Commits November 2010

commits@lists.einsteintoolkit.org

9 participants
258 discussions

[svn:einsteintoolkit] manifest/trunk/ (Rev. 41)
by schnetter＠cct.lsu.edu 08 Nov '10

08 Nov '10

User: eschnett Date: 2010/11/08 12:20 PM Added: /trunk/ einsteintoolkit.bib Log: Add thorns' citations File Changes: Directory: /trunk/ ================== File [added]: einsteintoolkit.bib Delta lines: +254 -0 =================================================================== --- trunk/einsteintoolkit.bib (rev 0) +++ trunk/einsteintoolkit.bib 2010-11-08 18:20:05 UTC (rev 41) @@ -0,0 +1,254 @@ +This files uses bibtex entries generated by SPIRES, and in particular +the bibtex keys from SPIRES. However, since SPIRES bibtex entries are +not always correct, many have been manually post-processed, e.g. to +complete or correct author lists. + +In addition to the standard bibtex keys there are two new ones: +required-for and suggested-for. Both contain space-separated lists of +Arrangement/Thorn names, specifying for which thorns this particular +publication is either required or suggested. + +The entries are sorted alphabetically by their bibtex keys, which +corresponds to their first author. + + + +@Unpublished{Alcubierre2003:BBH0-excision, + required-for = "EinsteinEvolve/LegoExcision", + author = {Miguel Alcubierre and Bernd Br{\"u}gmann and Peter + Diener and Frank Herrmann and Denis Pollney and + Edward Seidel and Ryoji Takahashi}, + title = "Testing excision techniques for dynamical {3D} black + hole evolutions", + year = 2004, + eprint = {gr-qc/0411137}, +} + +@Article{Ansorg:2004ds, + required-for = "EinsteinAnalysis/TwoPunctures", + author = "Ansorg, Marcus and Br{\"u}gmann, Bernd and Tichy, + Wolfgang", + title = "{A single-domain spectral method for black hole + puncture data}", + journal = "Phys. Rev. D", + volume = 70, + year = 2004, + pages = 064011, + eprint = "gr-qc/0404056", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.70.064011", + SLACcitation = "%%CITATION = GR-QC/0404056;%%" +} + +@Article{Baiotti:2004wn, + required-for = "EinsteinEvolve/GRHydro", + author = "Luca Baiotti and Ian Hawke and Pedro J. Montero and + Frank L{\"o}ffler and Luciano Rezzolla and Nikolaos + Stergioulas and Jose A. Font and Ed Seidel", + title = "{Three-dimensional relativistic simulations of + rotating neutron star collapse to a Kerr black + hole}", + journal = "Phys. Rev. D", + volume = 71, + year = 2005, + pages = 024035, + eprint = "gr-qc/0403029", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.71.024035", + SLACcitation = "%%CITATION = GR-QC/0403029;%%" +} + +@Article{Brown:2007pg, + required-for = "EinsteinAnalysis/NoExcision", + author = "David Brown and Olivier Sarbach and Erik Schnetter + and Manuel Tiglio and Peter Diener and Ian Hawke and + Denis Pollney", + title = "{Excision without excision: the relativistic + turducken}", + journal = "Phys. Rev.", + volume = "D76", + year = 2007, + pages = 081503, + eprint = "0707.3101", + archivePrefix ="arXiv", + primaryClass = "gr-qc", + doi = "10.1103/PhysRevD.76.081503", + SLACcitation = "%%CITATION = 0707.3101;%%" +} + +@Article{Brown:2008sb, + suggested-for ="Einsteinanalysis/Noexcision McLachlan/ML_BSSN", + author = "Brown, J. David and Diener, Peter and Sarbach, + Olivier and Schnetter, Erik and Tiglio, Manuel", + title = "{Turduckening black holes: an analytical and + computational study}", + journal = "Phys. Rev.", + volume = "D79", + year = 2009, + pages = 044023, + eprint = "0809.3533", + archivePrefix ="arXiv", + primaryClass = "gr-qc", + doi = "10.1103/PhysRevD.79.044023", + SLACcitation = "%%CITATION = 0809.3533;%%" +} + +@Article{Diener:2003jc, + required-for = "EinsteinAnalysis/EHFinder", + author = "Diener, Peter", + title = "{A new general purpose event horizon finder for 3D + numerical spacetimes}", + journal = "Class. Quantum Grav.", + volume = 20, + year = 2003, + pages = "4901-4918", + eprint = "gr-qc/0305039", + archivePrefix ="arXiv", + doi = "10.1088/0264-9381/20/22/014", + SLACcitation = "%%CITATION = GR-QC/0305039;%%" +} + +@Article{Diener:2005tn, + required-for = "LSUThorns/SummationByParts", + author = "Diener, Peter and Dorband, Ernst Nils and Schnetter, + Erik and Tiglio, Manuel", + title = "{New, efficient, and accurate high order derivative + and dissipation operators satisfying summation by + parts, and applications in three-dimensional + multi-block evolutions}", + journal = "J. Sci. Comput.", + volume = 32, + year = 2007, + pages = "109-145", + eprint = "gr-qc/0512001", + archivePrefix ="arXiv", + doi = "10.1007/s10915-006-9123-7", + SLACcitation = "%%CITATION = GR-QC/0512001;%%" +} + +@Article{Giacomazzo:2007ti, + suggested-for ="EinsteinEvolve/GRHydro", + author = "Giacomazzo, Bruno and Rezzolla, Luciano", + title = "{WhiskyMHD: a new numerical code for general + relativistic magnetohydrodynamics}", + journal = "Class. Quantum Grav.", + volume = 24, + year = 2007, + pages = "S235-S258", + eprint = "gr-qc/0701109", + archivePrefix ="arXiv", + doi = "10.1088/0264-9381/24/12/S16", + SLACcitation = "%%CITATION = GR-QC/0701109;%%" +} + +@Article{Gourgoulhon:2000nn, + required-for = "EinsteinInitialData/Meudon_Bin_NS", + author = "Gourgoulhon, Eric and Grandclement, Philippe and + Taniguchi, Keisuke and Marck, Jean-Alain and + Bonazzola, Silvano", + title = "{Quasiequilibrium sequences of synchronized and + irrotational binary neutron stars in general + relativity. I. Method and tests}", + journal = "Phys. Rev. D", + volume = 63, + year = 2001, + pages = 064029, + eprint = "gr-qc/0007028", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.63.064029", + SLACcitation = "%%CITATION = GR-QC/0007028;%%" +} + +@Article{Gourgoulhon:2001ec, + required-for = "EinsteinInitialData/Meudon_Bin_BH", + author = "Gourgoulhon, Eric and Grandclement, Philippe and + Bonazzola, Silvano", + title = "{Binary black holes in circular orbits. I. A global + spacetime approach}", + journal = "Phys. Rev. D", + volume = 65, + year = 2002, + pages = 044020, + eprint = "gr-qc/0106015", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.65.044020", + SLACcitation = "%%CITATION = GR-QC/0106015;%%" +} + +@Article{Grandclement:2001ed, + required-for = "EinsteinInitialData/Meudon_Bin_BH", + author = "Grandclement, Philippe and Gourgoulhon, Eric and + Bonazzola, Silvano", + title = "{Binary black holes in circular orbits. II. + Numerical methods and first results}", + journal = "Phys. Rev. D", + volume = 65, + year = 2002, + pages = 044021, + eprint = "gr-qc/0106016", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.65.044021", + SLACcitation = "%%CITATION = GR-QC/0106016;%%" +} + +@Article{Hawke:2005zw, + suggested-for ="EinsteinEvolve/GRHydro", + author = "Hawke, Ian and Loffler, Frank and Nerozzi, Andrea", + title = "{Excision methods for high resolution shock + capturing schemes applied to general relativistic + hydrodynamics}", + journal = "Phys. Rev. D", + volume = 71, + year = 2005, + pages = 104006, + eprint = "gr-qc/0501054", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.71.104006", + SLACcitation = "%%CITATION = GR-QC/0501054;%%" +} + +@Article{Schnetter:2003rb, + required-for = "Carpet/Carpet", + author = "Schnetter, Erik and Hawley, Scott H. and Hawke, Ian", + title = "{Evolutions in 3D numerical relativity using fixed + mesh refinement}", + journal = "Class. Quantum Grav.", + volume = 21, + year = 2004, + pages = "1465-1488", + eprint = "gr-qc/0310042", + archivePrefix ="arXiv", + doi = "10.1088/0264-9381/21/6/014", + SLACcitation = "%%CITATION = GR-QC/0310042;%%" +} + +@Article{Schnetter:2006yt, + required-for = "LSUThorns/QuasiLocalMeasures", + author = "Schnetter, Erik and Krishnan, Badri and Beyer, + Florian", + title = "{Introduction to dynamical horizons in numerical + relativity}", + journal = "Phys. Rev. D", + volume = 74, + year = 2006, + pages = 024028, + eprint = "gr-qc/0604015", + archivePrefix ="arXiv", + doi = "10.1103/PhysRevD.74.024028", + SLACcitation = "%%CITATION = GR-QC/0604015;%%" +} + +@Article{Thornburg:2003sf, + required-for = "EinsteinAnalysis/AHFinderDirect", + author = "Thornburg, Jonathan", + title = "{A Fast Apparent-Horizon Finder for 3-Dimensional + Cartesian Grids in Numerical Relativity}", + journal = "Class. Quantum Grav.", + volume = 21, + year = 2004, + pages = "743-766", + eprint = "gr-qc/0306056", + archivePrefix ="arXiv", + doi = "10.1088/0264-9381/21/2/026", + SLACcitation = "%%CITATION = GR-QC/0306056;%%" +}

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[svn:einsteintoolkit] WeylScal4/trunk/test/ (Rev. 66)
by roland.haas＠physics.gatech.edu 08 Nov '10

08 Nov '10

User: rhaas Date: 2010/11/08 07:08 AM Modified: /trunk/test/ teukolsky.par /trunk/test/teukolsky/ Psi4i.d.asc, Psi4i.x.asc, Psi4i.y.asc, Psi4i.z.asc, Psi4r.d.asc, Psi4r.x.asc, Psi4r.y.asc, Psi4r.z.asc Log: fix teukolsky testsuite needed two ghost zones for upwind derivatives in McLachlan, add initial extrapolatin for Gammas File Changes: Directory: /trunk/test/ ======================= File [modified]: teukolsky.par Delta lines: <Unavailable> Directory: /trunk/test/teukolsky/ ================================= File [modified]: Psi4i.d.asc Delta lines: <Unavailable> File [modified]: Psi4i.x.asc Delta lines: <Unavailable> File [modified]: Psi4i.y.asc Delta lines: <Unavailable> File [modified]: Psi4i.z.asc Delta lines: <Unavailable> File [modified]: Psi4r.d.asc Delta lines: <Unavailable> File [modified]: Psi4r.x.asc Delta lines: <Unavailable> File [modified]: Psi4r.y.asc Delta lines: <Unavailable> File [modified]: Psi4r.z.asc Delta lines: <Unavailable>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 400)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 10:03 PM Modified: /info/documentation/ index.php Log: Link the Cactus maintainers' guide as well. File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +1 -0 =================================================================== --- info/documentation/index.php 2010-11-08 03:42:24 UTC (rev 399) +++ info/documentation/index.php 2010-11-08 04:03:02 UTC (rev 400) @@ -20,6 +20,7 @@ <ul> <li><a href="UsersGuide/UsersGuide.html">User's guide</a> <li><a href="ReferenceManual/ReferenceManual.html">Reference manual</a> + <li><a href="MaintGuide/MaintGuide.html">Maintainers' guide (draft version)</a> </ul> </ul>

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[svn:einsteintoolkit] www/toolkit/capabilities/ (Rev. 399)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 09:42 PM Modified: /toolkit/capabilities/ index.php Log: Fix whisky broken link. File Changes: Directory: /toolkit/capabilities/ ================================= File [modified]: index.php Delta lines: +1 -1 =================================================================== --- toolkit/capabilities/index.php 2010-11-08 03:01:59 UTC (rev 398) +++ toolkit/capabilities/index.php 2010-11-08 03:42:24 UTC (rev 399) @@ -19,7 +19,7 @@ <h3>Relativistic Hydrodynamics</h3> -The Einstein Toolkit GRHydro modules can evolve spacetimes with general relativistic hydrodynamics in 3D Cartesian coordinates. GRHydro is based on the public version of the <a href="http://whiskycode.org/">Whisky code</a> +The Einstein Toolkit GRHydro modules can evolve spacetimes with general relativistic hydrodynamics in 3D Cartesian coordinates. GRHydro is based on the public version of the <a href="http://www.whiskycode.org/">Whisky code</a> developed originally by the EU Network on Sources of Gravitational Radiation and later by a collaboration led by AEI/SISSA. Features of GRHydro include at the moment:

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[svn:einsteintoolkit] www/info/ (Rev. 398)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 09:01 PM Modified: /info/ index.php Log: Add a link to the support page. File Changes: Directory: /info/ ================= File [modified]: index.php Delta lines: +2 -1 =================================================================== --- info/index.php 2010-11-08 02:55:59 UTC (rev 397) +++ info/index.php 2010-11-08 03:01:59 UTC (rev 398) @@ -52,7 +52,8 @@ on <code>irc.oftc.net</code> provides a more interactive way for such discussions. Our Einstein Toolkit <a href="http://blog.einsteintoolkit.org/">blog</a> provides - more content, and anyone can sign up to post to it. + more content, and anyone can sign up to post to it. Please follow the + <a href="support/index.php">Support</a> link for more details. <?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?>

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[svn:einsteintoolkit] www/info/resources/ (Rev. 397)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 08:55 PM Modified: /info/resources/ index.php Log: Fix broken link. Can someone confirm this configuration is actually used on Queen Bee? File Changes: Directory: /info/resources/ =========================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- info/resources/index.php 2010-11-08 02:40:08 UTC (rev 396) +++ info/resources/index.php 2010-11-08 02:55:59 UTC (rev 397) @@ -35,7 +35,7 @@ <td><a href="http://www.ncsa.illinois.edu/UserInfo/Resources/Hardware/Intel64Cluster/">Abe</a> (<a href="https://svn.cct.lsu.edu/repos/numrel/simfactory/optionlists/abe-mvapich2.cfg">config</a>) <a href="http://www.nics.tennessee.edu/computing-resources/kraken">Kraken</a> (<a href="https://svn.cct.lsu.edu/repos/numrel/simfactory/optionlists/kraken.cfg">config</a>) <a href="http://services.tacc.utexas.edu/index.php/ranger-user-guide">Ranger</a> (<a href="https://svn.cct.lsu.edu/repos/numrel/simfactory/optionlists/ranger-mvapich.…">config</a>) -<a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a> (<a href="https://svn.cct.lsu.edu/repos/numrel/simfactory/optionlists/eric-mvapich2.c…">config</a>) +<a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a> (<a href="https://svn.cct.lsu.edu/repos/numrel/simfactory/optionlists/queenbee-mvapic…">config</a>) </td> </tr> </table>

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[svn:einsteintoolkit] www/info/ (Rev. 396)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 08:40 PM Modified: /info/ citation.php Log: Spelling out e.g. File Changes: Directory: /info/ ================= File [modified]: citation.php Delta lines: +3 -4 =================================================================== --- info/citation.php 2010-11-08 02:21:26 UTC (rev 395) +++ info/citation.php 2010-11-08 02:40:08 UTC (rev 396) @@ -21,10 +21,9 @@ <li> Authors are requested to individually cite publications for identified key software components from the toolkit that are used to - obtain published results. These publications include details of e.g. the equations, algorithm, -and verification of components. -A list of components for which this applies -is provided below. +obtain published results. These publications include, for example, details +of the equations, algorithms, and verification of components. +A list of components for which this applies is provided below. <li> Authors should consult the full publication page for the Einstein Toolkit (not yet in place) to determine if in their judgement it would be

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 395)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 08:21 PM Modified: /info/documentation/ index.php Log: Rewriting a sentence. File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +6 -4 =================================================================== --- info/documentation/index.php 2010-11-08 01:03:31 UTC (rev 394) +++ info/documentation/index.php 2010-11-08 02:21:26 UTC (rev 395) @@ -5,14 +5,16 @@ <li>Documentation: Each thorn in the Einstein Toolkit contains some documentation (well, hopefully). Compiling thorns together and using <tt>make ThornGuide</tt> provides a single - thorn guide for all the thorns, or acess the complete + thorn guide for all the thorns. We know this is not + enough, and are working on a comprehensive users' guide just for + the toolkit. Meanwhile you can acess the complete <a href="EinsteinToolkitThornGuide/ThornGuide.html">Einstein - Toolkit Thorn Guide</a> from our web pages. We know this is not - enough, and are working on a comprehensive users' guide just for - the toolkit.</li> + Toolkit Thorn Guide</a> and other supporting documents from our web pages: +</li> </ul> <ul> +<li> <a href="EinsteinToolkitThornGuide/ThornGuide.html">Einstein Toolkit Thorn Guide</a> <li> <a href="list">List of relevant papers and reports</a> <li> Cactus Code related documentation: <ul>

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[svn:einsteintoolkit] www/release-info/ (Rev. 394)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 07:03 PM Modified: /release-info/ bluedrop__1.log, bluedrop__2.log Log: Latest bluedrop results. File Changes: Directory: /release-info/ ========================= File [modified]: bluedrop__1.log Delta lines: +6 -7 =================================================================== --- release-info/bluedrop__1.log 2010-11-08 00:00:59 UTC (rev 393) +++ release-info/bluedrop__1.log 2010-11-08 01:03:31 UTC (rev 394) @@ -813,7 +813,7 @@ CarpetReduce: staggered Success: 5 files identical DistortedBHIVP: E2xeon_test_dbh - Failure: 100 files compared, 44 differ, 44 differ significantly + Failure: 100 files compared, 44 differ, 2 differ significantly Exact: Schwarzschild_EF Failure: 112 files compared, 105 differ, 105 differ significantly Exact: bowl-evolution @@ -993,7 +993,7 @@ TwoPunctures: twopunctures Success: 144 files compared, 93 differ in the last digits WaveBinarySource: test_binary_1 - Failure: 5 files compared, 4 differ, 4 differ significantly + Success: 9 files compared, 1 differ in the last digits WaveToyC: test_rad Success: 6 files identical WaveToyC: wave_output @@ -1024,7 +1024,7 @@ Summary for configuration sim - Time -> Mon Nov 1 19:59:57 CDT 2010 + Time -> Sun Nov 7 18:12:07 CST 2010 Host -> bd-login User -> bcmundim @@ -1033,16 +1033,15 @@ Runnable tests -> 132 Total number of thorns -> 156 Number of tested thorns -> 39 - Number of tests passed -> 128 + Number of tests passed -> 129 Number passed only to - set tolerance -> 77 - Number failed -> 4 + set tolerance -> 78 + Number failed -> 3 Tests failed: E2xeon_test_dbh (from DistortedBHIVP) Schwarzschild_EF (from Exact) - test_binary_1 (from WaveBinarySource) teukolsky (from WeylScal4) ======================================================================== File [modified]: bluedrop__2.log Delta lines: +7 -9 =================================================================== --- release-info/bluedrop__2.log 2010-11-08 00:00:59 UTC (rev 393) +++ release-info/bluedrop__2.log 2010-11-08 01:03:31 UTC (rev 394) @@ -760,7 +760,7 @@ ADM: test_ADM_1 Success: 32 files identical ADM: test_ADM_2 - Failure: 32 files compared, 32 differ, 32 differ significantly + Success: 32 files identical ADM: test_ADM_3 Success: 32 files compared, 1 differ in the last digits ADM: test_ADM_4 @@ -808,7 +808,7 @@ AHFinderDirect: recoverML Failure: 5 files compared, 5 differ, 5 differ significantly DistortedBHIVP: E2xeon_test_dbh - Failure: 100 files compared, 44 differ, 44 differ significantly + Failure: 100 files compared, 44 differ, 2 differ significantly Exact: Schwarzschild_EF Failure: 112 files compared, 105 differ, 105 differ significantly Exact: bowl-evolution @@ -988,7 +988,7 @@ TestTable: test-table Success: 0 files identical WaveBinarySource: test_binary_1 - Failure: 5 files compared, 4 differ, 4 differ significantly + Success: 9 files compared, 1 differ in the last digits WaveToyC: test_rad Success: 6 files identical WaveToyC: wave_output @@ -1015,7 +1015,7 @@ Summary for configuration sim - Time -> Mon Nov 1 21:38:47 CDT 2010 + Time -> Sun Nov 7 18:36:11 CST 2010 Host -> bd-login User -> bcmundim @@ -1024,14 +1024,13 @@ Runnable tests -> 126 Total number of thorns -> 156 Number of tested thorns -> 36 - Number of tests passed -> 106 + Number of tests passed -> 108 Number passed only to - set tolerance -> 60 - Number failed -> 20 + set tolerance -> 61 + Number failed -> 18 Tests failed: - test_ADM_2 (from ADM) Kerr (from AHFinderDirect) Kerr-definition-expansion (from AHFinderDirect) Kerr-definition-expansion-product (from AHFinderDirect) @@ -1050,7 +1049,6 @@ gw3d_Exact_ord4_15 (from ML_BSSN_Test) gw3d_McLachlan_ord4_15 (from ML_BSSN_Test) gw3d_McLachlan_ord4_30 (from ML_BSSN_Test) - test_binary_1 (from WaveBinarySource) ========================================================================

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[svn:einsteintoolkit] www/about/ (Rev. 393)
by bcmsma＠astro.rit.edu 07 Nov '10

07 Nov '10

User: bmundim Date: 2010/11/07 06:00 PM Modified: /about/ licenses.php Log: Fix text. File Changes: Directory: /about/ ================== File [modified]: licenses.php Delta lines: +1 -1 =================================================================== --- about/licenses.php 2010-11-07 23:37:41 UTC (rev 392) +++ about/licenses.php 2010-11-08 00:00:59 UTC (rev 393) @@ -1,7 +1,7 @@ <?php $title='Software Licensing'; include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> -The goal of the Einstein Toolkit Consortium is to develop software in support of relativistic astrophysics research and education. A core goal of the consortium is the provide the widest availability and impact of the Einstein Toolkit all software will be developed and distributed under an <a href="http://www.opensource.org/licenses/category">open source license</a>. +The goal of the Einstein Toolkit Consortium is to develop software in support of relativistic astrophysics research and education. A core goal of the consortium is to provide the widest availability and impact of the Einstein Toolkit. Therefore all software is developed and distributed under an <a href="http://www.opensource.org/licenses/category">open source license</a>. Developers for the Einstein Toolkit are free to choose an appropriate open source license. Since this list is quite long and some

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Commits November 2010