See https://build.barrywardell.net/job/EinsteinToolkitDoc/911/display/redirect
Changes:
------------------------------------------ [...truncated 5.65 KB...] Submodule 'arrangements/ExternalLibraries/MPI' (https://github.com/einsteintoolkit/ExternalLibraries-MPI.git) registered for path 'arrangements/ExternalLibraries/MPI' Submodule 'arrangements/ExternalLibraries/OpenBLAS' (https://github.com/einsteintoolkit/ExternalLibraries-OpenBLAS.git) registered for path 'arrangements/ExternalLibraries/OpenBLAS' Submodule 'arrangements/ExternalLibraries/OpenCL' (https://github.com/einsteintoolkit/ExternalLibraries-OpenCL.git) registered for path 'arrangements/ExternalLibraries/OpenCL' Submodule 'arrangements/ExternalLibraries/OpenSSL' (https://github.com/einsteintoolkit/ExternalLibraries-OpenSSL.git) registered for path 'arrangements/ExternalLibraries/OpenSSL' Submodule 'arrangements/ExternalLibraries/PAPI' (https://github.com/einsteintoolkit/ExternalLibraries-PAPI.git) registered for path 'arrangements/ExternalLibraries/PAPI' Submodule 'arrangements/ExternalLibraries/PETSc' (https://github.com/einsteintoolkit/ExternalLibraries-PETSc.git) registered for path 'arrangements/ExternalLibraries/PETSc' Submodule 'arrangements/ExternalLibraries/hwloc' (https://github.com/einsteintoolkit/ExternalLibraries-hwloc.git) registered for path 'arrangements/ExternalLibraries/hwloc' Submodule 'arrangements/ExternalLibraries/libjpeg' (https://github.com/einsteintoolkit/ExternalLibraries-libjpeg.git) registered for path 'arrangements/ExternalLibraries/libjpeg' Submodule 'arrangements/ExternalLibraries/pciutils' (https://github.com/einsteintoolkit/ExternalLibraries-pciutils.git) registered for path 'arrangements/ExternalLibraries/pciutils' Submodule 'arrangements/ExternalLibraries/pthreads' (https://github.com/einsteintoolkit/ExternalLibraries-pthreads.git) registered for path 'arrangements/ExternalLibraries/pthreads' Submodule 'arrangements/ExternalLibraries/zlib' (https://github.com/einsteintoolkit/ExternalLibraries-zlib.git) registered for path 'arrangements/ExternalLibraries/zlib' Submodule 'arrangements/Lean' (https://bitbucket.org/canuda/lean_public.git) registered for path 'arrangements/Lean' Submodule 'arrangements/Llama' (https://bitbucket.org/llamacode/Llama.git) registered for path 'arrangements/Llama' Submodule 'arrangements/Numerical' (https://bitbucket.org/cactuscode/numerical.git) registered for path 'arrangements/Numerical' Submodule 'arrangements/PITTNullCode' (https://bitbucket.org/einsteintoolkit/pittnullcode.git) registered for path 'arrangements/PITTNullCode' Submodule 'arrangements/Proca' (https://bitbucket.org/canuda/Proca.git) registered for path 'arrangements/Proca' Submodule 'arrangements/WVUThorns' (https://bitbucket.org/zach_etienne/wvuthorns.git) registered for path 'arrangements/WVUThorns' Submodule 'arrangements/WVUThorns_Diagnostics' (https://bitbucket.org/zach_etienne/wvuthorns_diagnostics.git) registered for path 'arrangements/WVUThorns_Diagnostics' Submodule 'flesh' (https://bitbucket.org/cactuscode/cactus.git) registered for path 'flesh' Submodule 'manifest' (https://bitbucket.org/einsteintoolkit/manifest.git) registered for path 'manifest' Submodule 'repos/CRL' (git://github.com/gridaphobe/CRL.git) registered for path 'repos/CRL' Submodule 'repos/EinsteinExact' (git://github.com/barrywardell/EinsteinExact.git) registered for path 'repos/EinsteinExact' Submodule 'repos/EinsteinInitialData' (https://bitbucket.org/einsteintoolkit/einsteininitialdata.git) registered for path 'repos/EinsteinInitialData' Submodule 'repos/Kranc' (git://github.com/ianhinder/Kranc.git) registered for path 'repos/Kranc' Submodule 'repos/McLachlan' (https://bitbucket.org/einsteintoolkit/mclachlan) registered for path 'repos/McLachlan' Submodule 'repos/ReadInterpolate' (https://github.com/rhaas80/ReadInterpolate.git) registered for path 'repos/ReadInterpolate' Submodule 'repos/carpet' (https://bitbucket.org/eschnett/carpet.git) registered for path 'repos/carpet' Submodule 'simfactory' (https://bitbucket.org/simfactory/simfactory2.git) registered for path 'simfactory' Submodule 'utils' (https://bitbucket.org/cactuscode/utilities.git) registered for path 'utils' Cloning into 'https://build.barrywardell.net/job/EinsteinToolkitDoc/ws/arrangements/CTThorns'... 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Submodule path 'arrangements/CTThorns': checked out '8fae77a65f3c6469ecd9d3085d16a3d26a899bc0' Submodule path 'arrangements/CactusBase': checked out 'f54e0f4fb368553141cb90dc8bb8f60a2425da84' Submodule path 'arrangements/CactusConnect': checked out 'ed05d313be4f548ef035f37c316467390cdf3073' Submodule path 'arrangements/CactusDoc/CoreDoc': checked out '2c601efcc9b19439487069f568d2f2d461706730' Submodule path 'arrangements/CactusElliptic': checked out 'daeeadcd163bd7b5343f82ff80c4adccaaddde28' Submodule path 'arrangements/CactusExamples': checked out '8b4871d2c65ceea42446581910b107ed1e58b6ae' Submodule path 'arrangements/CactusIO': checked out 'cb8c7d2960ec53547864bd9a87eb190443f29a59' Submodule path 'arrangements/CactusNumerical': checked out '4ad768f3216342302688647234d38c72e3a2e316' Submodule path 'arrangements/CactusPUGH': checked out '1df75fdbf6f80805f58a0237dd0bc277bae75207' Submodule path 'arrangements/CactusPUGHIO': checked out '63f958be245119746095b4c993413ace4650fe62' Submodule path 'arrangements/CactusTest': checked out '02b4a509db0db2c23e9dca21e1477ba9c1fb66c9' Submodule path 'arrangements/CactusUtils': checked out 'f13cf834257517f6a13696eab075f5b594dc4e42' Submodule path 'arrangements/CactusWave': checked out 'b6551b1f201755fe61dc9faeb48e74e491c5afbf' Submodule path 'arrangements/EinsteinAnalysis': checked out '3df424fad767482a70e6649ff8b3a53716a14ee2' Submodule path 'arrangements/EinsteinBase': checked out '9ea098cf44ce1f79a3ae77d3955de707d58744f3' Submodule path 'arrangements/EinsteinEOS': checked out 'd0b8289bb7e9f3ea184437173e1eaddfa8022ec5' Submodule path 'arrangements/EinsteinEvolve': checked out '425380c9f3af67dcfb4feb5c5a1825d7f36c2276' Submodule path 'arrangements/EinsteinExamples': checked out '9c2c27ad57f6c43de678a792e4f0b292718e82a8' Submodule path 'arrangements/EinsteinUtils': checked out 'aabd1ed66bda6ccc1ae4c5810381ae716087482c' Submodule path 'arrangements/ExternalLibraries/BLAS': checked out '22ffa3c02b3e886aaa34224fe4ef59e7e950ebf7' Submodule path 'arrangements/ExternalLibraries/FFTW3': checked out 'bc2d214538d3fc46388f26e24e3be2d42b99bed3' Submodule path 'arrangements/ExternalLibraries/GSL': checked out '2c76b3ed99de304ee445f4e5464698bdd85a35e2' Submodule path 'arrangements/ExternalLibraries/HDF5': checked out '462fce2351834aa4c203627a3a339a2f093d0580' Submodule path 'arrangements/ExternalLibraries/LAPACK': checked out '4e216f4cf9834d15f4c4b9bdb9cd46908ce9646f' Submodule path 'arrangements/ExternalLibraries/LORENE': checked out 'd9826109e10b554d38ee57d8efd71f78dac43c59' Submodule path 'arrangements/ExternalLibraries/MPI': checked out '8e7f753ab8625c9bd75513b20c2650f9f39bde9e' Submodule path 'arrangements/ExternalLibraries/OpenBLAS': checked out 'cf871fcf577c961ed8b6be58fcac7a3cc4d9ca15' Submodule path 'arrangements/ExternalLibraries/OpenCL': checked out '23c9ebc327f17ad77717b733a3ba6751d1fe97ba' Submodule path 'arrangements/ExternalLibraries/OpenSSL': checked out '80db32c776484ae5e50ac2e80d7b0f177ad9a068' Submodule path 'arrangements/ExternalLibraries/PAPI': checked out '18a95d58f63d72912c1be3e518aa8d65d84100f9' Submodule path 'arrangements/ExternalLibraries/PETSc': checked out '89b5ec929d5f3833759b904214f502c34b68430a' Submodule path 'arrangements/ExternalLibraries/hwloc': checked out '87454befeadc1baf3f089ede43cffc1df69e27a6' Submodule path 'arrangements/ExternalLibraries/libjpeg': checked out '36262f2386c59e7a5f65f4e48e45abf15a2884cb' Submodule path 'arrangements/ExternalLibraries/pciutils': checked out 'ad7ec082e02ff4683c562da13737b09e0452587b' Submodule path 'arrangements/ExternalLibraries/pthreads': checked out '824b838777bbcc3fbf0c0717cb6425a39c958bfc' Submodule path 'arrangements/ExternalLibraries/zlib': checked out 'dc4a17ac84512c0b343031cb473523594f3d835b' Submodule path 'arrangements/Lean': checked out '1e8b8815e97e234aee420ab6d412632451fc4116' Submodule path 'arrangements/Llama': checked out '7ee5ccaf2bcfed9961e4d4649af5a481df28b13e' Submodule path 'arrangements/Numerical': checked out '273e500c1ee83d6822d0348bbae04f92ee4ab143' Submodule path 'arrangements/PITTNullCode': checked out 'aa4c4f98e0c8f05860743b01bb3388ef5347c3e5' Submodule path 'arrangements/Proca': checked out 'ca2876b65a9c106ce1ac0ffb18624354afdfa917' Submodule path 'arrangements/WVUThorns': checked out 'b826f6578b0c2b5a43ad9171e65a1b0af88d8b77' Submodule path 'arrangements/WVUThorns_Diagnostics': checked out '052fb20a07e1e6690c2882ca3384ecf01c48bcde' Submodule path 'flesh': checked out '1e362daf353555ad881b782895a187d6371b2b57' Submodule path 'manifest': checked out 'df8c25661a303f6f5764f413dae440567713e790' Submodule path 'repos/CRL': checked out 'ccc00de5072531da0f7179e9848482b7dae89bf7' Submodule path 'repos/EinsteinExact': checked out '0d400bae55182f344f1a14c1f7d509e3f00c2cd0' Submodule path 'repos/EinsteinInitialData': checked out '8cdd934c330036e78afcbb305f21ba12daaf2b35' Submodule path 'repos/Kranc': checked out 'e69182cf0e78e4120d6d3e518883037f9fde9eb5' Submodule path 'repos/McLachlan': checked out 'c5cb2ff03ca3612b86285b65dc0185c1439a3ff3' Submodule path 'repos/ReadInterpolate': checked out 'a3cfcc9807d7e3ca308441e6cf4b587ee8042e20' Submodule path 'repos/carpet': checked out 'e562bfcce9d26541e0c7e4c81ffc9c4462043d5b' Submodule path 'simfactory': checked out '2c7baa927e2755fb5bfa858bb6c640c9f2f0fbe4' Submodule path 'utils': checked out '362c8b28b4667c40aa22b13afe98e98656440a6d' Entering 'arrangements/CTThorns' HEAD is now at 8fae77a CT_Analytic: regenerate using Kranc e69182c Entering 'arrangements/CactusBase' HEAD is now at f54e0f4 Boundary: code cleanup Entering 'arrangements/CactusConnect' HEAD is now at ed05d31 HTTPD: check HAVE_CAPABILITY_PTHREADS instad of CCTK_PTHREADS Entering 'arrangements/CactusDoc/CoreDoc' HEAD is now at 2c601ef add *.ccl files and src/make.code.defn Entering 'arrangements/CactusElliptic' HEAD is now at daeeadc EllBase: fix handling of 64bit Fortran string lengths Entering 'arrangements/CactusExamples' HEAD is now at 8b4871d WaveMoL: remove explicit include of cctk_Arguments_Checked Entering 'arrangements/CactusIO' HEAD is now at cb8c7d2 IOJpeg: Handle CCTK_INT!=int Entering 'arrangements/CactusNumerical' HEAD is now at 4ad768f3 MoL: add missing break for RK4-MR-2-1 Entering 'arrangements/CactusPUGH' HEAD is now at 1df75fd PUGH: Initialize new cGH fields ���cctk_alignment��� and ���cctk_alignment_offset��� Entering 'arrangements/CactusPUGHIO' HEAD is now at 63f958b IOHDF5: update checkpoint file after WaveToyC SYNC update Entering 'arrangements/CactusTest' HEAD is now at 02b4a50 TestReduce: work around F77 compilers checking subroutine argument lists Entering 'arrangements/CactusUtils' HEAD is now at f13cf83 Vectors: support presync build Entering 'arrangements/CactusWave' HEAD is now at b6551b1 IDScalarWaveC: make compile in absense of presync Entering 'arrangements/EinsteinAnalysis' HEAD is now at 3df424fa EHFinder: explicitly convert void* pointers to addresses Entering 'arrangements/EinsteinBase' HEAD is now at 9ea098c Fixes issue https://bitbucket.org/einsteintoolkit/tickets/issues/2424/tmunubase-depends-... Entering 'arrangements/EinsteinEOS' HEAD is now at d0b8289 EOS_Omni: account for difference between scalars and 1-element arrays Entering 'arrangements/EinsteinEvolve' HEAD is now at 425380c GRHydro: do not write parfile in test Entering 'arrangements/EinsteinExamples' HEAD is now at 9c2c27a tov: add SystemTopology Entering 'arrangements/EinsteinUtils' HEAD is now at aabd1ed SetMask_SphericalSurface: add ParamCheck routine Entering 'arrangements/ExternalLibraries/BLAS' HEAD is now at 22ffa3c BLAS: use bash_utils.sh to search for library Entering 'arrangements/ExternalLibraries/FFTW3' HEAD is now at bc2d214 Added thorn documentation with notes on possibility for location stripping Entering 'arrangements/ExternalLibraries/GSL' HEAD is now at 2c76b3e Prevent accidental library builds Entering 'arrangements/ExternalLibraries/HDF5' HEAD is now at 462fce2 HDF5: update included tarball to 1.12 Entering 'arrangements/ExternalLibraries/LAPACK' HEAD is now at 4e216f4 LAPACK: use bash_utils.sh to search for library Entering 'arrangements/ExternalLibraries/LORENE' HEAD is now at d982610 LORENE: remove manual handling of OpenMP flags Entering 'arrangements/ExternalLibraries/MPI' HEAD is now at 8e7f753 MPI: enable MPI-1 compatibility Entering 'arrangements/ExternalLibraries/OpenBLAS' HEAD is now at cf871fc Update to version 0.2.19 Entering 'arrangements/ExternalLibraries/OpenCL' HEAD is now at 23c9ebc Support Cygwin Entering 'arrangements/ExternalLibraries/OpenSSL' HEAD is now at 80db32c Support Cygwin Entering 'arrangements/ExternalLibraries/PAPI' HEAD is now at 18a95d5 PAPI: update tarball to 6.0.0.1 Entering 'arrangements/ExternalLibraries/PETSc' HEAD is now at 89b5ec9 PETSc: use directory containing mpi.h as MPI_INC_DIRS Entering 'arrangements/ExternalLibraries/hwloc' HEAD is now at 87454be hwloc: do not use X11 or OpenGL Entering 'arrangements/ExternalLibraries/libjpeg' HEAD is now at 36262f2 libjpeg: use bash_utils.sh to find library Entering 'arrangements/ExternalLibraries/pciutils' HEAD is now at ad7ec08 pciutils: remove unused patch files Entering 'arrangements/ExternalLibraries/pthreads' HEAD is now at 824b838 add more architectures: lib/i386-linux-gnu lib/arm-linux-gnueabihf Entering 'arrangements/ExternalLibraries/zlib' HEAD is now at dc4a17a Support Cygwin Entering 'arrangements/Lean' HEAD is now at 1e8b881 add README Entering 'arrangements/Llama' HEAD is now at 7ee5cca Interpolate2: try ensuring that functions are properly nested Entering 'arrangements/Numerical' HEAD is now at 273e500 AEILocalInterp: Replace deprecated use of finite with isfinite Entering 'arrangements/PITTNullCode' HEAD is now at aa4c4f9 NullEvolve: specify correct type when USEing Cactus parameters Entering 'arrangements/Proca' HEAD is now at ca2876b manifest: add bib files with required citations Entering 'arrangements/WVUThorns' HEAD is now at b826f65 ID_converter_GiRaFFE: use correct type when USEing parameters Entering 'arrangements/WVUThorns_Diagnostics' HEAD is now at 052fb20 WVUThorns_Diagnostics/VolumeIntegrals_GRMHD/param.ccl: Increase the default Gamma speed limit and add description. Entering 'flesh' HEAD is now at 1e362daf Cactus: skip trying to find intrinsic module files Entering 'manifest' HEAD is now at df8c256 Revert "einsteintoolkit.th: remove ADMCoupling" Entering 'repos/CRL' HEAD is now at ccc00de GetComponents: ignore git:// transport when creating canonical URL Entering 'repos/EinsteinExact' HEAD is now at 0d400ba EinsteinExact: regenerate code using Kranc 021de75ba461eaeace4ccbd738e6b2a88367bcbb Entering 'repos/EinsteinInitialData' HEAD is now at 8cdd934c Exact: remove archive copy of source file Entering 'repos/Kranc' HEAD is now at e69182c generate READS statement for stress_energy_state if needed Entering 'repos/McLachlan' HEAD is now at c5cb2ff0 ML_CCZ4_Helper: regenerate code Entering 'repos/ReadInterpolate' HEAD is now at a3cfcc9 ReadInterpolate: use CCTK_VWARN etc macros Entering 'repos/carpet' HEAD is now at e562bfcc CarpetLib: Use original spatial prolongation order for op_copy Entering 'simfactory' HEAD is now at 2c7baa92 comet: manually choose sensible thread binding in ibrun Entering 'utils' HEAD is now at 362c8b2 MakeThornList: remove duplicate thorns from multiple parfiles make: pdf2ps: Command not found make: *** [Makefile:1040: doc/UsersGuide/bincactus2.ps] Error 127 Build step 'Execute shell' marked build as failure Archiving artifacts