[Users] CarpetHDF5 Package Build error

[Garrison, David]

Hello,

I am attempting to build the CarpetHDF5 VisIt Plugin on a Mac 10.9.4 using version 2.8.0 of VisIt.  I get the following error.  Any ideas?

-DG

bash-3.2$ ./install
Running: xmledit2.8.0 CarpetHDF5.xml
Running: xml2cmake2.8.0 CarpetHDF5.xml
-----------------------------------------------------------------
               Parsed document of type Plugin
-----------------------------------------------------------------

Plugin: CarpetHDF5 ("Carpet AMR/curvilinear HDF5 output generated by the Cactus Computational Toolkit", type=database) -- version 2.1
    Attribute:  ()

-- The C compiler identification is AppleClang 5.1.0.5030040
-- The CXX compiler identification is AppleClang 5.1.0.5030040
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Configuring done
CMake Warning (dev):
  Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
  --help-policy CMP0042" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

  MACOSX_RPATH is not specified for the following targets:

   ECarpetHDF5Database_par
   ECarpetHDF5Database_ser
   ICarpetHDF5Database
   MCarpetHDF5Database

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done
-- Build files have been written to: /Users/garrison/Downloads/CarpetHDF5
Scanning dependencies of target ECarpetHDF5Database_par
[  6%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5EnginePluginInfo.C.o
[ 12%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5PluginInfo.C.o
[ 18%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5CommonPluginInfo.C.o
[ 25%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/avtCarpetHDF5FileFormat.C.o
[ 31%] Building CXX object CMakeFiles/ECarpetHDF5Database_par.dir/H5Index.C.o
Linking CXX shared library /Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib
Undefined symbols for architecture x86_64:
  "avtFileFormat::AddMeshToMetaData(avtDatabaseMetaData*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtMeshType, double const*, int, int, int, int, int const*)", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
  "avtScalarMetaData::avtScalarMetaData(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtCentering)", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
  "avtVectorMetaData::avtVectorMetaData(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, avtCentering, int)", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
  "avtDatabaseMetaData::AddGroupInformation(int, int, std::__1::vector<int, std::__1::allocator<int> >&)", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
  "avtDatabaseMetaData::SetTimes(std::__1::vector<double, std::__1::allocator<double> > const&)", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
  "avtDatabaseMetaData::SetCycles(std::__1::vector<int, std::__1::allocator<int> > const&)", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
  "avtDatabaseMetaData::GetMesh(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const", referenced from:
      avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) in avtCarpetHDF5FileFormat.C.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [/Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib] Error 1
make[1]: *** [CMakeFiles/ECarpetHDF5Database_par.dir/all] Error 2
make: *** [all] Error 2
bash-3.2$

--
David Garrison, Ph.D.
Associate Professor and Chair of Physics
University of Houston-Clear Lake
Bayou 3531
Houston, TX 77058

Tel: 281-283-3796
Fax: 281-283-3709
http://sce.uhcl.edu/garrison

For more information about the UHCL Physics Program go to http://www.uhcl.edu/physics or sign up for UHCL newsletters at https://ecommunications.houston.edu/uhcl/join.html

"If we knew what it was we were doing, it would not be called research, would it?" — Albert Einstein.



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