim submit testrun01 --cores 4 --num-threads 2
--parfile ...

which uses a total of 4 cores and starts 2 threads per MPI rank so that
you end up with 4 / 2 = 2 MPI ranks each of which uses 2 threads.

Similarly on clusters, the basic idea is to set --num-threads so that
there are more than 1 MPI rank started (ie --num-threads is larger than
the value for --cores or --procs [which are synonyms for each other]).

If not using simulation factory you have to manually use mpirun and
OMP_NUM_THREADS. Eg:

export OMP_NUM_THREADS=2

mpirun -np 2 /home/karima/simulations/bbhHr/SIMFACTORY/exe/cactus_sim
-L 3 /home/karima/simulations/bbhHr/output-0000/BBHHigherRes.par

which starts 2 MPI ranks each will use 2 OpenMP threads.

Yours,
Roland

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