[Users] CarpetHDF5 Package Build error

[Steven R. Brandt]

The current version of Visit comes with the plugin already. You don't 
need to build it.

Cheers,
Steve

On 09/16/2014 06:45 PM, Garrison, David wrote:
> Hello,
>
> I am attempting to build the CarpetHDF5 VisIt Plugin on a Mac 10.9.4 
> using version 2.8.0 of VisIt.  I get the following error.  Any ideas?
>
> -DG
>
> bash-3.2$ ./install
> Running: xmledit2.8.0 CarpetHDF5.xml
> Running: xml2cmake2.8.0 CarpetHDF5.xml
> -----------------------------------------------------------------
>             Parsed document of type Plugin
> -----------------------------------------------------------------
>
> Plugin: CarpetHDF5 ("Carpet AMR/curvilinear HDF5 output generated by 
> the Cactus Computational Toolkit", type=database) -- version 2.1
>   Attribute:  ()
>
> -- The C compiler identification is AppleClang 5.1.0.5030040
> -- The CXX compiler identification is AppleClang 5.1.0.5030040
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Configuring done
> CMake Warning (dev):
> Policy CMP0042 is not set: MACOSX_RPATH is enabled by default.  Run "cmake
> --help-policy CMP0042" for policy details.  Use the cmake_policy 
> command to
> set the policy and suppress this warning.
>
> MACOSX_RPATH is not specified for the following targets:
>
> ECarpetHDF5Database_par
> ECarpetHDF5Database_ser
> ICarpetHDF5Database
> MCarpetHDF5Database
>
> This warning is for project developers.  Use -Wno-dev to suppress it.
>
> -- Generating done
> -- Build files have been written to: /Users/garrison/Downloads/CarpetHDF5
> Scanning dependencies of target ECarpetHDF5Database_par
> [  6%] Building CXX object 
> CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5EnginePluginInfo.C.o
> [ 12%] Building CXX object 
> CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5PluginInfo.C.o
> [ 18%] Building CXX object 
> CMakeFiles/ECarpetHDF5Database_par.dir/CarpetHDF5CommonPluginInfo.C.o
> [ 25%] Building CXX object 
> CMakeFiles/ECarpetHDF5Database_par.dir/avtCarpetHDF5FileFormat.C.o
> [ 31%] Building CXX object 
> CMakeFiles/ECarpetHDF5Database_par.dir/H5Index.C.o
> Linking CXX shared library 
> /Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib
> Undefined symbols for architecture x86_64:
> "avtFileFormat::AddMeshToMetaData(avtDatabaseMetaData*, 
> std::__1::basic_string<char, std::__1::char_traits<char>, 
> std::__1::allocator<char> >, avtMeshType, double const*, int, int, 
> int, int, int const*)", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> "avtScalarMetaData::avtScalarMetaData(std::__1::basic_string<char, 
> std::__1::char_traits<char>, std::__1::allocator<char> >, 
> std::__1::basic_string<char, std::__1::char_traits<char>, 
> std::__1::allocator<char> >, avtCentering)", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> "avtVectorMetaData::avtVectorMetaData(std::__1::basic_string<char, 
> std::__1::char_traits<char>, std::__1::allocator<char> >, 
> std::__1::basic_string<char, std::__1::char_traits<char>, 
> std::__1::allocator<char> >, avtCentering, int)", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> "avtDatabaseMetaData::AddGroupInformation(int, int, 
> std::__1::vector<int, std::__1::allocator<int> >&)", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> "avtDatabaseMetaData::SetTimes(std::__1::vector<double, 
> std::__1::allocator<double> > const&)", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> "avtDatabaseMetaData::SetCycles(std::__1::vector<int, 
> std::__1::allocator<int> > const&)", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> "avtDatabaseMetaData::GetMesh(std::__1::basic_string<char, 
> std::__1::char_traits<char>, std::__1::allocator<char> > const&) 
> const", referenced from:
> avtCarpetHDF5FileFormat::PopulateDatabaseMetaData(avtDatabaseMetaData*, int) 
> in avtCarpetHDF5FileFormat.C.o
> ld: symbol(s) not found for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see 
> invocation)
> make[2]: *** 
> [/Users/garrison/.visit/2.8.0/darwin-x86_64/plugins/databases/libECarpetHDF5Database_par.dylib] 
> Error 1
> make[1]: *** [CMakeFiles/ECarpetHDF5Database_par.dir/all] Error 2
> make: *** [all] Error 2
> bash-3.2$
>
> -- 
> David Garrison, Ph.D.
> Associate Professor and Chair of Physics
> University of Houston-Clear Lake
> Bayou 3531
> Houston, TX 77058
>
> Tel: 281-283-3796
> Fax: 281-283-3709
> http://sce.uhcl.edu/garrison
>
> For more information about the UHCL Physics Program go to 
> http://www.uhcl.edu/physics <http://www.uhcl.edu/physics> or sign up 
> for UHCL newsletters at https://ecommunications.houston.edu/uhcl/join.html
>
> "If we knew what it was we were doing, it would not be called 
> research, would it?" --- Albert Einstein.
>
>
>
>
>
> _______________________________________________
> Users mailing list
> Users at einsteintoolkit.org
> http://lists.einsteintoolkit.org/mailman/listinfo/users

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