[Users] "signbit" not defined during compilation of ETK on XSEDE:Kraken?

Tue Feb 7 10:30:44 CST 2012

I believe that kraken has just undergone a software upgrade.  Maybe the problem was introduced then?  Maxwell definitely compiled on kraken when it was released.

-- 
Ian Hinder
ian.hinder at aei.mpg.de

----- Original message -----
> Hi Erik.
> 
> Thanks for the advice. I commented out all references to "signbit", and
> to "kifpos" lower down, and it now gets through the Vectors thorn. I'm
> now hitting an issue with an omp pragma in CarpetLib, but that's a
> separate problem.
> 
> BTW, I just tried to create a ticket (about the signbit issue) on
> trac.einsteintoolkit.org, but ...
> 
> "Submission rejected as potential spam"
> 
> I thought it was the list of modules I put in, but even without them it
> gets blocked.
> Also, the TRAC system doesn't list the Maxwell release (ET_2011_10) as a
> possible "version", which makes it hard to give an accurate report.
> 
> Bernard
> 
> 
> ---------------------------------------------------------------------------
> -- 
> Bernard Kelly -- CRESST Research Associate, NASA/GSFC
>     
> Phone: +1 (301) 286-7243
> E-Mail: bernard.j.kelly at nasa.gov
> Web: 
> http://science.gsfc.nasa.gov/sed/index.cfm?fuseAction=people.jumpBio&iphone
> bookid=13052
> ---------------------------------------------------------------------------
> --
> 
> 
> 
> 
> 
> 
> 
> On 2/6/12 11:17 PM, "Erik Schnetter" <schnetter at cct.lsu.edu> wrote:
> 
> > Bernard
> > 
> > test.cc is just a self-test. You can try commenting out the respective
> > code (or the whole routine), and see where this gets you.
> > 
> > Carpet (which may also use signbit) has a different, more complex
> > logic to handle various levels of C++ compliance, and may actually
> > still do the right thing.
> > 
> > -erik
> > 
> > On Mon, Feb 6, 2012 at 10:53 PM, Kelly, Bernard J.
> > (GSFC-660.0)[UNIVERSITY OF MARYLAND BALTIMORE COUNTY]
> > <bernard.j.kelly at nasa.gov> wrote:
> > > Hi all.
> > > 
> > > I recently checked out ETK Maxwell on the machine XSEDE machine
> > > Kraken, and am having trouble compiling and running a simple test
> > > case. The problem is with LSUThorns/Vectors/src/test.cc, where the
> > > "signbit" function is (apparently) undefined. No doubt the problem
> > > recurs with later
> > > source files, but I can't get past this one without abandoning
> > > Vectors and
> > > hence all of Carpet.
> > > 
> > > Now I can compile a "hello world" program in C invoking signbit.cc
> > > without
> > > a problem, as long as I include <math.h>, so presumably the ETK
> > > process is
> > > looking in the wrong location for this library or its headers.
> > > 
> > > Since Kraken is a "known" machine in ETK's simfactory, and lots of
> > > Numerical Relativity groups must have used it during the recently
> > > expired
> > > "NR-AR" allocation, I assume the problem's at my end. Any ideas?
> > > 
> > > Thanks,
> > > 
> > > Bernard
> > > 
> > > Some details:
> > > 
> > > (1) I initially used the simfactory "build" mechanism, but I have
> > > this problem with a straightforward Cactus "make" as well.
> > > 
> > > (2) Here's a list of my loaded modules on Kraken. I'm using the PGI
> > > compilers (item 18 below):
> > > 
> > > 1) modules/3.1.6.5
> > > 2) torque/2.4.14
> > > 3) moab/5.4.3.s16991
> > > 4) /opt/cray/xt-asyncpe/default/modulefiles/xtpe-istanbul
> > > 5) tgusage/3.0-r2
> > > 6) altd/1.0
> > > 7) DefApps
> > > 8) xtpe-target-cnl
> > > 9) xt-service/2.2.74
> > > 10) xt-os/2.2.74
> > > 11) xt-boot/2.2.74
> > > 12) xt-lustre-ss/2.2.74_1.6.5
> > > 13) cray/job/1.5.5-0.1_2.0202.21413.56.7
> > > 14) cray/csa/3.0.0-1_2.0202.21426.77.7
> > > 15) cray/account/1.0.0-2.0202.19482.49.18
> > > 16) cray/projdb/1.0.0-1.0202.19483.52.1
> > > 17) Base-opts/2.2.74
> > > 18) pgi/11.4.0
> > > 19) xt-libsci/10.5.02
> > > 20) pmi/2.1.4-1.0000.8596.15.1.ss
> > > 21) xt-mpt/5.2.3
> > > 22) xt-pe/2.2.74
> > > 23) xt-asyncpe/4.9
> > > 24) PrgEnv-pgi/2.2.74
> > > 25) cray/MySQL/5.0.64-1.0202.2899.21.1
> > > 26) git/1.7.4.2
> > > 27) python/2.6.4
> > > 28) mercurial/1.6.4
> > > 29) subversion/1.6.9
> > > 30) hdf5-parallel/1.6.10
> > > 
> > > 
> > > 
> > > 
> > > -------------------------------------------------------------------------
> > > --
> > > --
> > > Bernard Kelly -- CRESST Research Associate, NASA/GSFC
> > > 
> > > Phone: +1 (301) 286-7243
> > > E-Mail: bernard.j.kelly at nasa.gov
> > > Web:
> > > 
> > > http://science.gsfc.nasa.gov/sed/index.cfm?fuseAction=people.jumpBio&ipho
> > > ne
> > > bookid=13052
> > > 
> > > -------------------------------------------------------------------------
> > > --
> > > --
> > > 
> > > 
> > > 
> > > 
> > > 
> > > _______________________________________________
> > > Users mailing list
> > > Users at einsteintoolkit.org
> > > http://lists.einsteintoolkit.org/mailman/listinfo/users
> > 
> > 
> > 
> > -- 
> > Erik Schnetter <schnetter at cct.lsu.edu>   
> > http://www.cct.lsu.edu/~eschnett/
> 
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