[Users] x86_64 link-time errors on MacOS Mojave
Bernard Kelly
physicsbeany at gmail.com
Thu Jun 20 11:31:17 CDT 2019
Hi Roland et al.
I did a clean, from-scratch compilation after copying that 18.2.0
Darwin architecture file to 18.6.0.
Sadly, no change. Still fails at link time with all the "Undefined
_H5xxxx" errors.
Bernard
On Thu, 20 Jun 2019 at 11:42, Haas, Roland <rhaas at illinois.edu> wrote:
>
> Hello Bernard,
>
> I am still in the process of trying to reproduce your error.
>
> However one thing I noticed is that (yet again) Cactus needs a new
> architecture file (once for each Apple update) and reports that darwin
> 18.6.0 is not a known architecture. This may be part of the reason for
> failure.
>
> You can fix this by doing:
>
> cd repos/flesh/lib/make/known-architectures
> cp darwin18.2.0 darwin18.6.0
>
> I have pushed such architecture files into both the release branch and
> master (just now).
>
> Yours,
> Roland
>
> > Hi.
> >
> > I just downloaded the current stable ET release --- ET_2019_03 --- and
> > am trying a simple from-scratch compilation on my MacOS machine
> > running Mojave with Macports-supplied packages.
> >
> > I'm using the current osx-macports.cfg for my configuration, having
> > installed the ports mentioned at the top of the file. What I'm seeing
> > is a link-time failure involving the HDF5 libraries --- see below.
> >
> > Are there extra configuration steps I should be taking? Thanks, Bernard
> >
> > ----------- error output at end of compilation --------
> >
> > Undefined symbols for architecture x86_64:
> >
> > "_H5Aclose", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,
> > int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > ...
> >
> > "_H5Acreate1", referenced from:
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,
> > int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned
> > long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > ...
> >
> > "_H5Aget_space", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Aget_type", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Aopen_name", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Aread", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Awrite", referenced from:
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,
> > int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned
> > long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > ...
> >
> > "_H5Dclose", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Dcreate1", referenced from:
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Dextend", referenced from:
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > "_H5Dget_space", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > "_H5Dget_storage_size", referenced from:
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > "_H5Dget_type", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Dopen1", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > "_H5Dread", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > "_H5Dwrite", referenced from:
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Eauto_is_v2", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Eget_auto1", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Eget_auto2", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Eset_auto1", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Eset_auto2", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Fclose", referenced from:
> >
> > _CarpetIOHDF5_CloseFiles in libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::CloseFile(_cGH const*, long long&, long
> > long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Fcreate", referenced from:
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 0> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 1> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 2> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Fis_hdf5", referenced from:
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 0> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 1> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 2> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 3> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > "_H5Fopen", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 0> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 1> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Gclose", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteMetadata(_cGH const*, int, int, int, bool,
> > long long) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5Gcreate1", referenced from:
> >
> > CarpetIOHDF5::WriteMetadata(_cGH const*, int, int, int, bool,
> > long long) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5Gget_objinfo", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > "_H5Giterate", referenced from:
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Gopen1", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Gunlink", referenced from:
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5P_CLS_DATASET_CREATE_ID_g", referenced from:
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5P_CLS_DATASET_XFER_ID_g", referenced from:
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5P_CLS_FILE_ACCESS_ID_g", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 0> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Pclose", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Pcreate", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Pget_edc_check", referenced from:
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Pset_chunk", referenced from:
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Pset_deflate", referenced from:
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Pset_edc_check", referenced from:
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Pset_fapl_core", referenced from:
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > "_H5Pset_fclose_degree", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, std::__cxx11::basic_string<char,
> > std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int,
> > 0> const&, bool, bool, long long&, long long&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Pset_filter", referenced from:
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Pset_shuffle", referenced from:
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Sclose", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,
> > int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > ...
> >
> > "_H5Screate", referenced from:
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > AHFinderDirect::WriteAttribute(long long, char const*, char
> > const*, int) [clone .constprop.195] in
> > libthorn_AHFinderDirect.a(patch_system.cc.o)
> >
> > "_H5Screate_simple", referenced from:
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,
> > int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned
> > long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Sget_select_npoints", referenced from:
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Sget_simple_extent_dims", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > "_H5Sget_simple_extent_ndims", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Sget_simple_extent_npoints", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Sselect_hyperslab", referenced from:
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5T_C_S1_g", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > AHFinderDirect::WriteAttribute(long long, char const*, char
> > const*, int) [clone .constprop.195] in
> > libthorn_AHFinderDirect.a(patch_system.cc.o)
> >
> > "_H5T_NATIVE_DOUBLE_g", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5T_NATIVE_FLOAT_g", referenced from:
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5T_NATIVE_HSIZE_g", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned
> > long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > "_H5T_NATIVE_INT16_g", referenced from:
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5T_NATIVE_INT32_g", referenced from:
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5T_NATIVE_INT64_g", referenced from:
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5T_NATIVE_INT8_g", referenced from:
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5T_NATIVE_INT_g", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,
> > int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > "_H5T_NATIVE_LDOUBLE_g", referenced from:
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5T_NATIVE_SCHAR_g", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5Tclose", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5Tcopy", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > AHFinderDirect::WriteAttribute(long long, char const*, char
> > const*, int) [clone .constprop.195] in
> > libthorn_AHFinderDirect.a(patch_system.cc.o)
> >
> > "_H5Tcreate", referenced from:
> >
> > CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5Tget_class", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > "_H5Tget_size", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,
> > double&, ioRequest const*, bool, long long) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long
> > long&, std::vector<CarpetLib::gdata*,
> > std::allocator<CarpetLib::gdata*> >, CarpetLib::bbox<int, 3> const&,
> > int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&,
> > int, int, int, int, int, int, double, CarpetLib::vect<double, 3>
> > const&, CarpetLib::vect<double, 3> const&) in
> > libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5Tinsert", referenced from:
> >
> > CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > "_H5Tset_size", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, char const*
> > const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char
> > const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,
> > ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in
> > libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > AHFinderDirect::WriteAttribute(long long, char const*, char
> > const*, int) [clone .constprop.195] in
> > libthorn_AHFinderDirect.a(patch_system.cc.o)
> >
> > "_H5check_version", referenced from:
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc
> > const*, double const*, Multipole::mode_array const&) in
> > libthorn_Multipole.a(utils.cc.o)
> >
> > CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,
> > ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)
> >
> > ...
> >
> > "_H5garbage_collect", referenced from:
> >
> > _CarpetIOHDF5_CloseFiles in libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Checkpoint(_cGH const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)
> > in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<0>::CloseFile(_cGH const*, long long&, long
> > long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<1>::CloseFile(_cGH const*, long long&, long
> > long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > CarpetIOHDF5::IOHDF5<2>::CloseFile(_cGH const*, long long&, long
> > long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)
> >
> > ...
> >
> > "_H5open", referenced from:
> >
> > CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::OpenFileSet(_cGH const*,
> > std::__cxx11::basic_string<char, std::char_traits<char>,
> > std::allocator<char> >, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,
> > double&, std::_List_const_iterator<CarpetIOHDF5::patch_t>,
> > std::vector<CarpetLib::bboxset2::bboxset<int, 3>,
> > std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::Recover(_cGH*, char const*, int) in
> > libthorn_CarpetIOHDF5.a(Input.cc.o)
> >
> > CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, int) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > CarpetIOHDF5::WriteAttribute(long long, char const*, double) in
> > libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
> >
> > ...
> >
> > ld: symbol(s) not found for architecture x86_64
> >
> > collect2: error: ld returned 1 exit status
> >
> > make[1]: *** [/Users/bjkelly1/nobackup/codes/Cactus/exe/cactus_sim] Error 1
> >
> > make: *** [sim] Error 2
> >
> >
>
>
>
> --
> My email is as private as my paper mail. I therefore support encrypting
> and signing email messages. Get my PGP key from http://pgp.mit.edu .
--
------------------------------------------------------------------
Bernard Kelly -- CRESST Assistant Research Scientist, NASA/GSFC
Gravitational Astrophysics Laboratory --- Code 663
Phone: +1 (301) 286-7243 *** Fax: +1 (301) 286-2226
Web: http://science.gsfc.nasa.gov/sed/bio/bernard.j.kelly
ORCID: orcid.org/0000-0002-3326-4454
------------------------------------------------------------------
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