[Users] mpi.h

[David Garrison]

I tried this on another cluster and got the results below.  I didn’t use simfactory on it either.

-DG

> On Mar 20, 2018, at 11:47 AM, Roland Haas <roland.haas at physics.gatech.edu> wrote:
> 
> Hello DG,
> 
> it could be that something failed while MPI was compiled. Would you mind attaching the following files from inside of your Cactus tree, please?
> 
> configs/sim/bindings/Configuration/Capabilities/make.MPI.defn

INC_DIRS +=  $(MPI_INC_DIRS)
INC_DIRS_F +=  $(MPI_LIB_DIRS)
MPI_BUILD       = 1
MPI_INSTALL_DIR = 
HWLOC_DIR       = 
CCTK_MPI     = 1
MPI_DIR      = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI
MPI_INC_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI/include
MPI_LIB_DIRS = /home/garrison/Cactus/configs/fixedmhd/scratch/external/MPI/lib
MPI_LIBS     = mpi_usempif08 mpi_usempi_ignore_tkr mpi_mpifh mpi_cxx mpi open-rte open-pal rt util
HAVE_CAPABILITY_MPI = 1

> configs/sim/bindings/Configuration/Capabilities/make.HDF5.defn

include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.MPI.defn
include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.ZLIB.defn
INC_DIRS +=  $(HDF5_INC_DIRS)
INC_DIRS_F +=  $(HDF5_INC_DIRS)
HDF5_BUILD          = 1
HDF5_ENABLE_CXX     = no
HDF5_ENABLE_FORTRAN = yes
LIBSZ_DIR           = 
LIBZ_DIR            = 
HDF5_INSTALL_DIR    = 
HDF5_DIR            = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5
HDF5_ENABLE_CXX     = no
HDF5_ENABLE_FORTRAN = yes
HDF5_INC_DIRS       = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/lib /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/include /home/garrison/Cactus/configs/fixedmh
d/scratch/external/HDF5/lib 
HDF5_LIB_DIRS       = /home/garrison/Cactus/configs/fixedmhd/scratch/external/HDF5/lib 
HDF5_LIBS           =  hdf5hl_fortran hdf5_fortran hdf5_hl hdf5 m z
HAVE_CAPABILITY_HDF5 = 1
> 
> configs/sim/bindings/Configuration/Capabilities/make.HDF5.deps

include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.MPI.deps
include /home/garrison/Cactus/configs/fixedmhd/bindings/Configuration/Capabilities/make.ZLIB.deps
> 
> as well as
> 
> confis/sim/config-info (as well as the option list that you used)?

# CONFIGURATION  : fixedmhd
# CONFIG-DATE    : Sun Mar 18 02:24:53 2018 (GMT)
# CONFIG-HOST    : singularity.cluster.internal
# CONFIG-STATUS  : 0
# CONFIG-OPTIONS :
MPI_DIR=BUILD


> 
> If possible also the full output of:
> 
> export VERBOSE=yes
> simfactory/bin/sim build 2>&1 | tee make.log
> 
> or 
> 
> export VERBOSE=yes
> make sim 2>&1 | tee make.log
> 
> (depending on whether you used simfactory or not), please?
> 
> Yours,
> Roland
> 
>> Hello,
>> 
>> Every time I try to compile my code I get the following error.  
>> 
>> COMPILING arrangements/CactusPUGHIO/IOHDF5Util/src/Startup.c
>> /share/apps/hdf5-1.8.12/include/H5public.h(61): catastrophic error: cannot open source file "mpi.h"
>>  #   include <mpi.h>
>> 
>> This is new as of the most recent versions of Cactus.  Previous compilations of the same code on the same cluster did not result in this error.  Any help is appreciated.
>> 
>> I used the config option: MPI_DIR = BUILD
>> 
>> -DG
>> 
>> Sent from my iPhone
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> 
> 
> Yours,
> Roland
> 
> 
> -- 
> My email is as private as my paper mail. I therefore support encrypting
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