[Users] VisIt could not read from the file

Christian Reisswig reisswig at tapir.caltech.edu
Thu Feb 3 09:25:48 CST 2011


Hi Maria,

1) did you explicitly selected the visit plugin to load the data?
Sometimes the Pixie format tries to load the data first.

2) Are you able to do an h5ls on the h5-files?

3) What version of Visit are you using - I guess v2.2.0?

4) What version of the plugin are you using?

cheers,
Christian


On Thursday, February 03, 2011 07:09:42 am Babiuc-Hamilton, Maria wrote:
> Hello,
> 
> I have problems trying to visualize in visit the h5 files created with the
> new HDF and zlib thorns. The errors are:
> 
> $ visit -debug-5
> Running: gui2.2.0 -debug-5
> Running: viewer2.2.0 -host 127.0.0.1 -port 5600 -debug-5 -geometry
> 1558x1150+362+25 -borders 24,5,5,5 -shift 5,25 -preshift 0,-1 -defer
> Running: mdserver2.2.0 -host 127.0.0.1 -port 5601 -debug-5
> HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 0:
>   #000: H5L.c line 1184 in H5Literate(): link iteration failed
>     major: Symbol table
>     minor: Iteration failed
>   #001: H5G.c line 1532 in H5G_iterate(): error iterating over links
>     major: Symbol table
>     minor: Iteration failed
>   #002: H5Gobj.c line 599 in H5G_obj_iterate(): can't iterate over symbol
> table major: Symbol table
>     minor: Iteration failed
>   #003: H5Gstab.c line 506 in H5G_stab_iterate(): unable to protect symbol
> table heap major: Symbol table
>     minor: Protected metadata error
>   #004: H5HL.c line 360 in H5HL_protect(): unable to load heap
>     major: Heap
>     minor: Unable to load metadata into cache
>   #005: H5AC.c line 1831 in H5AC_protect(): H5C_protect() failed.
>     major: Object cache
>     minor: Unable to protect metadata
>   #006: H5C.c line 6160 in H5C_protect(): can't load entry
>     major: Object cache
>     minor: Unable to load metadata into cache
>   #007: H5C.c line 10990 in H5C_load_entry(): unable to load entry
>     major: Object cache
>     minor: Unable to load metadata into cache
>   #008: H5HLcache.c line 259 in H5HL_load(): bad heap free list
>     major: Heap
>     minor: Unable to load metadata into cache
> 
> 
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