Commits June 2014

commits@lists.einsteintoolkit.org

5 participants
36 discussions

[svn:einsteintoolkit] manifest/trunk/ (Rev. 296)
by knarf＠cct.lsu.edu 27 Jun '14

27 Jun '14

User: knarf Date: 2014/06/27 12:16 PM Modified: /trunk/ einsteintoolkit.bib Log: some new citations File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +51 -0 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-26 21:14:27 UTC (rev 295) +++ trunk/einsteintoolkit.bib 2014-06-27 17:16:14 UTC (rev 296) @@ -191,6 +191,18 @@ adsnote = {Provided by the SAO/NASA Astrophysics Data System} } +@inproceedings{Allen:2011aa, + author = {Gabrielle Allen and Werner Benger and Andrei Hutanu and Shantenu Jha and Frank L{\"o}ffler and Erik Schnetter}, + title = "{A practical and comprehensive graduate course preparing students for research involving scientific computing}", + booktitle= {Proceedings of the International Conference on Computational Science, ICCS 2011}, + pages = {1927-1936}, + year = {2011}, + month = {Jan}, + location = {Nanyang Technological University, Singapore}, + publisher = {Procedia Computer Science}, + doi = "10.1016/j.procs.2011.04.210", +} + @article{Aloy:1999ne, author = "Aloy, M.A. and Ibanez, J.M. and Marti, J.M. and Muller, E.", @@ -2437,6 +2449,32 @@ eprint = "arXiv:1111.3344 [gr-qc]", } +@inproceedings{Loeffler:2011tg, + author = {L\"{o}ffler, Frank and Allen, Gabrielle and Benger, Werner and Hutanu, Andrei and Jha, Shantenu and Schnetter, Erik}, + title = {Using the {T}era{G}rid to teach scientific computing}, + booktitle = {Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery}, + series = {TG '11}, + year = {2011}, + isbn = {978-1-4503-0888-5}, + location = {Salt Lake City, Utah}, + pages = {55:1--55:7}, + articleno = {55}, + numpages = {7}, + url = {http://doi.acm.org/10.1145/2016741.2016800}, + doi = {10.1145/2016741.2016800}, + acmid = {2016800}, + publisher = {ACM}, + address = {New York, NY, USA}, +} + +@article{Loeffler:2013aa, + author = "Frank L{\"o}ffler and Steven R. Brandt and Gabrielle Allen and Erik Schnetter", + title = "Cactus: Issues for Sustainable Simulation Software", + year = "2014", + journal = {Journal of Open Research Software}, + note = {(\href{http://arxiv.org/abs/1309.1812}{arXiv:1309.1812})}, +} + @Misc{Lorene:web, key = {LORENE}, title = {{LORENE}: {L}angage {O}bjet pour la {RE}lativit\'e {N}um\'eriqu{E}}, @@ -2712,6 +2750,19 @@ eprint = "arXiv:astro-ph/0612638", } +@article{Ott:2011bb, + author={Ott, C.D. and OâConnor, E. and Peng, F. and Reisswig, C. and Sperhake, U. and Schnetter, E. and Abdikamalov, E. and Diener, P. and LÃ¶ffler, F. and Hawke, I. and Meakin, C.A. and Burrows, A.}, + title={New open-source approaches to the modeling of stellar collapse and the formation of black holes}, + journal={Astrophysics and Space Science}, + year={2011}, + issn={0004-640X}, + volume={336}, + number={1}, + doi={10.1007/s10509-010-0553-1}, + publisher={Springer Netherlands}, + pages={151-156}, +} + @article{Ott:2012mr, author = "Ott, Christian D. and Abdikamalov, Ernazar and MÃ¶sta, Philipp and Haas, Roland and Drasco, Steve and others",

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 295)
by knarf＠cct.lsu.edu 26 Jun '14

26 Jun '14

User: knarf Date: 2014/06/26 04:14 PM Modified: /trunk/ einsteintoolkit.bib Log: correct key File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +1 -1 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-26 21:13:32 UTC (rev 294) +++ trunk/einsteintoolkit.bib 2014-06-26 21:14:27 UTC (rev 295) @@ -204,7 +204,7 @@ eprint = "arXiv:astro-ph/9903352", } -@misc{alpacaweb, +@misc{alpaca:web, title = {{Alpaca}: Tools for Application-Level Profiling and Correctness Analysis}, url = {http://www.cct.lsu.edu/~eschnett/Alpaca/}

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 294)
by knarf＠cct.lsu.edu 26 Jun '14

26 Jun '14

User: knarf Date: 2014/06/26 04:13 PM Modified: /trunk/ einsteintoolkit.bib Log: more refs File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +19 -0 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-26 21:12:12 UTC (rev 293) +++ trunk/einsteintoolkit.bib 2014-06-26 21:13:32 UTC (rev 294) @@ -2104,6 +2104,25 @@ url = {http://www.cct.lsu.edu/CCT-TR/CCT-TR-2009-11}, } +@article{Hutanu2010a, + author = {Andrei Hutanu and Erik Schnetter and Werner Benger + and Eloisa Bentivegna and Alex Clary and Peter + Diener and Jinghua Ge and Robert Kooima and Oleg + Korobkin and Kexi Liu and Frank L{\"o}ffler and Ravi + Paruchuri and Jian Tao and Cornelius Toole and Adam + Yates and Gabrielle Allen}, + title = {Large-scale Problem Solving Using Automatic Code + Generation and Distributed Visualization}, + journal = {Scalable Computing, Practice and Experience. Scientific + International Journal for Parallel and Distributed Computing}, + volume = {11}, + number = {2}, + pages = {205-220}, + year = {2010}, + month = {June}, + url = {http://www.scpe.org/vols/vol11/no2/SCPE_11_2_10.pdf}, +} + @techreport{Hyman:1976cm, author = "James M. Hyman", title = "The Method of Lines Solution

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 293)
by knarf＠cct.lsu.edu 26 Jun '14

26 Jun '14

User: knarf Date: 2014/06/26 04:12 PM Modified: /trunk/ einsteintoolkit.bib Log: more refs File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +19 -13 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-26 21:08:37 UTC (rev 292) +++ trunk/einsteintoolkit.bib 2014-06-26 21:12:12 UTC (rev 293) @@ -121,19 +121,6 @@ {http://www.slac.stanford.edu/spires/find/hep/www?rawcmd=find+doi+10.1103/PhysRevC.58.1804}, } -@article{Aloy:1999ne, - author = "Aloy, M.A. and Ibanez, J.M. and Marti, J.M. and Muller, - E.", - title = "{Genesis: a high resolution code for 3-D relativistic - hydrodynamics}", - journal = "Astrophys. J. Suppl.", - volume = "122", - pages = "151-166", - doi = "10.1086/313214", - year = "1999", - eprint = "arXiv:astro-ph/9903352", -} - @Article{Alcubierre:1999ab, author = {Miguel Alcubierre and Steven Brandt and Bernd Br{\"u}gmann and Daniel Holz and Edward Seidel and @@ -204,6 +191,25 @@ adsnote = {Provided by the SAO/NASA Astrophysics Data System} } +@article{Aloy:1999ne, + author = "Aloy, M.A. and Ibanez, J.M. and Marti, J.M. and Muller, + E.", + title = "{Genesis: a high resolution code for 3-D relativistic + hydrodynamics}", + journal = "Astrophys. J. Suppl.", + volume = "122", + pages = "151-166", + doi = "10.1086/313214", + year = "1999", + eprint = "arXiv:astro-ph/9903352", +} + +@misc{alpacaweb, + title = {{Alpaca}: Tools for Application-Level Profiling and + Correctness Analysis}, + url = {http://www.cct.lsu.edu/~eschnett/Alpaca/} +} + @article{Anderson:2006ay, author = "Anderson, Matthew and Hirschmann, Eric and Liebling, Steven L. and Neilsen, David",

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 292)
by knarf＠cct.lsu.edu 26 Jun '14

26 Jun '14

User: knarf Date: 2014/06/26 04:08 PM Modified: /trunk/ einsteintoolkit.bib Log: some new references File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +72 -4 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-25 19:17:10 UTC (rev 291) +++ trunk/einsteintoolkit.bib 2014-06-26 21:08:37 UTC (rev 292) @@ -71,6 +71,18 @@ ##A ############################################################################ +@article{Ahmed:2009qm, + author = "Ahmed, Maqbool and Rideout, David", + title = "{Indications of de Sitter Spacetime from Classical + Sequential Growth Dynamics of Causal Sets}", + journal = "Phys.Rev.", + volume = "D81", + pages = "083528", + doi = "10.1103/PhysRevD.81.083528", + year = "2010", + eprint = "arXiv:gr-qc/0909.4771", +} + @Article{Ajith:2007kx, author = {Parameswaran Ajith and Stanislav Babak and Yanbei Chen and Martin Hewitson and Badri Krishnan and @@ -716,7 +728,6 @@ } @article{Blazewicz:2013aa, - status = {refereed}, author = "Blazewicz, Marek and Hinder, Ian and Koppelman, David M. and Brandt, Steven R. and Ciznicki, Milosz and Kierzynka, Michal and L{\"o}ffler, Frank and Schnetter, Erik and Tao, Jian", title = "{F}rom physics model to results: {A}n optimizing framework for cross-architecture code generation", journal = "Scientific Programming", @@ -727,7 +738,6 @@ url = {http://dx.doi.org/10.3233/SPR-130360}, doi = {10.3233/SPR-130360}, note = {(\href{http://arxiv.org/abs/1307.6488}{arXiv:1307.6488})}, - receiveddate = {2013-05-21}, } @article{Bocquet:1995je, @@ -811,8 +821,6 @@ } @Inproceedings{Brandt:2011a, - status = {refereed}, - receiveddate={2011-01-01}, title = {The Prickly Pear Archive}, author = {Steven R. Brandt and Oleg Korobkin and Frank L{\"o}ffler and Jian Tao and Erik Schnetter and Ian Hinder @@ -884,6 +892,18 @@ SLACcitation = "%%CITATION = 0809.3533;%%" } +@article{Brunnemann:2010yv, + author = "Brunnemann, Johannes and Rideout, David", + title = "{Oriented Matroids -- Combinatorial Structures Underlying + Loop Quantum Gravity}", + journal = "Class.Quant.Grav.", + volume = "27", + pages = "205008", + doi = "10.1088/0264-9381/27/20/205008", + year = "2010", + eprint = "arXiv:gr-qc/1003.2348", +} + @Article{Buonanno:2006ui, author = "Buonanno, Alessandra and Cook, Gregory B. and Pretorius, Frans", @@ -1118,6 +1138,11 @@ year = 1984, } +@misc{cudaweb, + title = {{CUDA}: Compute Unified Device Architecture}, + url = {http://developer.nvidia.com/category/zone/cuda-zone}, +} + ##D ############################################################################ @ARTICLE{Devore:1991aa, author = {{Devore}, C.~R.}, @@ -2058,6 +2083,21 @@ SLACcitation = "%%CITATION = 0706.0904;%%" } +@TechReport{Hutanu2009a, + author = {Andrei Hutanu and Erik Schnetter and Werner Benger + and Eloisa Bentivegna and Alex Clary and Peter + Diener and Jinghua Ge and Robert Kooima and Oleg + Korobkin and Kexi Liu and Frank L{\"o}ffler and Ravi + Paruchuri and Jian Tao and Cornelius Toole and Adam + Yates and Gabrielle Allen}, + title = {Large-scale Problem Solving Using Automatic Code + Generation and Distributed Visualization}, + institution = {Louisiana State University}, + number = {CCT-TR-2009-11}, + year = {2009}, + url = {http://www.cct.lsu.edu/CCT-TR/CCT-TR-2009-11}, +} + @techreport{Hyman:1976cm, author = "James M. Hyman", title = "The Method of Lines Solution @@ -2339,6 +2379,23 @@ year = "2006", } +@inproceedings{Loeffler2009a, + author = {Frank L{\"o}ffler and Jian Tao and Gabrielle Allen + and Erik Schnetter}, + title = {Benchmarking Parallel {I/O} Performance for a Large + Scale Scientific Application on the {TeraGrid}}, + booktitle = {High Performance Computing and Applications}, + note = {Second International Conference on + High Performance Computing and Applications + (HPCA2009), Shanghai, China}, + publisher = {Springer Verlag}, + address = {Berlin Heidelberg New York}, + isbn = {978-3-642-11841-8}, + pages = {272--279}, + year = {2009}, + url = {http://www.springer.com/computer/communication+networks/book/978-3-642-11841-8}, +} + @article{Loffler:2011ay, author = "L{\"{o}}ffler, Frank and Faber, Joshua and Bentivegna, Eloisa and Bode, Tanja and Diener, Peter and Haas, Roland and Hinder, @@ -2704,6 +2761,17 @@ eprint = "arXiv:1011.2976 [astro-ph.HE]", } +@article{Philpott:2009fz, + author = "Philpott, Lydia", + title = "{Particle simulations in causal set theory}", + journal = "Class.Quant.Grav.", + volume = "27", + pages = "042001", + doi = "10.1088/0264-9381/27/4/042001", + year = "2010", + eprint = "arXiv:gr-qc/0911.5595", +} + @Article{Pfeiffer:2007yz, author = {{Pfeiffer}, H.~P. and {Brown}, D.~A. and {Kidder}, L.~E. and {Lindblom}, L. and {Lovelace}, G. and

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 291)
by sbrandt＠cct.lsu.edu 25 Jun '14

25 Jun '14

User: sbrandt Date: 2014/06/25 02:17 PM Modified: /trunk/ einsteintoolkit.bib Log: added a few things File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +33 -0 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-23 20:39:04 UTC (rev 290) +++ trunk/einsteintoolkit.bib 2014-06-25 19:17:10 UTC (rev 291) @@ -810,6 +810,23 @@ organization={IEEE} } +@Inproceedings{Brandt:2011a, + status = {refereed}, + receiveddate={2011-01-01}, + title = {The Prickly Pear Archive}, + author = {Steven R. Brandt and Oleg Korobkin and Frank L{\"o}ffler + and Jian Tao and Erik Schnetter and Ian Hinder + and Dennis Castleberry and Michael Thomas}, + journal = {Procedia Computer Science}, + volume = 4, + pages = {750 - 758}, + year = 2011, + note = {Proceedings of the International Conference on Computational Science, ICCS 2011}, + issn = {1877-0509}, + doi = {DOI: 10.1016/j.procs.2011.04.079}, + url = {http://www.sciencedirect.com/science/article/pii/S1877050911001372}, +} + @Article{Brill:1959zz, author = "Brill, Dieter R.", title = "{On the positive definite mass of the @@ -919,6 +936,13 @@ url = {http://www.cactuscode.org/} } +@Misc{Cactusprize:web, + suggested-for ={Cactus/Cactus}, + title = {{Cactus Computational Toolkit Prizes}}, + key = {Cactus developers}, + url = {http://cactuscode.org/media/prizes/} +} + @manual{CactusUsersGuide:web, key = {cactususersguide}, title = {{C}actus Users' Guide}, @@ -3439,6 +3463,15 @@ } ##T ############################################################################ +@article{Tao:2013hpc, + title={An hpc framework for large scale simulations and visualizations of oil spill trajectories}, + author={Tao, Jian and Benger, Werner and Hu, Kelin and Mathews, Edwin and Ritter, Marcel and Diener, Peter and Kaiser, Carola and Zhao, Haihong and Allen, Gabrielle and Chen, Qin}, + journal={Coastal Hazards}, + number={2}, + pages={13}, + year={2013}, + publisher={ASCE Publications} +} @article{Takamoto:2011ng, author = "Takamoto, Makoto and Inoue, Tsuyoshi",

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 290)
by knarf＠cct.lsu.edu 23 Jun '14

23 Jun '14

User: knarf Date: 2014/06/23 03:39 PM Modified: /trunk/ einsteintoolkit.bib Log: update and add papers File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +41 -2 =================================================================== --- trunk/einsteintoolkit.bib 2014-06-10 23:45:07 UTC (rev 289) +++ trunk/einsteintoolkit.bib 2014-06-23 20:39:04 UTC (rev 290) @@ -1510,6 +1510,20 @@ eprint = "arXiv:1111.1677 [gr-qc]", } +@article{Franci:2013mma, + author = "Franci, Luca and De Pietri, Roberto and Dionysopoulou, + Kyriaki and Rezzolla, Luciano", + title = "{Dynamical bar-mode instability in rotating and + magnetized relativistic stars}", + journal = "Phys.Rev.", + number = "10", + volume = "D88", + pages = "104028", + doi = "10.1103/PhysRevD.88.104028", + year = "2013", + eprint = "arXiv:gr-qc/1308.3989", +} + ##G ############################################################################ @Book{Galassi:2009, @@ -2074,6 +2088,17 @@ ##K ############################################################################ +@article{Kelly:2012nd, + author = "Kelly, Bernard J. and Baker, John G.", + title = "{Decoding mode mixing in black-hole merger ringdown}", + journal = "Phys.Rev.", + volume = "D87", + pages = "084004", + doi = "10.1103/PhysRevD.87.084004", + year = "2013", + eprint = "arXiv:1212.5553", +} + @article{Kiuchi:2009jt, author = "Kiuchi, Kenta and Sekiguchi, Yuichiro and Shibata, Masaru and Taniguchi, Keisuke", @@ -2581,6 +2606,19 @@ eprint = "arXiv:astro-ph/0612638", } +@article{Ott:2012mr, + author = "Ott, Christian D. and Abdikamalov, Ernazar and MÃ¶sta, + Philipp and Haas, Roland and Drasco, Steve and others", + title = "{General-Relativistic Simulations of Three-Dimensional + Core-Collapse Supernovae}", + journal = "Astrophys. J.", + volume = "768", + pages = "115", + doi = "10.1088/0004-637X/768/2/115", + year = "2013", + eprint = "arXiv:astro-ph.HE/1210.6674", +} + ##P ############################################################################ @INPROCEEDINGS{Pandharipande:1989hn, @@ -2660,9 +2698,10 @@ @article{DePietri:2014mea, author = "De Pietri, Roberto and Feo, Alessandra and Franci, Luca and LÃ¶ffler, Frank", - title = "{Stiffness effects on the dynamics of the bar-mode - instability of Neutron Stars in full General Relativity}", + title = "{Neutron Star instabilities in full General Relativity + using a $\Gamma=2.75$ ideal fluid}", year = "2014", + journal = "Accepted at Phys. Rev. D", eprint = "arXiv:gr-qc/1403.8066", }

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[svn:einsteintoolkit] NullExact/trunk/ (Rev. 20)
by rhaas＠tapir.caltech.edu 18 Jun '14

18 Jun '14

User: rhaas Date: 2014/06/18 04:01 PM Modified: /trunk/ README Log: NullExact: update publication information of CCE paper add published paper reference. Correct previous commit. File Changes: Directory: /trunk/ ================== File [modified]: README Delta lines: +1 -1 =================================================================== --- trunk/README 2014-06-18 20:54:22 UTC (rev 19) +++ trunk/README 2014-06-18 21:01:32 UTC (rev 20) @@ -35,7 +35,7 @@ Title: Characteristic Extraction Tool for Gravitational Waveforms Authors: M.C. Babiuc, B. Szilagyi, J. Winicour, Y. Zlochower - arXiv:1011.4223, Phys Rev D 84, 044057, + arXiv:1011.4223, Phys Rev D 84, 044057, doi: http://dx.doi.org/10.1103/PhysRevD.84.044057 Title: Cauchy-characteristic matching

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[svn:einsteintoolkit] NullDecomp/trunk/ (Rev. 22)
by rhaas＠tapir.caltech.edu 18 Jun '14

18 Jun '14

User: rhaas Date: 2014/06/18 04:00 PM Modified: /trunk/ README Log: NullDecomp: update publication information of CCE paper add published paper reference. Correct previous commit. File Changes: Directory: /trunk/ ================== File [modified]: README Delta lines: +1 -1 =================================================================== --- trunk/README 2014-06-18 20:53:57 UTC (rev 21) +++ trunk/README 2014-06-18 21:00:50 UTC (rev 22) @@ -31,7 +31,7 @@ Title: Characteristic Extraction Tool for Gravitational Waveforms Authors: M.C. Babiuc, B. Szilagyi, J. Winicour, Y. Zlochower - arXiv:1011.4223, Phys Rev D 84, 044057, + arXiv:1011.4223, Phys Rev D 84, 044057, doi: http://dx.doi.org/10.1103/PhysRevD.84.044057 Title: Cauchy-characteristic matching

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[svn:einsteintoolkit] NullConstr/trunk/ (Rev. 21)
by rhaas＠tapir.caltech.edu 18 Jun '14

18 Jun '14

User: rhaas Date: 2014/06/18 04:00 PM Modified: /trunk/ README Log: NullConstr: update publication information of CCE paper add published paper reference. Correct previous commit. File Changes: Directory: /trunk/ ================== File [modified]: README Delta lines: +1 -1 =================================================================== --- trunk/README 2014-06-18 20:53:29 UTC (rev 20) +++ trunk/README 2014-06-18 21:00:05 UTC (rev 21) @@ -35,7 +35,7 @@ Title: Characteristic Extraction Tool for Gravitational Waveforms Authors: M.C. Babiuc, B. Szilagyi, J. Winicour, Y. Zlochower - arXiv:1011.4223, Phys Rev D 84, 044057, + arXiv:1011.4223, Phys Rev D 84, 044057, doi: http://dx.doi.org/10.1103/PhysRevD.84.044057 Title: Cauchy-characteristic matching

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Commits June 2014