Commits August 2011

commits@lists.einsteintoolkit.org

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99 discussions

[svn:einsteintoolkit] www/about/developers/ (Rev. 603)
by schnetter＠cct.lsu.edu 19 Aug '11

19 Aug '11

User: eschnett Date: 2011/08/19 11:49 AM Modified: /about/developers/ index.php Log: Update Erik's affiliation -This line, and those below, will be ignored-- about/developers/index.php File Changes: Directory: /about/developers/ ============================= File [modified]: index.php Delta lines: +12 -8 =================================================================== --- about/developers/index.php 2011-08-17 16:14:37 UTC (rev 602) +++ about/developers/index.php 2011-08-19 16:49:24 UTC (rev 603) @@ -72,14 +72,18 @@ </tr> <tr valign="top"> <td><img width="150" src="erik.jpg" /></td> - <td><b><a href="http:/www.cct.lsu.edu/~eschnett/" class="nostyle">Erik - Schnetter</a></b> is a assistant research professor at the Center - for Computation & Technology and the Department of Physics - & Astronomy at Louisiana State University. Erik's scientific - interests lie in high performance computing and relativistic - astrophysics. Erik is the lead architect for - the <a href="http://cactuscode.org/" class="nostyle">Cactus Framework</a> and the - originator the <a href="http://carpetcode.org/" class="nostyle">Carpet + <td><b><a href="http:/www.cct.lsu.edu/~eschnett/" + class="nostyle">Erik Schnetter</a></b> is Research Technologies + Group Lead at the + <a href="http://www.perimeterinstitute.ca/">Perimeter Institute + for Theoretical Physics</a> in Canada and also assistant research + professor at the <a href="http://www.cct.lsu.edu/">Center for + Computation & Technology</a> at Louisiana State University. + Erik's scientific interests lie in high performance computing and + relativistic astrophysics. Erik is the lead architect for + the <a href="http://cactuscode.org/" class="nostyle">Cactus + Framework</a> and the originator + the <a href="http://carpetcode.org/" class="nostyle">Carpet infrastructure</a>.</td> </tr>

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[svn:einsteintoolkit] ADMBase/trunk/ (Rev. 62)
by ian.hinder＠aei.mpg.de 17 Aug '11

17 Aug '11

User: hinder Date: 2011/08/17 05:07 PM Modified: /trunk/ interface.ccl /trunk/src/ InitSymBound.c Log: Apply "flat" boundary condition instead of "none" to ADMBase variables In the development version of Carpet, only the interior of the newly created grid is initialized by interpolation, so non-trivial boundary conditions need to be applied. File Changes: Directory: /trunk/src/ ====================== File [modified]: InitSymBound.c Delta lines: +26 -8 =================================================================== --- trunk/src/InitSymBound.c 2011-04-21 04:46:24 UTC (rev 61) +++ trunk/src/InitSymBound.c 2011-08-17 22:07:20 UTC (rev 62) @@ -123,35 +123,53 @@ } /* A macro for selecting boundary conditions and checking for errors */ -#define ADMBASE_BC(NAME) \ - {if (Boundary_SelectGroupForBC(cctkGH, CCTK_ALL_FACES, 1, -1, NAME, "none") < 0) \ +#define ADMBASE_BC(NAME, STENCIL) \ + {if (Boundary_SelectGroupForBC(cctkGH, CCTK_ALL_FACES, STENCIL, -1, NAME, "flat") < 0) \ CCTK_WARN(0, "Failed to register BC for "NAME"!");} /* Select boundary conditions on ADMBase variables */ void ADMBase_Boundaries(CCTK_ARGUMENTS) { DECLARE_CCTK_ARGUMENTS; DECLARE_CCTK_PARAMETERS; + + CCTK_INT width[6]; + CCTK_INT ierr; + CCTK_INT is_internal[6]; + CCTK_INT is_staggered[6]; + CCTK_INT shiftout[6]; + CCTK_INT stencil = 0, i; + + ierr = GetBoundarySpecification + (6, width, is_internal, is_staggered, shiftout); + if (ierr < 0) + { + CCTK_WARN (0, "Could not get the boundary specification"); + } + for (i = 0; i < 6; i++) + { + stencil = stencil > width[i] ? stencil : width[i]; + } if (CCTK_EQUALS(evolution_method, "none" ) || CCTK_EQUALS(evolution_method, "static")) { - ADMBASE_BC("ADMBase::metric"); - ADMBASE_BC("ADMBase::curv"); + ADMBASE_BC("ADMBase::metric", stencil); + ADMBASE_BC("ADMBase::curv", stencil); } if (CCTK_EQUALS(lapse_evolution_method, "static")) - ADMBASE_BC("ADMBase::lapse"); + ADMBASE_BC("ADMBase::lapse", stencil); if (!CCTK_EQUALS(initial_dtlapse, "none") && CCTK_EQUALS(dtlapse_evolution_method, "static")) - ADMBASE_BC("ADMBase::dtlapse"); + ADMBASE_BC("ADMBase::dtlapse", stencil); if (!CCTK_EQUALS(initial_shift, "none") && CCTK_EQUALS(shift_evolution_method, "static")) - ADMBASE_BC("ADMBase::shift"); + ADMBASE_BC("ADMBase::shift", stencil); if (!CCTK_EQUALS(initial_dtshift, "none") && CCTK_EQUALS(dtshift_evolution_method, "static")) - ADMBASE_BC("ADMBase::dtshift"); + ADMBASE_BC("ADMBase::dtshift", stencil); } #undef ADMBase_BC Directory: /trunk/ ================== File [modified]: interface.ccl Delta lines: +8 -0 =================================================================== --- trunk/interface.ccl 2011-04-21 04:46:24 UTC (rev 61) +++ trunk/interface.ccl 2011-08-17 22:07:20 UTC (rev 62) @@ -5,6 +5,14 @@ inherits: grid USES INCLUDE HEADER: Symmetry.h +CCTK_INT FUNCTION GetBoundarySpecification \ + (CCTK_INT IN size, \ + CCTK_INT OUT ARRAY nboundaryzones, \ + CCTK_INT OUT ARRAY is_internal, \ + CCTK_INT OUT ARRAY is_staggered, \ + CCTK_INT OUT ARRAY shiftout) +REQUIRES FUNCTION GetBoundarySpecification + public: INT shift_state TYPE = SCALAR "state of storage for shift"

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 105)
by schnetter＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: eschnett Date: 2011/08/17 01:55 PM Modified: /trunk/ einsteintoolkit.th Log: Add thorn CactusTest/TestPar File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.th Delta lines: +1 -0 =================================================================== --- trunk/einsteintoolkit.th 2011-08-17 15:32:46 UTC (rev 104) +++ trunk/einsteintoolkit.th 2011-08-17 18:55:46 UTC (rev 105) @@ -122,6 +122,7 @@ CactusTest/TestInclude2 CactusTest/TestLocalReduce CactusTest/TestLoop +CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule CactusTest/TestStrings

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[svn:einsteintoolkit] www/documentation/licenses/ (Rev. 602)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 11:14 AM Modified: /documentation/licenses/ parse_citations.pl Log: collapse table File Changes: Directory: /documentation/licenses/ =================================== File [modified]: parse_citations.pl Delta lines: +27 -2 =================================================================== --- documentation/licenses/parse_citations.pl 2011-08-17 15:39:37 UTC (rev 601) +++ documentation/licenses/parse_citations.pl 2011-08-17 16:14:37 UTC (rev 602) @@ -32,12 +32,37 @@ } # sort @arr_of_arr = sort {my (@aa,@bb); @aa = keys(%$a); @bb = keys(%$b); $aa[0] cmp $bb[0]} @arr_of_arr; + # collapse + my @arr2_of_arr = (); + my $last_key = ""; + foreach my $elem (@arr_of_arr) { + my %mapp = %$elem; + my $key = (keys(%mapp))[0]; + if ($last_key ne $key) { + my @refs = ($mapp{$key}); + my %nelem = ($key => \@refs); + push(@arr2_of_arr, \%nelem); + } else { + push(@{$arr2_of_arr[scalar(@arr2_of_arr)-1]{$key}}, $mapp{$key}); + } + $last_key = $key; + } + # output print "<table>\n"; - foreach my $elem (@arr_of_arr) { + foreach my $elem (@arr2_of_arr) { my %mapp = %$elem; my $key = (keys(%mapp))[0]; - print "<tr><th align='left'>".$key."</th><td>".$mapp{$key}."</td></tr>\n"; + my $count = scalar(@{$mapp{$key}}); + my $first = 1; + for my $ref (@{$mapp{$key}}) { + if ($first) { + print "<tr><th align='left' rowspan='$count'>".$key."</th><td>$ref</td></tr>\n"; + } else { + print "<tr><td>$ref</td></tr>\n"; + } + $first = 0; + } } print "</table>\n"; }

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[svn:einsteintoolkit] www/documentation/licenses/ (Rev. 601)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 10:39 AM Modified: /documentation/licenses/ parse_citations.pl Log: don't reenter deliniter File Changes: Directory: /documentation/licenses/ =================================== File [modified]: parse_citations.pl Delta lines: +1 -1 =================================================================== --- documentation/licenses/parse_citations.pl 2011-08-17 15:34:54 UTC (rev 600) +++ documentation/licenses/parse_citations.pl 2011-08-17 15:39:37 UTC (rev 601) @@ -27,7 +27,7 @@ my $html_part = $html_arr[$i]; $html_part =~ s/<\/?li>//g; $html_part =~ s/<\/ul>//g; - my %elem = ($key_part2=>$delimiter.$html_part); + my %elem = ($key_part2=>$html_part); push(@arr_of_arr, \%elem); } # sort

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[svn:einsteintoolkit] www/documentation/licenses/ (Rev. 600)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 10:34 AM Modified: /documentation/licenses/ parse_citations.pl Log: enable section again File Changes: Directory: /documentation/licenses/ =================================== File [modified]: parse_citations.pl Delta lines: +2 -2 =================================================================== --- documentation/licenses/parse_citations.pl 2011-08-17 15:34:02 UTC (rev 599) +++ documentation/licenses/parse_citations.pl 2011-08-17 15:34:54 UTC (rev 600) @@ -42,7 +42,7 @@ print "</table>\n"; } -#print "<h3>Requested</h3>\n"; -#&one_filter("requested-for"); +print "<h3>Requested</h3>\n"; +&one_filter("requested-for"); print "<h3>Suggested</h3>\n"; &one_filter("suggested-for");

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[svn:einsteintoolkit] www/documentation/licenses/ (Rev. 599)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 10:34 AM Modified: /documentation/licenses/ parse_citations.pl Log: don't use Authors as delimiter because some entries don't have authors (like websites), use <li> instead File Changes: Directory: /documentation/licenses/ =================================== File [modified]: parse_citations.pl Delta lines: +3 -3 =================================================================== --- documentation/licenses/parse_citations.pl 2011-08-17 14:39:22 UTC (rev 598) +++ documentation/licenses/parse_citations.pl 2011-08-17 15:34:02 UTC (rev 599) @@ -17,7 +17,7 @@ $html=~s/.*().*/$1/s; # merge key and bibtex lists - my $delimiter = "<!-- Authors"; + my $delimiter = "<li>"; my @html_arr = split($delimiter, $html); shift(@html_arr); my @keys_arr = split("\n", $keys); my @arr_of_arr = (); @@ -42,7 +42,7 @@ print "</table>\n"; } -print "<h3>Requested</h3>\n"; -&one_filter("requested-for"); +#print "<h3>Requested</h3>\n"; +#&one_filter("requested-for"); print "<h3>Suggested</h3>\n"; &one_filter("suggested-for");

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[svn:einsteintoolkit] tools/trunk/bibtex/bib2xhtml-2.31/ (Rev. 23)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 10:33 AM Modified: /trunk/bibtex/bib2xhtml-2.31/ bib2xhtml Log: look for bst files File Changes: Directory: /trunk/bibtex/bib2xhtml-2.31/ ======================================== File [modified]: bib2xhtml Delta lines: +4 -1 =================================================================== --- trunk/bibtex/bib2xhtml-2.31/bib2xhtml 2011-08-17 14:59:09 UTC (rev 22) +++ trunk/bibtex/bib2xhtml-2.31/bib2xhtml 2011-08-17 15:33:12 UTC (rev 23) @@ -47,7 +47,10 @@ @tmpfiles = (); -$ENV{'BSTINPUTS'} = '/var/www/einstein/live/bibtex/bib2xhtml-2.31'; +if (-d "/var/www/einstein/live/bibtex/bib2xhtml-2.31") { + $ENV{'BSTINPUTS'} = '/var/www/einstein/live/bibtex/bib2xhtml-2.31'; } +if (-d "/home/knarf/codes/svn.einsteintoolkit.org/www/bibtex") { + $ENV{'BSTINPUTS'} = '/home/knarf/codes/svn.einsteintoolkit.org/www/bibtex/bib2xhtml-2.31'; } sub usage { $program = $0;

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 104)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 10:32 AM Modified: /trunk/ einsteintoolkit.bib Log: use 'title' for websites, not 'note', which might be ignored by some styles File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +9 -9 =================================================================== --- trunk/einsteintoolkit.bib 2011-08-17 15:01:06 UTC (rev 103) +++ trunk/einsteintoolkit.bib 2011-08-17 15:32:46 UTC (rev 104) @@ -21,7 +21,7 @@ correctly, and with ":web" appended, as e.g. in: # Misc{EinsteinToolkit:web, -# note = {{Einstein Toolkit}: Open software for relativistic +# title = {{Einstein Toolkit}: Open software for relativistic # astrophysics}, # url = {http://einsteintoolkit.org/}, # } @@ -407,13 +407,13 @@ @Misc{Cactuscode:web, suggested-for ={Cactus/Cactus}, - note = {{Cactus} Computational Toolkit}, + title = {{Cactus} Computational Toolkit}, url = {http://www.cactuscode.org/}, } @Misc{CarpetCode:web, suggested-for ={Carpet/Carpet}, - note = {{Carpet}: Adaptive Mesh Refinement for the {Cactus} + title = {{Carpet}: Adaptive Mesh Refinement for the {Cactus} Framework}, url = {http://www.carpetcode.org/}, } @@ -555,7 +555,7 @@ ##E ############################################################################ @Misc{EinsteinToolkit:web, - note = {{Einstein Toolkit}: Open software for relativistic + title = {{Einstein Toolkit}: Open software for relativistic astrophysics}, url = {http://einsteintoolkit.org/}, } @@ -606,7 +606,7 @@ } @Misc{GSL:web, - note = {{GSL}: The {GNU} Scientific Library}, + title = {{GSL}: The {GNU} Scientific Library}, url = {http://www.gnu.org/software/gsl/}, } @@ -844,14 +844,14 @@ @Misc{KrancCode.org:web, suggested-for ="McLachlan/ML_BSSN", - note = {{Kranc}: {Kranc} Assembles Numerical Code}, + title = {{Kranc}: {Kranc} Assembles Numerical Code}, url = {http://kranccode.org/}, } ##L ############################################################################ @Misc{Lorene:web, - note = {{LORENE}: Langage Objet pour la RElativite NumeriquE}, + title = {{LORENE}: Langage Objet pour la RElativite NumeriquE}, url = {http://www.lorene.obspm.fr/}, } @@ -908,7 +908,7 @@ @Misc{McLachlan:web, suggested-for ="McLachlan/ML_BSSN", - note = {{McLachlan}, a Public {BSSN} Code}, + title = {{McLachlan}, a Public {BSSN} Code}, url = {http://www.cct.lsu.edu/~eschnett/McLachlan/}, } @@ -1052,7 +1052,7 @@ } @Misc{SimFactory:web, - note = {{SimFactory}: Herding Numerical Simulations}, + title = {{SimFactory}: Herding Numerical Simulations}, url = {http://simfactory.org/}, }

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 103)
by knarf＠cct.lsu.edu 17 Aug '11

17 Aug '11

User: knarf Date: 2011/08/17 10:01 AM Modified: /trunk/ einsteintoolkit.bib Log: fix small error File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +1 -2 =================================================================== --- trunk/einsteintoolkit.bib 2011-08-17 14:58:44 UTC (rev 102) +++ trunk/einsteintoolkit.bib 2011-08-17 15:01:06 UTC (rev 103) @@ -205,10 +205,9 @@ volume = 653, year = 2006, pages = {L93-L96}, - eprint = astro-ph/0603204, + eprint = {astro-ph/0603204}, archivePrefix ={arXiv}, doi = {10.1086/510448}, - SLACcitation = "%%CITATION = ASTRO-PH/0603204;%%" } @Article{Baker:2006yw,

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Commits August 2011