Commits July 2014

commits@lists.einsteintoolkit.org

4 participants
7 discussions

[Carpet] branch, master, updated. ET_2014_05_v0-4-g2a53ac2
by Carpet git repositories 22 Jul '14

22 Jul '14

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>". The branch, master has been updated via 2a53ac2e49891b8db1a5bb6dbc8550eb7a260abb (commit) from 5930260426100d6a6c83aea5e80c6711e2970115 (commit) Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- commit 2a53ac2e49891b8db1a5bb6dbc8550eb7a260abb Author: Roland Haas <rhaas(a)tapir.caltech.edu> Date: Tue Jul 22 22:22:03 2014 -0700 CarpetIOASCII: make parameters steerable ----------------------------------------------------------------------- Summary of changes: Carpet/CarpetIOASCII/param.ccl | 23 ++++++++++++----------- 1 file changed, 12 insertions(+), 11 deletions(-) hooks/post-receive -- Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>

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[svn:einsteintoolkit] www/about/gallery/ (Rev. 1340)
by knarf＠cct.lsu.edu 21 Jul '14

21 Jul '14

User: knarf Date: 2014/07/21 08:56 AM Modified: /about/gallery/ tov.par Log: make tov.par work with current release (EOS parameter changes) File Changes: Directory: /about/gallery/ ========================== File [modified]: tov.par Delta lines: +2 -3 =================================================================== --- about/gallery/tov.par 2014-07-17 18:09:21 UTC (rev 1339) +++ about/gallery/tov.par 2014-07-21 13:56:30 UTC (rev 1340) @@ -189,12 +189,11 @@ # Parameters for initial star TOVSolver::TOV_Rho_Central[0] = 1.28e-3 -TOVSolver::TOV_Gamma[0] = 2 -TOVSolver::TOV_K[0] = 100 +TOVSolver::TOV_Gamma = 2 +TOVSolver::TOV_K = 100 # Set equation of state for evolution EOS_Omni::poly_gamma = 2 -EOS_Omni::poly_gamma_ini = 2 EOS_Omni::poly_k = 100 EOS_Omni::gl_gamma = 2 EOS_Omni::gl_k = 100

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[svn:einsteintoolkit] www/about/gallery/NsNsToHMNS/ (Rev. 1339)
by rhaas＠tapir.caltech.edu 17 Jul '14

17 Jul '14

User: rhaas Date: 2014/07/17 01:09 PM Modified: /about/gallery/NsNsToHMNS/ NsNsToHMNS.par, scripts.tar.gz Log: update NsNsToHMNS parfile to include buffer points in output VisIt gets confused otherwise and required complex postprocessing of the data files File Changes: Directory: /about/gallery/NsNsToHMNS/ ===================================== File [modified]: NsNsToHMNS.par Delta lines: +0 -1 =================================================================== --- about/gallery/NsNsToHMNS/NsNsToHMNS.par 2014-07-17 16:11:42 UTC (rev 1338) +++ about/gallery/NsNsToHMNS/NsNsToHMNS.par 2014-07-17 18:09:21 UTC (rev 1339) @@ -451,7 +451,6 @@ CarpetIOHDF5::out2D_xz = "no" CarpetIOHDF5::out2D_yz = "no" CarpetIOHDF5::out2D_xyplane_z = 0.0 -CarpetIOHDF5::output_buffer_points = "no" # output only active region (no buffers or symmetry or ghost points), only for out1D, out2D and out3D but not out_vars. CarpetIOHDF5::out2D_vars = " CarpetReduce::weight Grid::coordinates File [modified]: scripts.tar.gz Delta lines: +0 -0 =================================================================== (Binary files differ)

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[svn:einsteintoolkit] www/ (Rev. 1338)
by knarf＠cct.lsu.edu 17 Jul '14

17 Jul '14

User: knarf Date: 2014/07/17 11:11 AM Modified: / .htaccess Log: add video mime type for mp4 File Changes: Directory: / ============ File [modified]: .htaccess Delta lines: +1 -0 =================================================================== --- .htaccess 2014-05-22 15:12:01 UTC (rev 1337) +++ .htaccess 2014-07-17 16:11:42 UTC (rev 1338) @@ -1,2 +1,3 @@ AddType application/pdf pdf AddType video/ogg ogv +AddType video/mp4 mp4

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 299)
by schnetter＠cct.lsu.edu 16 Jul '14

16 Jul '14

User: eschnett Date: 2014/07/16 07:08 AM Modified: /trunk/ einsteintoolkit.bib Log: Update some url and eprint entries File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +5 -7 =================================================================== --- trunk/einsteintoolkit.bib 2014-07-14 16:28:11 UTC (rev 298) +++ trunk/einsteintoolkit.bib 2014-07-16 12:08:27 UTC (rev 299) @@ -753,9 +753,7 @@ volume = "21", number = {1-2}, pages = {1-16}, - url = {http://dx.doi.org/10.3233/SPR-130360}, doi = {10.3233/SPR-130360}, - note = {(\href{http://arxiv.org/abs/1307.6488}{arXiv:1307.6488})}, } @article{Bocquet:1995je, @@ -849,8 +847,7 @@ year = 2011, note = {Proceedings of the International Conference on Computational Science, ICCS 2011}, issn = {1877-0509}, - doi = {DOI: 10.1016/j.procs.2011.04.079}, - url = {http://www.sciencedirect.com/science/article/pii/S1877050911001372}, + doi = {10.1016/j.procs.2011.04.079}, } @Article{Brill:1959zz, @@ -1526,7 +1523,7 @@ journal = "Living Rev. Relativity", volume = 11, number = 7, - pages = "7. URL (cited on 01-01-2012): \url{http://www.livingreviews.org/lrr-2008-7}", + url={http://www.livingreviews.org/lrr-2008-7} year = 2008, } @@ -2428,7 +2425,7 @@ publisher = {Springer Verlag}, address = {Berlin Heidelberg New York}, isbn = {978-3-642-11841-8}, - pages = {272--279}, + pages = {272-279}, year = {2009}, url = {http://www.springer.com/computer/communication+networks/book/978-3-642-11841-8}, } @@ -2472,7 +2469,8 @@ title = "Cactus: Issues for Sustainable Simulation Software", year = "2014", journal = {Journal of Open Research Software}, - note = {(\href{http://arxiv.org/abs/1309.1812}{arXiv:1309.1812})}, + eprint={arXiv:1309.1812 [cs.CE]}, + url = {http://arxiv.org/abs/1309.1812}, } @Misc{Lorene:web,

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 298)
by knarf＠cct.lsu.edu 14 Jul '14

14 Jul '14

User: knarf Date: 2014/07/14 11:28 AM Modified: /trunk/ einsteintoolkit.bib Log: update reference File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +10 -3 =================================================================== --- trunk/einsteintoolkit.bib 2014-07-07 15:53:48 UTC (rev 297) +++ trunk/einsteintoolkit.bib 2014-07-14 16:28:11 UTC (rev 298) @@ -2867,9 +2867,16 @@ author = "De Pietri, Roberto and Feo, Alessandra and Franci, Luca and LÃ¶ffler, Frank", title = "{Neutron Star instabilities in full General Relativity - using a $\Gamma=2.75$ ideal fluid}", - year = "2014", - journal = "Accepted at Phys. Rev. D", + using a $\mathrm{$\Gamma${}}=2.75$ ideal fluid}", + journal = {Phys. Rev. D}, + volume = {90}, + issue = {2}, + pages = {024034}, + numpages = {15}, + year = {2014}, + month = {Jul}, + publisher = {American Physical Society}, + doi = {10.1103/PhysRevD.90.024034}, eprint = "arXiv:gr-qc/1403.8066", }

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 297)
by knarf＠cct.lsu.edu 07 Jul '14

07 Jul '14

User: knarf Date: 2014/07/07 10:53 AM Added: /trunk/ git_testing.th Log: add git_testing.th: a copy of einsteintoolkit.th, with currently only the flesh being changed File Changes: Directory: /trunk/ ================== File [added]: git_testing.th Delta lines: +411 -0 =================================================================== --- trunk/git_testing.th (rev 0) +++ trunk/git_testing.th 2014-07-07 15:53:48 UTC (rev 297) @@ -0,0 +1,411 @@ +# Component list for the Einstein Toolkit <http://einsteintoolkit.org/> +# $Revision$ +# $Date$ +# $HeadURL$ + +!CRL_VERSION = 1.0 + +!DEFINE ROOT = Cactus +!DEFINE ARR = $ROOT/arrangements +!DEFINE COMPONENTLIST_TARGET = $ROOT/thornlists/ + + + +# A note on CUDA and OpenCL: + +# The thorns supporting and using CUDA and OpenCL are working and are +# part of the Einstein Toolkit. However, these thorns are currently +# commented out in this thorn list because most machines do not have +# CUDA or OpenCL libraries installed, and there are no good, free CUDA +# or OpenCL implementations yet which could be shipped with Cactus. + +# If you want to experiment with CUDA or OpenCL and use these thorns +# (or look at their documentation), then uncomment these thorns in +# this thorn list, and use GetComponents to download these thorns. + +# You have to uncomment these thorns (not here, but further below): +# - CactusExamples/HelloWorldCUDA +# - CactusExamples/HelloWorldOpenCL +# - CactusExamples/WaveToyOpenCL +# - CactusUtils/OpenCLRunTime +# - CactusUtils/Accelerator +# - ExternalLibraries/OpenCL +# - McLachlan/ML_WaveToy_CL + +# To download these thorns via GetComponents, use then the following +# command (on the same system where you originally used +# GetComponents): + +# cd Cactus (or whatever your source tree is called) +# bin/GetComponents --update --root=. manifest/einsteintoolkit.th + + + +# This thorn list +!TARGET = $ROOT +!TYPE = svn +!URL = https://svn.einsteintoolkit.org/$1/trunk +!CHECKOUT = manifest + +# Cactus Flesh +!TARGET = $ROOT +!TYPE = git +!URL = https://bitbucket.org/cactuscode/cactus.git +!NAME = flesh +!CHECKOUT = CONTRIBUTORS COPYRIGHT doc lib Makefile src + +# Simulation Factory +!TARGET = $ROOT +!TYPE = svn +!URL = https://svn.cct.lsu.edu/repos/numrel/$1/trunk +!CHECKOUT = simfactory2 +!NAME = simfactory + +# Example parameter files +!TARGET = $ROOT +!TYPE = svn +!URL = https://svn.einsteintoolkit.org/cactus/EinsteinExamples/trunk/$1 +!CHECKOUT = par + +# Various Cactus utilities +!TARGET = $ROOT +!TYPE = svn +!URL = https://svn.cactuscode.org/Utilities/trunk +!CHECKOUT = . +!NAME = utils + +# The GetComponents script +!TARGET = $ROOT/bin +!TYPE = git +!URL = https://github.com/gridaphobe/CRL.git +!CHECKOUT = GetComponents + + + +# Cactus thorns +!TARGET = $ARR +!TYPE = svn +!URL = https://svn.cactuscode.org/arrangements/$1/$2/trunk +!CHECKOUT = CactusElliptic/EllPETSc CactusExamples/HelloWorldCUDA CactusExamples/HelloWorldOpenCL CactusExamples/WaveToyOpenCL CactusTest/TestAllTypes CactusUtils/Accelerator CactusUtils/OpenCLRunTime +CactusBase/Boundary +CactusBase/CartGrid3D +CactusBase/CoordBase +CactusBase/Fortran +CactusBase/InitBase +CactusBase/IOASCII +CactusBase/IOBasic +CactusBase/IOUtil +CactusBase/SymBase +CactusBase/Time + +CactusConnect/HTTPD +CactusConnect/HTTPDExtra +CactusConnect/Socket + +CactusDoc/CoreDoc + +CactusElliptic/EllBase +#DISABLED CactusElliptic/EllPETSc +CactusElliptic/EllSOR + +CactusExamples/DemoInterp +CactusExamples/FleshInfo +CactusExamples/HelloWorld +#DISABLED CactusExamples/HelloWorldCUDA +#DISABLED CactusExamples/HelloWorldOpenCL +CactusExamples/IDWaveMoL +CactusExamples/SampleBoundary +CactusExamples/SampleIO +CactusExamples/TimerInfo +CactusExamples/WaveMoL +CactusExamples/WaveToy1DF77 +CactusExamples/WaveToy2DF77 +#DISABLED CactusExamples/WaveToyOpenCL + +CactusIO/IOJpeg + +CactusNumerical/Cartoon2D +CactusNumerical/Dissipation +CactusNumerical/InterpToArray +CactusNumerical/LocalInterp +CactusNumerical/LocalReduce +CactusNumerical/MoL +CactusNumerical/Noise +CactusNumerical/Norms +CactusNumerical/Periodic +CactusNumerical/ReflectionSymmetry +CactusNumerical/RotatingSymmetry180 +CactusNumerical/RotatingSymmetry90 +CactusNumerical/Slab +CactusNumerical/SlabTest +CactusNumerical/SpaceMask +CactusNumerical/SphericalSurface + +CactusPUGH/PUGH +CactusPUGH/PUGHInterp +CactusPUGH/PUGHReduce +CactusPUGH/PUGHSlab + +CactusPUGHIO/IOHDF5 +CactusPUGHIO/IOHDF5Util + +#DISABLED CactusTest/TestAllTypes +CactusTest/TestArrays +CactusTest/TestComplex +CactusTest/TestCoordinates +CactusTest/TestFortranCrayPointers +CactusTest/TestFortranDependencies1 +CactusTest/TestFortranDependencies2 +CactusTest/TestFpointerNULL +CactusTest/TestFreeF90 +CactusTest/TestGlobalReduce +CactusTest/TestInclude1 +CactusTest/TestInclude2 +CactusTest/TestLocalReduce +CactusTest/TestLoop +CactusTest/TestMath +CactusTest/TestMoL +CactusTest/TestPar +CactusTest/TestReduce +CactusTest/TestSchedule +CactusTest/TestStrings +CactusTest/TestTable +CactusTest/TestTimers +CactusTest/TestTypes + +#DISABLED CactusUtils/Accelerator +CactusUtils/Formaline +CactusUtils/NaNChecker +CactusUtils/Nice +CactusUtils/NoMPI +#DISABLED CactusUtils/OpenCLRunTime +CactusUtils/TerminationTrigger +CactusUtils/TimerReport + +CactusWave/IDScalarWave +CactusWave/IDScalarWaveC +CactusWave/IDScalarWaveCXX +CactusWave/IDScalarWaveElliptic +CactusWave/WaveBinarySource +CactusWave/WaveToyC +CactusWave/WaveToyCXX +CactusWave/WaveToyExtra +CactusWave/WaveToyF77 +CactusWave/WaveToyF90 +CactusWave/WaveToyFreeF90 + + + +# The Einstein Toolkit +!TARGET = $ARR +!TYPE = svn +!URL = https://svn.einsteintoolkit.org/cactus/$1/$2/trunk +!CHECKOUT = +EinsteinAnalysis/ADMAnalysis +EinsteinAnalysis/AHFinder +EinsteinAnalysis/AHFinderDirect +EinsteinAnalysis/CalcK +EinsteinAnalysis/EHFinder +EinsteinAnalysis/Extract +EinsteinAnalysis/Hydro_Analysis +EinsteinAnalysis/Multipole +EinsteinAnalysis/WeylScal4 + +EinsteinBase/ADMBase +EinsteinBase/ADMCoupling # deprecated +EinsteinBase/ADMMacros # deprecated +EinsteinBase/Constants +EinsteinBase/CoordGauge +EinsteinBase/EOS_Base +EinsteinBase/HydroBase +EinsteinBase/StaticConformal +EinsteinBase/TmunuBase + +EinsteinEOS/EOS_Hybrid +EinsteinEOS/EOS_IdealFluid +EinsteinEOS/EOS_Omni +EinsteinEOS/EOS_Polytrope + +EinsteinEvolve/GRHydro +EinsteinEvolve/NewRad + +EinsteinInitialData/DistortedBHIVP +EinsteinInitialData/Exact +EinsteinInitialData/GRHydro_InitData +EinsteinInitialData/Hydro_InitExcision +EinsteinInitialData/IDAnalyticBH +EinsteinInitialData/IDAxiBrillBH +EinsteinInitialData/IDAxiOddBrillBH +EinsteinInitialData/IDBrillData +EinsteinInitialData/IDConstraintViolate +EinsteinInitialData/IDFileADM +EinsteinInitialData/IDLinearWaves +EinsteinInitialData/Meudon_Bin_BH +EinsteinInitialData/Meudon_Bin_NS +EinsteinInitialData/Meudon_Mag_NS +EinsteinInitialData/NoExcision +EinsteinInitialData/RotatingDBHIVP +EinsteinInitialData/TOVSolver +EinsteinInitialData/TwoPunctures + +EinsteinUtils/SetMask_SphericalSurface +EinsteinUtils/TGRtensor + +PITTNullCode/NullConstr +PITTNullCode/NullDecomp +PITTNullCode/NullEvolve +PITTNullCode/NullExact +PITTNullCode/NullGrid +PITTNullCode/NullInterp +PITTNullCode/NullNews +PITTNullCode/NullPsiInt +PITTNullCode/NullSHRExtract +PITTNullCode/NullVars +PITTNullCode/SphericalHarmonicDecomp +PITTNullCode/SphericalHarmonicRecon + +!TARGET = $ARR +!TYPE = git +!URL = https://github.com/rhaas80/Outflow.git +!REPO_PATH= ../$2 +!CHECKOUT = +EinsteinAnalysis/Outflow + +!TARGET = $ARR +!TYPE = git +!URL = https://github.com/barrywardell/EinsteinExact.git +!REPO_PATH= $2 +!CHECKOUT = EinsteinExact/doc EinsteinExact/m EinsteinExact/tests +EinsteinExact/EinsteinExact_Test +EinsteinExact/GaugeWave +EinsteinExact/KerrSchild +EinsteinExact/Minkowski +EinsteinExact/ModifiedSchwarzschildBL +EinsteinExact/ShiftedGaugeWave +EinsteinExact/Vaidya2 + + +# Additional Cactus thorns +!TARGET = $ARR +!TYPE = svn +!URL = https://svn.cactuscode.org/projects/$1/$2/trunk +!CHECKOUT = ExternalLibraries/OpenCL ExternalLibraries/PETSc +ExternalLibraries/BLAS +ExternalLibraries/FFTW3 +ExternalLibraries/GSL +ExternalLibraries/HDF5 +ExternalLibraries/hwloc +ExternalLibraries/LAPACK +ExternalLibraries/libjpeg +ExternalLibraries/LORENE +ExternalLibraries/MPI +#DISABLED ExternalLibraries/OpenCL +ExternalLibraries/OpenSSL +ExternalLibraries/PAPI +ExternalLibraries/pciutils +#DISABLED ExternalLibraries/PETSc +ExternalLibraries/zlib + +TAT/TATelliptic +#DISABLED TAT/TATPETSc + + + +# Various thorns from the AEI +!TARGET = $ARR +!TYPE = svn +!URL = https://svn.aei.mpg.de/numrel/$1/$2/trunk +!CHECKOUT = +AEIThorns/ADMMass +AEIThorns/AEILocalInterp +AEIThorns/PunctureTracker +AEIThorns/SystemStatistics +AEIThorns/Trigger + + + +# Various thorns from LSU +!TARGET = $ARR +!TYPE = svn +!URL = https://svn.cct.lsu.edu/repos/numrel/$1/$2/trunk +!CHECKOUT = +LSUThorns/PeriodicCarpet +LSUThorns/QuasiLocalMeasures +LSUThorns/SummationByParts +LSUThorns/Vectors + + + +# From Kranc (required e.g. by McLachlan) +!TARGET = $ARR +!TYPE = git +!URL = https://github.com/ianhinder/Kranc.git +!REPO_PATH= Auxiliary/Cactus +!CHECKOUT = +KrancNumericalTools/GenericFD + + + +# McLachlan, the spacetime code +!TARGET = $ARR +!TYPE = git +!AUTH_URL = carpetgit@carpetcode.org:McLachlan +!URL = git://carpetcode.org/McLachlan +!REPO_PATH= $2 +!CHECKOUT = McLachlan/doc McLachlan/m McLachlan/par McLachlan/ML_WaveToy_CL +McLachlan/ML_ADMConstraints +McLachlan/ML_ADMQuantities +McLachlan/ML_BSSN +McLachlan/ML_BSSN_Helper +McLachlan/ML_BSSN_Test +McLachlan/ML_CCZ4 +McLachlan/ML_CCZ4_Helper +McLachlan/ML_CCZ4_Test +McLachlan/ML_WaveToy +#DISABLED McLachlan/ML_WaveToy_CL +McLachlan/ML_WaveToy_Test + + + +# Carpet, the AMR driver +!TARGET = $ARR +!TYPE = git +!AUTH_URL = carpetgit@carpetcode.org:carpet +!URL = git://carpetcode.org/carpet +!CHECKOUT = Carpet/doc +Carpet/Carpet +Carpet/CarpetEvolutionMask +Carpet/CarpetIOASCII +Carpet/CarpetIOBasic +Carpet/CarpetIOHDF5 +Carpet/CarpetIOScalar +Carpet/CarpetInterp +Carpet/CarpetInterp2 +Carpet/CarpetLib +Carpet/CarpetMask +Carpet/CarpetReduce +Carpet/CarpetRegrid +Carpet/CarpetRegrid2 +Carpet/CarpetSlab +Carpet/CarpetTracker +Carpet/CycleClock +Carpet/LoopControl +Carpet/Timers + +CarpetExtra/CarpetIntegrateTest +CarpetExtra/CarpetProlongateTest +CarpetExtra/CarpetRegridTest +CarpetExtra/HighOrderWaveTest +CarpetExtra/ReductionTest +CarpetExtra/ReductionTest2 +CarpetExtra/ReductionTest3 +CarpetExtra/RegridSyncTest +CarpetExtra/TestCarpetGridInfo +CarpetExtra/TestLoopControl + + + +# Private thorns +!TARGET = $ARR +!TYPE = ignore +!CHECKOUT =

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Commits July 2014