[Users] error while loading shared libraries: libgsl.so.19
Severin Frank
severin.frank at uni-tuebingen.de
Mon Oct 1 09:46:59 CDT 2018
Dear all,
I'm a new user, trying to get familiar with Llama
I wanted to run the TOV example parameter file with a multipatch grid,
so I changed it. Unfortunately it does not work out and I can't see
where the error is coming from. The original static_tov.par worked fine
on my machine.
Does anyone see what I messed up?
Thanks a lot!
Best regards,
Severin
-------------- next part --------------
+ set -e
+ cd /home/severin/simulations/static_tov_llama/output-0003-active
+ echo Checking:
+ pwd
+ hostname
+ date
+ echo Environment:
+ export CACTUS_NUM_PROCS=1
+ export CACTUS_NUM_THREADS=1
+ export GMON_OUT_PREFIX=gmon.out
+ export OMP_NUM_THREADS=1
+ env
+ sort
+ echo Starting:
+ date +%s
+ export CACTUS_STARTTIME=1537451116
+ [ 1 = 1 ]
+ [ 0 -eq 0 ]
+ /home/severin/simulations/static_tov_llama/SIMFACTORY/exe/cactus_sim -L 3 /home/severin/simulations/static_tov_llama/output-0003/static_tov_llama.par
/home/severin/simulations/static_tov_llama/SIMFACTORY/exe/cactus_sim: error while loading shared libraries: libgsl.so.19: cannot open shared object file: No such file or directory
-------------- next part --------------
Simulation name: static_tov_llama
Running simulation static_tov_llama
Preparing:
Checking:
/home/severin/simulations/static_tov_llama/output-0003-active
severin-ThinkPad-T430
Do 20. Sep 15:45:16 CEST 2018
Environment:
Starting:
Do 20. Sep 15:45:16 CEST 2018
Simfactory Done at date: 0
-------------- next part --------------
## mclachlan tov_static
ActiveThorns = "Time MoL"
ActiveThorns = "Coordbase CartGrid3d Boundary StaticConformal"
ActiveThorns = "SymBase ADMBase TmunuBase HydroBase InitBase ADMCoupling ADMMacros"
ActiveThorns = "IOUtil Formaline"
ActiveThorns = "SpaceMask CoordGauge Constants LocalReduce aeilocalinterp LoopControl"
ActiveThorns = "Carpet CarpetLib CarpetReduce CarpetRegrid2 CarpetInterp"
ActiveThorns = "CarpetIOASCII CarpetIOScalar CarpetIOHDF5 CarpetIOBasic"
ActiveThorns = "ML_ADMConstraints NaNChecker"
##llama
ActiveThorns = "Coordinates Interpolate2 LlamaWaveToy GlobalDerivative
WaveExtractL AMBase ADMDerivatives"
# grid parameters
Carpet::domain_from_multipatch = yes
CartGrid3D::type = "multipatch"
CartGrid3D::set_coordinate_system = "Thornburg04"
Coordinates::h_cartesian = 1.22373626374
Coordinates::h_radial = 1.22373626374
Coordinates::sphere_inner_radius = 500
Coordinates::sphere_outer_radius = 2000
Coordinates::n_angular = 28
GenericFD::jacobian_group = "Coordinates::jacobian"
GenericFD::jacobian_derivative_group = "Coordinates::jacobian2"
GenericFD::jacobian_identity_map = 0
#CartGrid3D::domain = "full"
#CartGrid3D::avoid_origin = "no"
CoordBase::xmin = 0.0
CoordBase::ymin = 0.0
CoordBase::zmin = 0.0
CoordBase::xmax = 240.0
CoordBase::ymax = 240.0
CoordBase::zmax = 240.0
CoordBase::dx = 8
CoordBase::dy = 8
CoordBase::dz = 8
CoordBase::boundary_size_x_lower = 3
CoordBase::boundary_size_y_lower = 3
CoordBase::boundary_size_z_lower = 3
CoordBase::boundary_size_x_upper = 3
CoordBase::boundary_size_y_upper = 3
CoordBase::boundary_size_z_upper = 3
#CoordBase::boundary_shiftout_x_lower = 1
#CoordBase::boundary_shiftout_y_lower = 1
#CoordBase::boundary_shiftout_z_lower = 1
#CoordBase::boundary_shiftout_x_upper = 0
#CoordBase::boundary_shiftout_y_upper = 0
#CoordBase::boundary_shiftout_z_upper = 0
#ActiveThorns = "ReflectionSymmetry"
#ReflectionSymmetry::reflection_x = "yes"
#ReflectionSymmetry::reflection_y = "yes"
#ReflectionSymmetry::reflection_z = "yes"
#ReflectionSymmetry::avoid_origin_x = "no"
#ReflectionSymmetry::avoid_origin_y = "no"
#ReflectionSymmetry::avoid_origin_z = "no"
TmunuBase::stress_energy_storage = yes
TmunuBase::stress_energy_at_RHS = yes
TmunuBase::timelevels = 1
TmunuBase::prolongation_type = none
HydroBase::timelevels = 3
ADMMacros::spatial_order = 4
ADMBase::metric_type = "physical"
ML_ADMConstraints::timelevels = 3
SpaceMask::use_mask = "yes"
Cactus::terminate = "time"
Cactus::cctk_final_time = 1000
Carpet::domain_from_coordbase = "yes"
Carpet::enable_all_storage = no
Carpet::use_buffer_zones = "yes"
Carpet::poison_new_timelevels = "yes"
Carpet::check_for_poison = "no"
Carpet::poison_value = 113
Carpet::init_3_timelevels = no
Carpet::init_fill_timelevels = "yes"
CarpetLib::poison_new_memory = "yes"
CarpetLib::poison_value = 114
# system specific Carpet paramters
Carpet::max_refinement_levels = 10
driver::ghost_size = 3
Carpet::prolongation_order_space = 3
Carpet::prolongation_order_time = 2
CarpetRegrid2::regrid_every = 0
CarpetRegrid2::num_centres = 1
CarpetRegrid2::num_levels_1 = 5
CarpetRegrid2::radius_1[1] =120.0
CarpetRegrid2::radius_1[2] = 60.0
CarpetRegrid2::radius_1[3] = 30.0
CarpetRegrid2::radius_1[4] = 15.0
time::dtfac = 0.25
MoL::ODE_Method = "rk4"
MoL::MoL_Intermediate_Steps = 4
MoL::MoL_Num_Scratch_Levels = 1
# check all physical variables for NaNs
NaNChecker::check_every = 1
NaNChecker::action_if_found = "just warn" #"terminate", "just warn", "abort"
NaNChecker::check_vars = "ADMBase::metric ADMBase::lapse ADMBase::shift HydroBase::rho HydroBase::eps HydroBase::press HydroBase::vel"
## Lapse Condition: \partial_t alpha = - alpha K
## Shift Condition: \partial_t beta^i = 0
# Hydro paramters
ActiveThorns = "EOS_Omni"
ActiveThorns = "GRHydro"
HydroBase::evolution_method = "GRHydro"
GRHydro::riemann_solver = "Marquina"
GRHydro::GRHydro_eos_type = "Polytype"
GRHydro::GRHydro_eos_table = "2D_Polytrope"
GRHydro::recon_method = "ppm"
GRHydro::GRHydro_stencil = 3
GRHydro::bound = "none"
GRHydro::rho_abs_min = 1.e-10
#GRHydro::GRHydro = 18 # Tmunu(10), rho,press,eps,w_lorentz,vel, tau
#GRHydro::GRHydro = 10 # gij(6), alpha, beta(3)
ActiveThorns = "GenericFD NewRad"
ActiveThorns = "ML_BSSN ML_BSSN_Helper"
ADMBase::evolution_method = "ML_BSSN"
ADMBase::lapse_evolution_method = "ML_BSSN"
ADMBase::shift_evolution_method = "ML_BSSN"
ADMBase::dtlapse_evolution_method= "ML_BSSN"
ADMBase::dtshift_evolution_method= "ML_BSSN"
ML_BSSN::timelevels = 3
ML_BSSN::harmonicN = 1 # 1+log
ML_BSSN::harmonicF = 1.0 # 1+log
ML_BSSN::evolveA = 1
ML_BSSN::evolveB = 0
ML_BSSN::ShiftGammaCoeff = 0.0
ML_BSSN::AlphaDriver = 0.0
ML_BSSN::BetaDriver = 0.0
ML_BSSN::advectLapse = 0
ML_BSSN::advectShift = 0
ML_BSSN::MinimumLapse = 1.0e-8
ML_BSSN::initial_boundary_condition = "extrapolate-gammas"
ML_BSSN::rhs_boundary_condition = "NewRad"
ML_BSSN::ML_log_confac_bound = "none"
ML_BSSN::ML_metric_bound = "none"
ML_BSSN::ML_Gamma_bound = "none"
ML_BSSN::ML_trace_curv_bound = "none"
ML_BSSN::ML_curv_bound = "none"
ML_BSSN::ML_lapse_bound = "none"
ML_BSSN::ML_dtlapse_bound = "none"
ML_BSSN::ML_shift_bound = "none"
ML_BSSN::ML_dtshift_bound = "none"
# init parameters
InitBase::initial_data_setup_method = "init_some_levels"
ActiveThorns = "TOVSolver"
ADMBase::initial_data = "tov"
ADMBase::initial_lapse = "tov"
ADMBase::initial_shift = "tov"
ADMBase::initial_dtlapse = "zero"
ADMBase::initial_dtshift = "zero"
TOVSolver::TOV_Rho_Central[0] = 1.28e-3
TOVSolver::TOV_Gamma = 2.0
TOVSolver::TOV_K = 100.0
IOBasic::outInfo_every = 1
IOBasic::outInfo_vars = "HydroBase::rho ADMBase::lapse"
IO::out_dir = $parfile
IOScalar::outScalar_every = 32
IOScalar::one_file_per_group = yes
IOScalar::outScalar_vars = "
HydroBase::rho
HydroBase::press
HydroBase::eps
HydroBase::vel
ADMBase::lapse
ADMBase::metric
ADMBase::curv
ML_ADMConstraints::ML_Ham
ML_ADMConstraints::ML_mom
"
IOASCII::out1D_every = 256
IOASCII::one_file_per_group = yes
IOASCII::output_symmetry_points = no
IOASCII::out3D_ghosts = no
IOASCII::out3D_outer_ghosts = no
IOASCII::out1D_vars = "
HydroBase::rho
HydroBase::press
HydroBase::eps
HydroBase::vel
ADMBase::lapse
ADMBase::metric
ADMBase::curv
ML_ADMConstraints::ML_Ham
ML_ADMConstraints::ML_mom
"
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