See https://build.barrywardell.net/job/EinsteinToolkitDoc/759/display/redirect?page=changes
Changes:
[Einstein Toolkit Git Server] Updated submodules:
[Einstein Toolkit Git Server] Updated submodules:
------------------------------------------ Started by an SCM change Started by an SCM change Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on ncsa (slave large) in workspace https://build.barrywardell.net/job/EinsteinToolkitDoc/ws/ No credentials specified
git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
git config remote.origin.url https://bitbucket.org/einsteintoolkit/einsteintoolkit.git # timeout=10
Fetching upstream changes from https://bitbucket.org/einsteintoolkit/einsteintoolkit.git
git --version # timeout=10 git fetch --tags --progress https://bitbucket.org/einsteintoolkit/einsteintoolkit.git +refs/heads/*:refs/remotes/origin/* # timeout=10 git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 5272e65e225463e9b57b0202014a17c79a12f579 (origin/master)
git config core.sparsecheckout # timeout=10 git checkout -f 5272e65e225463e9b57b0202014a17c79a12f579 # timeout=10
Commit message: "Updated submodules:"
git rev-list --no-walk facfd5d42bb8747f7ff38ea98b070fa7edd996aa # timeout=10 git tag -a -f -m Jenkins Build #759 jenkins-EinsteinToolkitDoc-759 # timeout=10
[EinsteinToolkitDoc] $ /bin/bash /tmp/jenkins7906018747273865175.sh Synchronizing submodule url for 'arrangements/CTThorns' Synchronizing submodule url for 'arrangements/CactusBase' Synchronizing submodule url for 'arrangements/CactusConnect' Synchronizing submodule url for 'arrangements/CactusDoc/CoreDoc' Synchronizing submodule url for 'arrangements/CactusElliptic' Synchronizing submodule url for 'arrangements/CactusExamples' Synchronizing submodule url for 'arrangements/CactusIO' Synchronizing submodule url for 'arrangements/CactusNumerical' Synchronizing submodule url for 'arrangements/CactusPUGH' Synchronizing submodule url for 'arrangements/CactusPUGHIO' Synchronizing submodule url for 'arrangements/CactusTest' Synchronizing submodule url for 'arrangements/CactusUtils' Synchronizing submodule url for 'arrangements/CactusWave' Synchronizing submodule url for 'arrangements/EinsteinAnalysis' Synchronizing submodule url for 'arrangements/EinsteinBase' Synchronizing submodule url for 'arrangements/EinsteinEOS' Synchronizing submodule url for 'arrangements/EinsteinEvolve' Synchronizing submodule url for 'arrangements/EinsteinExamples' Synchronizing submodule url for 'arrangements/EinsteinInitialData' Synchronizing submodule url for 'arrangements/EinsteinUtils' Synchronizing submodule url for 'arrangements/ExternalLibraries/BLAS' Synchronizing submodule url for 'arrangements/ExternalLibraries/FFTW3' Synchronizing submodule url for 'arrangements/ExternalLibraries/GSL' Synchronizing submodule url for 'arrangements/ExternalLibraries/HDF5' Synchronizing submodule url for 'arrangements/ExternalLibraries/LAPACK' Synchronizing submodule url for 'arrangements/ExternalLibraries/LORENE' Synchronizing submodule url for 'arrangements/ExternalLibraries/MPI' Synchronizing submodule url for 'arrangements/ExternalLibraries/OpenBLAS' Synchronizing submodule url for 'arrangements/ExternalLibraries/OpenCL' Synchronizing submodule url for 'arrangements/ExternalLibraries/OpenSSL' Synchronizing submodule url for 'arrangements/ExternalLibraries/PAPI' Synchronizing submodule url for 'arrangements/ExternalLibraries/PETSc' Synchronizing submodule url for 'arrangements/ExternalLibraries/hwloc' Synchronizing submodule url for 'arrangements/ExternalLibraries/libjpeg' Synchronizing submodule url for 'arrangements/ExternalLibraries/pciutils' Synchronizing submodule url for 'arrangements/ExternalLibraries/pthreads' Synchronizing submodule url for 'arrangements/ExternalLibraries/zlib' Synchronizing submodule url for 'arrangements/Lean' Synchronizing submodule url for 'arrangements/Llama' Synchronizing submodule url for 'arrangements/Numerical' Synchronizing submodule url for 'arrangements/PITTNullCode' Synchronizing submodule url for 'arrangements/Proca' Synchronizing submodule url for 'arrangements/WVUThorns' Synchronizing submodule url for 'arrangements/WVUThorns_Diagnostics' Synchronizing submodule url for 'flesh' Synchronizing submodule url for 'manifest' Synchronizing submodule url for 'repos/CRL' Synchronizing submodule url for 'repos/EinsteinExact' Synchronizing submodule url for 'repos/Kranc' Synchronizing submodule url for 'repos/McLachlan' Synchronizing submodule url for 'repos/carpet' Synchronizing submodule url for 'simfactory' Synchronizing submodule url for 'utils' Entering 'arrangements/CTThorns' Entering 'arrangements/CactusBase' Entering 'arrangements/CactusConnect' Entering 'arrangements/CactusDoc/CoreDoc' Entering 'arrangements/CactusElliptic' Entering 'arrangements/CactusExamples' Entering 'arrangements/CactusIO' Entering 'arrangements/CactusNumerical' Entering 'arrangements/CactusPUGH' Entering 'arrangements/CactusPUGHIO' Entering 'arrangements/CactusTest' Entering 'arrangements/CactusUtils' Entering 'arrangements/CactusWave' Entering 'arrangements/EinsteinAnalysis' Entering 'arrangements/EinsteinBase' Entering 'arrangements/EinsteinEOS' Entering 'arrangements/EinsteinEvolve' Entering 'arrangements/EinsteinExamples' Entering 'arrangements/EinsteinInitialData' Entering 'arrangements/EinsteinUtils' Entering 'arrangements/ExternalLibraries/BLAS' Entering 'arrangements/ExternalLibraries/FFTW3' Entering 'arrangements/ExternalLibraries/GSL' Entering 'arrangements/ExternalLibraries/HDF5' Entering 'arrangements/ExternalLibraries/LAPACK' Entering 'arrangements/ExternalLibraries/LORENE' Entering 'arrangements/ExternalLibraries/MPI' Entering 'arrangements/ExternalLibraries/OpenBLAS' Entering 'arrangements/ExternalLibraries/OpenCL' Entering 'arrangements/ExternalLibraries/OpenSSL' Entering 'arrangements/ExternalLibraries/PAPI' Entering 'arrangements/ExternalLibraries/PETSc' Entering 'arrangements/ExternalLibraries/hwloc' Entering 'arrangements/ExternalLibraries/libjpeg' Entering 'arrangements/ExternalLibraries/pciutils' Entering 'arrangements/ExternalLibraries/pthreads' Entering 'arrangements/ExternalLibraries/zlib' Entering 'arrangements/Lean' Entering 'arrangements/Llama' Entering 'arrangements/Numerical' Entering 'arrangements/PITTNullCode' Entering 'arrangements/Proca' Entering 'arrangements/WVUThorns' Entering 'arrangements/WVUThorns_Diagnostics' Entering 'flesh' Entering 'manifest' Entering 'repos/CRL' Entering 'repos/EinsteinExact' Entering 'repos/Kranc' Entering 'repos/McLachlan' Entering 'repos/carpet' Entering 'simfactory' Entering 'utils' Submodule path 'arrangements/WVUThorns': checked out '167486840423d2c2204e719364f1c8ab84cf2552' Submodule path 'simfactory': checked out '9db0eac1896be2a6d830c386c0d9dd0230e523af' Entering 'arrangements/CTThorns' HEAD is now at d3c9278 CT_MultiLevel: move LaTeX macros after THORNGUIDE marker Entering 'arrangements/CactusBase' HEAD is now at b8a831f Boundary: do not use sprintf with buffer that may be too small Entering 'arrangements/CactusConnect' HEAD is now at ed05d31 HTTPD: check HAVE_CAPABILITY_PTHREADS instad of CCTK_PTHREADS Entering 'arrangements/CactusDoc/CoreDoc' HEAD is now at 2c601ef add *.ccl files and src/make.code.defn Entering 'arrangements/CactusElliptic' HEAD is now at daeeadc EllBase: fix handling of 64bit Fortran string lengths Entering 'arrangements/CactusExamples' HEAD is now at fe04a29 Merge branch 'master' of https://bitbucket.org/cactuscode/cactusexamples Entering 'arrangements/CactusIO' HEAD is now at cb8c7d2 IOJpeg: Handle CCTK_INT!=int Entering 'arrangements/CactusNumerical' HEAD is now at 3039a0c RotatingSymmetry90: support Cactus vectors as 4-vectors Entering 'arrangements/CactusPUGH' HEAD is now at 1df75fd PUGH: Initialize new cGH fields ���cctk_alignment��� and ���cctk_alignment_offset��� Entering 'arrangements/CactusPUGHIO' HEAD is now at 63f958b IOHDF5: update checkpoint file after WaveToyC SYNC update Entering 'arrangements/CactusTest' HEAD is now at 6879c4f TestPar: test cbrt function Entering 'arrangements/CactusUtils' HEAD is now at ff8e96f Formaline: mark tarballs as INTERMEDIATE rather than PRECIOUS Entering 'arrangements/CactusWave' HEAD is now at b8a67d4 WaveToyF90: SYNC when selecting BCs, run BCs more often Entering 'arrangements/EinsteinAnalysis' HEAD is now at 914cb4b AHFinderDirect: allow up to 3 timelevels for backwards compatibility Entering 'arrangements/EinsteinBase' HEAD is now at 2eba166 StaticConformal: Use cctk_ash instead of cctk_lsh where necessary Entering 'arrangements/EinsteinEOS' HEAD is now at 836d72d EOS_Omni: allow only sane parameter ranges in param.ccl Entering 'arrangements/EinsteinEvolve' HEAD is now at 45db182 GRHydro: respect CPPFLAGS when building utilities Entering 'arrangements/EinsteinExamples' HEAD is now at 1f7de20 use GRHydro::sources_spatial_order in examples using GRHydro Entering 'arrangements/EinsteinInitialData' HEAD is now at 3c861d2 Hydro_RNSID: make documentation adhere to Cactus requirements Entering 'arrangements/EinsteinUtils' HEAD is now at aabd1ed SetMask_SphericalSurface: add ParamCheck routine Entering 'arrangements/ExternalLibraries/BLAS' HEAD is now at aa1b84c BLAS: correct name of tarball file used when checking deps Entering 'arrangements/ExternalLibraries/FFTW3' HEAD is now at 1775b2b FFTW3: force libdir when building from source Entering 'arrangements/ExternalLibraries/GSL' HEAD is now at 2c76b3e Prevent accidental library builds Entering 'arrangements/ExternalLibraries/HDF5' HEAD is now at 0d01753 HDF5: updated included tarball to 1.10.5 Entering 'arrangements/ExternalLibraries/LAPACK' HEAD is now at 172fcb7 LAPACK: correct name of tarball file used when checking deps Entering 'arrangements/ExternalLibraries/LORENE' HEAD is now at d982610 LORENE: remove manual handling of OpenMP flags Entering 'arrangements/ExternalLibraries/MPI' HEAD is now at f90a8ac MPI: update included tarball to 4.0.2 Entering 'arrangements/ExternalLibraries/OpenBLAS' HEAD is now at cf871fc Update to version 0.2.19 Entering 'arrangements/ExternalLibraries/OpenCL' HEAD is now at 23c9ebc Support Cygwin Entering 'arrangements/ExternalLibraries/OpenSSL' HEAD is now at 80db32c Support Cygwin Entering 'arrangements/ExternalLibraries/PAPI' HEAD is now at f484c85 PAPI: detect ifort based on its --version output Entering 'arrangements/ExternalLibraries/PETSc' HEAD is now at 89b5ec9 PETSc: use directory containing mpi.h as MPI_INC_DIRS Entering 'arrangements/ExternalLibraries/hwloc' HEAD is now at 5155046 hwloc: update included tarball to 2.0.1 (#1) Entering 'arrangements/ExternalLibraries/libjpeg' HEAD is now at 074a613 libjpeg: force libdir when compiling from source Entering 'arrangements/ExternalLibraries/pciutils' HEAD is now at ad7ec08 pciutils: remove unused patch files Entering 'arrangements/ExternalLibraries/pthreads' HEAD is now at 824b838 add more architectures: lib/i386-linux-gnu lib/arm-linux-gnueabihf Entering 'arrangements/ExternalLibraries/zlib' HEAD is now at dc4a17a Support Cygwin Entering 'arrangements/Lean' HEAD is now at 68f6f2c LeanBSSNMoL [Basegrid]: set the symmetries of rhs_lapse and rhs_shift Entering 'arrangements/Llama' HEAD is now at fb20ce8 Coordinates: provide Util_GetPhysicalBoundaries Util_GetGridRanges Entering 'arrangements/Numerical' HEAD is now at 273e500 AEILocalInterp: Replace deprecated use of finite with isfinite Entering 'arrangements/PITTNullCode' HEAD is now at 4cf65b4 SphericalHarmonciRecon: do not assume that hid_t is int Entering 'arrangements/Proca' HEAD is now at 3f3550e ProcaBase: add Cactus README file Entering 'arrangements/WVUThorns' HEAD is now at 1674868 wvuthorns/FishboneMoncriefID/doc/Tutorial-ETK_thorn-FishboneMoncriefID.ipynb: Update OS-specific commands to multiplatform versions provided by cmdline_helper.py and Python's os library. Now one can e.g., generate the FishboneMoncriefID thorn on systems running Windows. No functional change. Entering 'arrangements/WVUThorns_Diagnostics' HEAD is now at 052fb20 WVUThorns_Diagnostics/VolumeIntegrals_GRMHD/param.ccl: Increase the default Gamma speed limit and add description. Entering 'flesh' HEAD is now at ac461ce Cactus: mention \gitrevision macro in thorndoc template Entering 'manifest' HEAD is now at 5f6910e einsteintoolkit.bib: add many papers Entering 'repos/CRL' HEAD is now at d2e2554 GetComponents: support whitespace in directory paths Entering 'repos/EinsteinExact' HEAD is now at db5ac32 EinsteinExact: Regenerate code with new Kranc -- no functionality change Entering 'repos/Kranc' HEAD is now at bf2aa69 Kranc: document profile option in usage Entering 'repos/McLachlan' HEAD is now at 2c40282 McLachlan: use Cactus thorn guide style file Entering 'repos/carpet' HEAD is now at 5ec762c CarpetRegrid: prefix data<T> with CarpetLib namespace Entering 'simfactory' HEAD is now at 9db0eac simlib: correct log entry for ExecuteReplaceCommand Entering 'utils' HEAD is now at c42dcf3 update Cactus thornlists Creating user documentation (HTML) Converting figures to postscript Running htlatex.... ! Extra }, or forgotten \endgroup. ! Undefined control sequence. ! Extra }, or forgotten \endgroup. ! Undefined control sequence. ! Extra }, or forgotten \endgroup. ! Undefined control sequence. Problem in doc/UsersGuide/bincactus2.ps. See doc/UsersGuide/LATEX_MESSAGES. Makefile:1042: recipe for target 'UsersGuideHTML' failed make: *** [UsersGuideHTML] Error 1 Build step 'Execute shell' marked build as failure Archiving artifacts