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[Carpet] branch, ET_2013_05, created. carpet-6-init-230-gd2265e8
by Carpet git repositories 10 May '13

10 May '13

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>". The branch, ET_2013_05 has been created at d2265e829d3e1f3f9ab19bd5b805b82c7f79942f (commit) - Log ----------------------------------------------------------------- commit d2265e829d3e1f3f9ab19bd5b805b82c7f79942f Merge: 8b5e709 8c63348 Author: Peter Diener <diener(a)cct.lsu.edu> Date: Mon Apr 29 14:25:24 2013 -0500 Merge branch 'master' of carpetgit@carpetcode.org:carpet commit 8b5e709c59ac6435721849d0f05a41f2505ce2b0 Author: Peter Diener <diener(a)cct.lsu.edu> Date: Mon Apr 29 14:23:06 2013 -0500 Fix in order to compile with IBM compilers. Without this fix, the IBM compilers would not compile the prolongation operators. Signed-off-by: Peter Diener <diener(a)cct.lsu.edu> commit 8c63348a8570b61f802fd366812c74b6d5a6153e Author: Roland Haas <rhaas(a)tapir.caltech.edu> Date: Sat Apr 27 15:52:13 2013 -0700 Requirements: add missing include file commit 9b4e5841e2f30bded4cfed65e37c0ff2393250e8 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Apr 27 00:16:44 2013 -0400 CarpetLib: Correct alignment mechanism when allocating memory Handle the case where new returns memory with an alignment less than the type's size. commit fa53c27c1de5d1afd5bc9d904e8a1858b06bebc4 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 25 14:12:14 2013 -0400 CarpetReduce: Offset reduction weights when periodic boundaries are used Offset reduction weights by 1/2 grid point when periodic boundaries are used with vertex centering. This means that all interior points have then weight 1, and all boundary points have then weight 0. commit c35f19d61efd8d93b4d58882cf1ad7c8481c2f3a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 10 12:12:25 2013 -0400 CarpetLib: Vectors is currently required, not optional Vectors is supposed to be an optional dependency, but building currently fails without this thorn. commit 2432ebfa38bc1cb69e3ed08f134fa38c757ca43e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 23:42:26 2013 -0400 Requirements: Whitespace change commit 40ac0f91b0fbe6d13281e4dba16c6065c531f9cd Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 23:41:31 2013 -0400 Carpet: Take tapering into account during postrestrict commit 0d879f0e85d99a1970bf3fd5468bffd4c3359770 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 23:39:57 2013 -0400 Carpet: Small performance improvement in SyncGroupsByDir commit 11006f04201a24c8324b9dc83a820f49f68218e6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 16:16:51 2013 -0400 Carpet: Exit restriction early if no groups should be restricted commit 7548d1e894f42140c05713d6e18854a5b1dabfdb Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 15:30:44 2013 -0400 CarpetLib: Remove unused/unfinished bboxtree class commit 21a97f9756161e7aa2407c810fd77e46fec2fc1e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 15:29:14 2013 -0400 Requirements: Use location_t to output warnings and errors Add function_data to location_t. Update location_t's output routine. Pass iteration number to Requirements::Recompose. Update callers in Carpet. commit 3a31ba2df380c593282b2442ad2f5513eaa1f843 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 14:32:53 2013 -0400 Requirements: Change location output order; output map before timelevel commit 390abfb6b3a7b7bdde2bb7a671580403279ca6d2 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 14:31:08 2013 -0400 Requirements: Output iteration number in warnings and error messages commit 7b51f697d3a18ce75c8e00ee275a1f43e8a8b785 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 14:29:56 2013 -0400 Requirements: Change location output format Treat iteration number as part of "location". commit fa4a45f97db33dff241b1d04cfc33d21ccf4f024 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 14:28:42 2013 -0400 Requirements: Unify order of #include statements commit 58453a5c4fa2b3e9b010407cb99fcc729bbbe22e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 14:26:00 2013 -0400 Requirements: Don't use identifiers starting with an underscore commit 3f183ce4a972d3ae34da4e830299af9a67a9ef3e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:19:13 2013 -0400 Carpet: Don't call Requirements when only asking about allocated storage When CCTK_GroupStorage{De,In}crease is called to only inquire about storage (and not modify it), don't call the Requirements thorn. commit 7332bf6500d66a183beddd8078c864cc39bdafd0 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:16:31 2013 -0400 Requirements: Correct handling of timelevels in BeforeRoutine and AfterRoutine commit a3e4d48ffc8ac3b3137f3ddfa476c01d529f2804 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:15:44 2013 -0400 Requirements: Remove some duplicate code commit ef9e9276df5c348f0c3d382cebd080cd1d78c92e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:14:53 2013 -0400 Carpet: Do not restrict variables marked as "don't restrict" Do not restrict variables marked as op_none or op_sync. Mark grid arrays as op_sync, not op_copy, which would still prolongate and restrict them. commit 7a99eee603df1194809db30f916d3eeb730c39ee Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:12:39 2013 -0400 Requirements: Modify iteration arguments in Requirements.hh Use int instead of CCTK_INT; all other arguments are also int. Change argument order in Sync; move iteration next to reflevel. Add iteration argument to BeforeRoutine; AfterRoutine also takes it. Change name from cctk_iteration to iteration; no other variables have a cctk_ prefix. Update callers in Carpet. commit 4f356038627da039d88820cfa145356ba6880faa Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:06:30 2013 -0400 Requirements: Re-order if statement (no change in meaning) commit 14c419829da917c36bfaf90cdc1dcc6ea883047e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:05:42 2013 -0400 Requirements: Warn about Requirements.hh being publicly visible commit f203c7178b5d44f4654991d5ccd2fcd8c1ce5af3 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:05:04 2013 -0400 Requirements: Simplify logic to detect changes in gridpoint_t Introduce operator^ (exclusive-or) for gridpoint_t. Use it when determining whether the state changed. commit 314d48a230714aca56fc9f27e7d6e7ca160cfb00 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 12:03:18 2013 -0400 Requirements: Rename parameter print_changes to output_changes commit 3e0ee4bb017223c9b7ac4cbe6eca3c5540d6af56 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Apr 4 10:25:30 2013 -0400 Requirements: Add Frank's html generator script commit efc23da5a857515207ba2801a31ddb429528ded1 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 13:22:28 2013 +0200 Requirements: Remove unneeded #includes commit d0c08dc7742694401608db289fc1b58eda949141 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 13:17:12 2013 +0200 Requirements: Pass all_clauses as a reference argument rather than using a global variable commit 9f99dd825fb5dd69331a5a69b1d9161c565c5354 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 13:10:11 2013 +0200 Requirements: Move flag variables into gridpoint class commit bb6832fb2ed0698286aa79f513480dfd7dd37d3b Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 13:02:36 2013 +0200 Requirements: Move all_state class to separate files commit a2a996243971db0c9eb4b10f93a00c8bb16c2b5c Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 12:43:14 2013 +0200 Requirements: Move gridpoint class to a separate file commit e713314ded779a9716f474ae0d0cd5aff66e6ea4 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 12:13:15 2013 +0200 Revert part of "Requirements: Beautify code" This reverts part of commit 40f113decf0d0de18aeabb8cce90bdc835f56fdd which looks like it was committed accidentally and causes tests to fail. commit 77c63671c5e3b2d51c9ff22891dc1e64ffd9452f Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Thu Apr 4 11:38:08 2013 +0200 Requirements: Move location class to a separate file commit 95558fa30a530d677723f63ee813f1d1fc029161 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Thu Apr 4 00:17:44 2013 -0500 Requirements: fix a couple of bugs in the debug output commit eb2a2b0afa35b1105385c726964ed6c49cffe7b7 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 23:24:02 2013 -0500 swap upper/lower case for location output commit 9759126fcac1e9615c941944b2f1cb52f1789e85 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 22:04:36 2013 -0500 Requirements: pass iteration down and print in debug output; also print when something changes (readable string) commit d41c0c9cc79dbddf6442e344615e2c36b127d99b Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 20:51:29 2013 -0500 use parameter to enable output if state of variable changes commit db7f3dfbb3ae99586deead6375f7345e1ad6912d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 17:52:03 2013 -0400 Requirements: Some source code cleanup Replace .at by .AT commit 8962dacf32642a82eee8f61d07f4122cc1ddbbb1 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 17:51:26 2013 -0400 Carpet, Requirements: Pass timelevel_offset Introduce global variable timelevel_offset in Carpet. Pass timelevel_offset from Carpet to Requirements. Use timelevel_offset when determining which timelevels are accessed. commit e99efd951ab3138230abd50966bf28b764b03c22 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 16:02:05 2013 -0500 Make set_* functions be void again, add location_t struct (unused so far) commit 89410978baf8f7f0f2011cc404741743b051b1d1 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 15:45:22 2013 -0500 Let set_ accessors return whether something was changed commit 86079b6bc84fbd50791ba4a4e80f5871bb543511 Merge: fa459d5 f6e6d82 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 15:35:26 2013 -0500 Merge branch 'master' of carpetcode.org:carpet commit fa459d512e8e454f5fb69062f53cb6b0963b5959 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 15:35:19 2013 -0500 make bool members of gridpoint_t class private, provide accessors and use them commit f6e6d8280a92f51b2d1046c067e244a88570f86f Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 16:22:40 2013 -0400 Requirements: Minor code re-shuffling and cleanup commit 00eb90b88cd3c82b73dd3ece87a311293952f7a7 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 16:13:22 2013 -0400 Requirements: Break lines to make code more readable commit 9b4b33cbdea90f72588d05d68f552fd925daa2fb Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 15:17:02 2013 -0500 make gridpoint_t a class commit 3bb8a648cb9d2bd7eb553044d4434a7dec2de086 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Wed Apr 3 22:06:21 2013 +0200 Requirements: Move all_clauses class to a separate file commit a52dee1fa739bb171144bec328e9db19093b8d00 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 15:41:09 2013 -0400 Requirements: Add todo-note to invalidate non-written regions in partial projections In projections (i.e. functions that read and write the same timelevel of the same variable), we should invalidate those regions that are read but are not written (if any). commit 79e4253a27fd1016a2644b42d1db4b7c5f40690a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 15:39:24 2013 -0400 Requirements: Remove duplication from info messages commit bf1230ee8fbc568e0e7682d6f61d9d6de89dd141 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 15:37:20 2013 -0400 Requirements: Remove dependency on defs.hh commit 40f113decf0d0de18aeabb8cce90bdc835f56fdd Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 15:35:40 2013 -0400 Requirements: Beautify code commit 27715e024145ff1a792eb1e190e1bceb04fccd57 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Wed Apr 3 21:39:33 2013 +0200 Requirements: Move clauses class and some utility functions to separate files commit 091608eace4f7ba1cf6840752e4266d1fcbe47f4 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Wed Apr 3 20:26:58 2013 +0200 Requirements: Move clause class into separate files commit 0502d5c641c4a1f1685ea8fc2625ff4a5f9e78f7 Author: Ian Hinder <ian.hinder(a)aei.mpg.de> Date: Wed Apr 3 20:11:02 2013 +0200 Requirements: Add comments commit ed2389b7e0aa21c2946dab0949e6d0960273c500 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Wed Apr 3 12:12:18 2013 -0500 output more verbose info (variable index and nr of timelevels commit 7fbf726821bd9e2d73b612fbddc4bb4e372db578 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 12:18:05 2013 -0400 Carpet: Call Requirements before, not after the respective actions Ensure requirements are met before restricting and syncing, not afterwards. commit cad9235c93ae7a4dcb3f7213529c4a36f1c435ee Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 11:57:27 2013 -0400 Requirements: White space cleanup commit 1dfd8f1babbba2929820a66ddda73cdbd7e603c2 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Apr 3 11:33:21 2013 -0400 Requirements: Use vector instead of set to store ignored variables Use vector instead of set to store ignored variables. Move some code. commit 671c86c079faa37386f59eb3c814dc837c4df4c5 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Apr 2 18:29:33 2013 -0400 Replace abs() by fabs() Replace calls to abs() with floating arguments by calls to fabs(), to ensure the results are not accidentally truncated to integer. commit c0c03fece68597fddfef57948334c5c99154f244 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Apr 2 17:40:41 2013 -0400 Requirements: New thorn Move requirement handling code out of Carpet and into a new thorn. commit afd93dce86328a3489608b729894bb34add6cb90 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Mar 25 16:53:48 2013 -0400 CarpetIO*: Output complex numbers as pair of real numbers Don't use the (real,imag) notation that C++ would use by default. commit b2e07dd1f4a8a7ee0f82fc0453548cb6fa3eb1ac Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Mar 19 15:36:36 2013 -0400 LoopControl: Improve OpenMP parallelisation of get_num_fine_threads commit 10cb957bb41e588c9f0407ab0c99fd2c43706bbe Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Mar 19 15:34:08 2013 -0400 LoopControl: Simplify #if sequence commit 10d085aa3043a139cc56fb0538bfe4e4741becd9 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Mar 18 16:25:22 2013 -0400 CarpetReduce: New parameter min_max_time_interpolation New parameter min_max_time_interpolation to disable time interpolation for min and max reductions. commit afc9bb25ad65041be3705053da280be415f5ca9d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Mar 18 15:16:56 2013 -0400 CarpetReduce: Don't require a valid cctkGH unless really needed commit 94d5fe01dc06a12b974095056d74bfc0053b4d51 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 12:26:52 2013 -0400 Carpet: Correct output of load balancing statistics Now counting owned (i.e evolved) points instead of active points. commit 7c69433983a3e3f10bc39d921809a4df0bd92026 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 12:23:59 2013 -0400 Carpet: Use C++ style cast to avoid compiler warning commit ab1794880cd5ec5a38ec0c1087bf0f3945c27615 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 10:01:17 2013 -0400 Carpet: Output all clocks in the timer tree Output all clocks, not just the wall time, when outputting the timer tree. commit 3fa30e248e3cd8e9bb2fc7aee4b07040be7b6df1 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 10:00:03 2013 -0400 LoopControl: Output statistics into per-process files, not into a single file commit dd002d5066c6e4ef3c14d0a0793bd58c95366d43 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 09:58:30 2013 -0400 CycleClock: Add parameter to disable registering a Cactus clock commit e5643ac74ec9c32b4003f8c4fb90c8b44c527995 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 09:57:09 2013 -0400 Carpet: Output timer tree at shutdown commit b4c64637c5373aaf7cec12a3ecd43e480a1aa318 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Mar 14 09:55:36 2013 -0400 Carpet: Add CactusTimer functions to get all clock values of a timer commit 14093d59320939dbf81bfa0e331a9be8e3a40d54 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Mar 12 23:45:25 2013 -0400 CarpetIntegrateTest: Modernize test parameter file commit 193728bab0133b92ad23007a86b2823c9a8f2ad2 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Mar 11 23:57:40 2013 -0400 CarpetProlongateTest: Increase test case tolerances for higher order prolongation commit 235533f662769910df4d6cc32605cc317a3306a1 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Mar 8 15:33:39 2013 -0500 Replace Cactus complex number type with C/C++ complex numbers Map CCTK_COMPLEX to "double complex" in C, and "complex<double>" in C++. (It is already mapped to "double complex" in Fortran.) Update type definitions. Re-implement Cactus complex number math functions by calling the respective C functions. Update thorn that access real and imaginary parts of complex numbers to use standard-conforming methods instead. commit 45077d797fb6e86e2b172156c899ee3be6f97424 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Mar 3 20:52:17 2013 -0500 CarpetIntegrateTest: Use ReflectionSymmetry for bitant mode commit cbb04d13f1e3cca8cf3ea6c4efba783e8303c717 Author: Roland Haas <rhaas(a)tapir.caltech.edu> Date: Thu Feb 28 09:38:16 2013 -0800 CarpetIOHDF5: remove index files along with checkpoint files commit 970bde512ad7ee3f40da408702026e4c2bc07c3e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Feb 27 12:25:46 2013 -0500 CarpetIOASCII: Use CCTK_BUILTIN_UNREACHABLE commit e79c4e4952f6daf41340ba6b581ff7ad947a5087 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Feb 26 14:40:31 2013 -0500 Carpet: New aliased function GetRegriddingEpochs commit d8d16c1e2536394054e15690c042eb728f640071 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Feb 18 19:46:01 2013 -0500 CarpetLib: Set interpolate_from_buffer_zones to "no" by default commit 9b0294c709eaeb505834bc7ea2121abfdfb0e735 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Feb 18 19:08:14 2013 -0500 CarpetLib: Correct implementation of "don't interpolate from buffer zones" commit b76cef142fbb3f2a284b14404064cde1d2eddba5 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Feb 18 19:07:54 2013 -0500 CarpetLib: Store level-wide set of buffer zones commit 4f9723f59f3aa7f0016f49091726c2e8c31409e2 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Feb 12 16:47:53 2013 -0500 Revert "CarpetLib: Change default to interpolate_from_buffer_zones=no" This reverts commit c290150324c2dd50e98cd6e35bbcd733e6f3b5a4. commit cd8d4f668ba9fad10e04bf6daa0c4e546a5b1780 Author: Roland Haas <rhaas(a)tapir.caltech.edu> Date: Mon Feb 11 20:32:54 2013 -0800 CarpetEvolutionMask: limit buffer_mask test to one process commit 4e166b68d40ec9ced2acdbebaccace667f6f6eeb Author: Roland Haas <roland.haas(a)physics.gatech.edu> Date: Fri Nov 9 09:39:42 2012 -0800 CarpetEvolutionMask: compute a mask indicating where buffers are this is s first implementatoion of this functionality. Eventually I want to extend it to label buffer points by the last MoL substep at which the grid point needs to have a RHS computed. Zero will mean "all the time" large numbers will mean "never". commit cb1399a1072460b74e75b7d5c54389fbd7dffbb6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Feb 9 11:09:48 2013 -0500 CarpetReduce: Improve code layout commit 9337f7fb9840b44bdbcda401f50f06b1ec3a68dc Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Feb 9 11:09:31 2013 -0500 LoopControl: Correct parallelisation errors (mark variables volatile) commit b4277735d56ae023bd52bc19214d5a6280ce932f Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Feb 9 11:09:05 2013 -0500 LoopControl: Share cache lines for SMT threads commit 5c504a42ef7218c2a075d4e44bc09435139ef02e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Feb 8 12:20:31 2013 -0500 LoopControl: Output statistics to a file instead of stdout commit df79d5403ee5a410d0b8ee9a54b99d0434029c9a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Feb 8 12:12:11 2013 -0500 CarpetProlongateTest: Correct default parameter values for interpolator test commit 9f8ea6b95856882d782bcc126114584d33df4197 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Feb 7 10:05:27 2013 -0500 LoopControl: Improve OpenMP parallelisation commit 0b19fe1cf8736820852fd1bdd439cac0f5c8c96b Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Feb 7 09:59:00 2013 -0500 LoopControl: Simplify STL data type usage Use string instead of const char*, use vector instead of list. commit 17a700cdb8d4ee0fa187e455cac7cb37389b95d5 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Feb 7 09:57:48 2013 -0500 LoopControl: Remove trivial vector lengths for j and k direction commit 40ce23776a26f11650b5562080789de04f0c5685 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Feb 7 09:56:09 2013 -0500 CarpetLib: Do not memoize OpenMP thread id commit 39e022a028b734de20e45fa52256e081c44f28b3 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Feb 7 09:55:22 2013 -0500 Carpet: Beautify screen output commit c290150324c2dd50e98cd6e35bbcd733e6f3b5a4 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Feb 7 09:54:58 2013 -0500 CarpetLib: Change default to interpolate_from_buffer_zones=no commit 35ab8f2e490478fb8a3c79861c06841e0d273fca Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 25 15:59:42 2013 -0500 LoopControl: Remove restrict qualifiers from shared data structures commit efb2159426c07efb0e457a27eaf70b6bebbe6a20 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 25 10:09:15 2013 -0500 LoopControl: Reduce number of arguments passed to selftest routine commit 55f4ce83ad9d774ace73941d167c4efda1bf0ebb Merge: be0c452 0d0fb2b Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Thu Feb 7 08:54:45 2013 -0600 Merge branch 'master' of carpetcode.org:carpet commit be0c452f2d840b16e7a4a0fb76479b713a82b604 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Thu Feb 7 08:47:48 2013 -0600 CarpetRegrid2: Testsuite for trivial domains in z direction commit 0e092fd149050a4eaf807aacfae6553e15a27cf8 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Thu Feb 7 08:43:27 2013 -0600 CarpetRegrid2: Allow pseudo-2D domains Currently CarpetRegrid2 contains two asserts that fail for domains that are effectively 2D (but defines as 3D arrays, e.g. (nx,ny,1). This patch makes sure these domains don't trigger the assert by checking for ilower==iupper. commit 0d0fb2bf45da70140d161190e74d0c7603480b24 Author: Roland Haas <roland.haas(a)physics.gatech.edu> Date: Mon Dec 17 13:43:02 2012 -0800 CarpetProlongateTest: restrict tests to 2 processes, reduce regions, remove sums, add 0d errornorm ouput instead required since the tests produce >0D Carpet output which is process number dependend. Regions sizes generated by CarpetRegrid2 changed since data was generated, most likely due to 549447bb134500f38da40957c4c52753a1459532 "CarpetRegrid2: Enforce certain grid hierarchy properties" which unfortunately no longer compiles with the current flesh. commit 023f22093fde49211829752f37b751fd4b31cc6f Author: Roland Haas <roland.haas(a)physics.gatech.edu> Date: Wed Jan 2 15:04:33 2013 -0800 CarpetLib: clear boundary slice offsets in dh::regrid() this avoids assert() failures when regrid is called on a level that did not change it seems. commit a857c18c883613c79f33028ef7ba6636785ebdd6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 25 10:06:49 2013 -0500 CarpetRegrid2: Correct another error in handling min_fraction commit ccd9a0e8a74c9dd6f91da5ea351d8d720835868c Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 25 10:03:39 2013 -0500 CarpetRegrid2: Output all verbose messages with veryverbose as well commit 47f7c747a2d459e0d8436ff69f763f207d1f9725 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Jan 24 15:13:10 2013 -0500 LoopControl: Avoid compiler warnings commit c3a5b638e91feddd8224b0121c0898d66b1bb650 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Jan 24 15:12:45 2013 -0500 LoopControl: Add debug assert statements when array padding is enabled commit d7067de9071d69d21ede4a5da8e3c5664af3b73d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Jan 24 15:12:06 2013 -0500 LoopControl: Correct Fortran OpenMP definitions Also clean up code. commit 87463f6c4d30ce3664c6d45fca1b73ce67a7bc4b Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Jan 24 15:11:28 2013 -0500 CarpetRegrid2: Correct min_fraction A condition was reversed, inverting the meaning of min_fraction, possibly leading to quite inefficient grid structures. commit 3146701470fbcc40afb7495065fd371bf3eec05d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Jan 24 15:10:35 2013 -0500 CarpetLib: Implement and correct head, tail, init, last in the vect class commit bcf3bb045b9b26b4daacf39584e6fc25c03da3ad Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Jan 22 14:41:18 2013 -0500 CarpetLib, LoopControl: Correct required/optional capabilities commit 954c610f54667697a8a821370d09db04f54548ef Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Jan 21 22:39:38 2013 -0500 LoopControl: Rename macro arguments to help avoid name clashes commit 06905493ce7c96779ee67811a067075b4fd64d66 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Jan 21 13:14:06 2013 -0500 TestLoopControl: Correct errors in testing ghost zones commit 54b56972cf4c7080c2d6f34d992e6dc097a2d861 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Jan 21 11:06:58 2013 -0500 LoopControl: More self-checking commit cba9a87d349c6f1c78ff26dc11730584734930cf Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Jan 21 11:06:40 2013 -0500 LoopControl: Correct Fortran macros; provide Fortran wrappers commit 74b1afeaf084016e59c847867424ae38248941ce Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Jan 21 11:05:32 2013 -0500 TestLoopControl: Use module loopcontrol commit 8c3e6378ed7611f479813ef9c780d2b2811a284b Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 17:38:06 2013 -0500 TestLoopControl: New thorn commit 7e08602bb50cfd2ce0396fedc119544211e29aca Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 17:15:32 2013 -0500 LoopControl: Update Fortran macros to follow cctk_Loop API commit 3826479b859280f52e0122908ec0429574b26789 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 17:15:00 2013 -0500 LoopControl: Add assert statements to loop macros to catch indexing errors commit 3192a5cc2740e8d801a72d6efd1103c8cca5a1d4 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 17:14:25 2013 -0500 CarpetLib: Rename argument to vect::index from lsh to ash commit da0df590c04ede3b6e8e43ecee1b2526cc40a1db Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 17:13:58 2013 -0500 Carpet: Use cctk_ash where necessary in poisoning and checksumming commit 2acad47b1161286012b852a0b83f880c1fb5efb8 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 17:13:24 2013 -0500 Carpet: Return cctk_ash instead of cctk_lsh in CCTK_ArrayGroupSizeB commit a39aff1ecb730b7e0d92788c7e208a008a7e659b Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 12:55:22 2013 -0500 CarpetIOASCII: Update test results after domain decomposition change commit be371182348018905b897b47f3720940d426d516 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Jan 20 11:00:23 2013 -0500 LoopControl: Correct indexing error with vectorisation commit 16d80f8fc9ed668c9f734946b03c53ae3b432c2a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Jan 19 21:36:21 2013 -0500 LoopControl: Store loop bounds in the provided variables Store the loop bounds in the provided variables, not in lc_imin and lc_imax. commit 1258f552730890f0a06030ce037d763e7368a469 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Jan 19 21:35:28 2013 -0500 Carpet: Correct load-balancing algorithm to really prefer splitting in the z direction commit 63308ace65a81b3501019a5d67ef7414485f5af2 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Jan 19 20:43:57 2013 -0500 CarpetIOBasic: Simplify code and avoid compiler warnings (again) commit 871a76ffd865ede1d7e21d5a9d3ba9abac1b2aa5 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Jan 19 13:24:12 2013 -0500 CarpetLib: Disable DGFE operators if building without DGFE to avoid compiler warnings commit 07f4d7cfc35892e8128a4d5f7db697d875ab730c Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 17:50:23 2013 -0500 CarpetLib: Use C++ wrapper madd instead of mul and add commit 321818fb9dcefcb8775906e8af1b50aa52736277 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 17:30:26 2013 -0500 CarpetLib: Explicitly convert values to signed commit 3b1469f445fb5bf9e6f94f12cc0981f591e4aab0 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 17:01:41 2013 -0500 CarpetIOHDF5: Make variable unsigned to avoid compiler warning commit de0152cb621a8ff7db715959f61ba5c380fa46b7 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 16:59:55 2013 -0500 CarpetIOHDF5: Remove unused variables, initialise other variable to avoid compiler warnings commit ba060ea8eec2ed9d10c34c466966bd6ddfa285e9 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 16:57:31 2013 -0500 CarpetIOBasic: Simplify code and avoid compiler warnings commit 75711e77d8904412294c7054673e4036546d43b7 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 15:20:07 2013 -0500 CarpetLib: Remove unused variables commit 5ae7e0fdfcfe89715715ab1a521b11aadf35b7a1 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Jan 18 11:40:49 2013 -0500 LoopControl: Run tests only with 2 processes commit 67d96e1995944039dc83fe8a4fcb8c2d67e81a90 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Jan 17 14:47:57 2013 -0500 LoopControl: Circumvent Cray compiler bug commit e0ddb73239c73c6de42a01204194173ce65ebff4 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 14:46:17 2013 -0500 LoopControl: Rewrite Rewrite code in C++. Remove dependency on GSL. Modify algorithm; now traverses arrays bottom-up (by splitting the looping region into equal-sized blocks) instead of top-down (splitting the region into a certain number of blocks) Make multi-threading dynamic Support SMT (hyper-threading), i.e. threads which share the same cache commit 1cddd960d62da42ccd111022f1326740f688b48d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 14:43:47 2013 -0500 CarpetLib: Rewrite array padding Obtain cache information from thorn hwloc. Align allocated memory manually if operator new returns unaligned memory. commit f07af2a351c2096f84487b13c114a1925755eafb Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 14:42:12 2013 -0500 CycleClock: Handle Cray compiler commit 0441c40fe9ad49d9e25d360b0da7f69d26ca82e6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 14:41:41 2013 -0500 CarpetReduce: Clean up code defining reduction weight masks commit ba9d75ac3f15bf6285f763be96531dc807ca7a0a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 14:41:12 2013 -0500 CarpetReduce: Support array padding (cctk_ash) commit dd18eedb4478f0abdbe26d2cf8a3eaf21a38cb5e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 14:40:00 2013 -0500 Carpet: Initialise all timing variables commit 70ef3c946c0f51cb7ac74b693ed1fe8311a05641 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Jan 16 10:44:35 2013 -0500 CarpetReduce: Remove empty file commit 4f55206495c57018813d0896fc39c7aadd42723d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Jan 15 19:41:09 2013 -0500 Carpet: Remove backup files commit 6d17a56743ace71ef86bd0fdd6fce506046b265a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:36:25 2012 -0500 CycleClock: Undo debugging change commit 21fad153f922a757707104fafeb91cdb9d847619 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:36:04 2012 -0500 CycleClock: Abort compile if architecture is not supported commit 79db9ee2af670c5fe440349ea7c21a26888686fb Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:35:29 2012 -0500 CycleClock: Support Blue Gene/Q commit 98385497f0d6fd8593cfc5e9ea54e18d1be5973c Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:35:17 2012 -0500 CycleClock: Optimise x86-64 PGI implementation commit 0d23d45a8ae39b8dd73b0aa98e5a346a853c1bf6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:34:45 2012 -0500 CycleClock: Determine elapsed time via integer arithmetic Determine elapsed time via integer arithmetic, which may be more accurate that double precision arithmetic. commit b3c2c87d8a63ae64239952fadc68e333812c8f05 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:33:52 2012 -0500 CycleClock: Reduce wait time for determining cycle tick commit 60c59fafbc23afa4ef175f624f0c310050271650 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Mon Dec 31 09:33:22 2012 -0500 CarpetLib: Ensure allocated memory is aligned for vectorisation commit cdd5d0db583dbf1713822c06e8bd64b114b4564d Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Dec 26 12:09:50 2012 -0500 Carpet: Use dup2 instead of dup do control destination file descriptor commit a60b2971fc200c8f30e43579beb3770ff30af422 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Dec 21 19:19:38 2012 -0500 CarpetLib, CycleClock: Move cycle counting clock into its own thorn New thorn CycleClock, mostly taken out of CarpetLib. This thorn provides an (almost) cycle-accurate clock, taken from FFTW. This clock is both directly accessible, and is also wrapped in a Cactus clock. Note: Applying this commit will require adding thorn CycleClock to thorn lists and parameter files. commit 2c6ced8b7e84af5509e58d09865a88b52385321e Author: David Radice <david.radice(a)aei.mpg.de> Date: Wed Dec 19 07:50:38 2012 -0800 CarpetIOHDF5: Sliced HDF5 output index file not stored correctly Index HDF5 datafiles weree not handled correctly in the case of sliced data. The files are created and initialized correctly at the first iteration, but every subsequent access fails with an HDF5 error. Patch by David Radice. commit ec4f13f3b3c9b3f21a05151f2df13b9fb4fb782b Author: Roland Haas <roland.haas(a)physics.gatech.edu> Date: Wed Dec 12 18:11:56 2012 -0800 CarpetLib: support padding in non-OpenMP transport operator commit 8d948b752cf61bbbf46e254a9fea6721a99771d6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Tue Dec 11 14:15:48 2012 -0500 CarpetLib: Check HRSCC_GLL_ELEMENT_HH instead of HRSCC_HH Check HRSCC_GLL_ELEMENT_HH instead of HRSCC_HH to see whether DGFE is supported. commit 532e87358ffc615711bb1a16fe2e75743594db78 Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Thu Nov 29 09:44:56 2012 -0600 CarpetIOHDF5: comment unused variable (commented because code using it is also commented commit b95ccdcf5b321023880e182f3d646a6119ae3e1f Author: Frank Löffler <knarf(a)cct.lsu.edu> Date: Thu Nov 29 09:43:13 2012 -0600 CarpetIOHDF5: cast string constant to char array to get rid of compiler warning commit 2358073604a80bf41c42624ce2272314221ac947 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 25 11:19:10 2012 -0500 CarpetRegrid2: More verbose info output during regridding commit eacf0e1822fdeaf6ab1fa9101d08e301cae4674f Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 25 11:18:45 2012 -0500 CarpetRegrid2: Correct output of refinement level during AMR commit cec0300747391fadd836334d6f8c81ff83821ce8 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 25 11:18:13 2012 -0500 Carpet: Check return value of dup() commit db3bdfe06cd913749368c71fba8dff7d5cca357a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 25 11:17:57 2012 -0500 Carpet: Avoid unused and uninitialised variables commit 4236197781bcfa9214d7f81596dbae20b19cafc7 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 25 11:17:31 2012 -0500 Carpet: Initialise TimerNode fields in correct order commit c4ca3950eea5b679e8fda9a8c643601b2299c95e Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Nov 24 22:50:40 2012 -0500 CarpetLib: Correct process number in bbox output commit 2373cc7d1e4cbaf774d4707cb620f2132884fab6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Nov 24 22:49:57 2012 -0500 CarpetLib: Add default case to switch statement commit e2f7c1260739962af1a9097b88eceff28616ff25 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Nov 24 22:49:28 2012 -0500 CarpetLib: Use "process" instead of "processor" in comments and output commit 9c1df541e4cc8097c2131181dab46da41259264f Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Nov 24 22:47:17 2012 -0500 Carpet: Re-apply init_fill_timelevels after postregridinitial commit 6b5c318bb1057851d0ee1b5bba6e633c5cf31ca6 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Nov 21 16:29:18 2012 -0500 CarpetLib: Support padding in enovol prolongation operator commit 4b29366c791d5fad2e10a1da1f1c20ecd91515a8 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Nov 21 12:09:54 2012 -0500 Carpet: Turn time level / prolongation operator warning into an info message This warning has many false positives, and is informational only. commit 722ed3ff29b6bf58649c56fac25ac11e8aecb6fd Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Nov 21 12:08:51 2012 -0500 Carpet: Simplify code commit ec25e62821c80cfcdfeb5c6331899df8e655b34c Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 18 17:43:00 2012 -0500 CarpetIOF5: Various improvements commit 338b03b9e9254785aad9e506c66efdd6867cc188 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sun Nov 18 17:41:45 2012 -0500 CarpetLib: Make th::time_interpolation_during_regridding public commit 22f99d40d514e1b223b034cb9dfb928984451632 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Nov 17 20:37:15 2012 -0500 CarpetLib: Set up all timers on all processes all the time Set up timers even on processes that won't use them, so that reducing timers across processes works. commit bf5e78ebd64631f6f92d2c239c5ae234cac8b49a Author: Erik Schnetter <schnetter(a)gmail.com> Date: Sat Nov 17 20:36:27 2012 -0500 CarpetLib: Re-enable OpenMP collapse clauses commit 53a1c146bc09c67ea709c14dab4c73ebebed86dc Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Nov 16 18:55:47 2012 -0500 Allow padding in transport operators Rewrite padding infrastructure. Add padded array extents to transport operator APIs. commit df843816d07d18e2c0407915d1b8113bfe7ab720 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Fri Nov 16 18:50:30 2012 -0500 CarpetIONirvana: Require MPI commit 0daa31b71f78a8c07f7ef2401b2b4cf041be6c63 Author: Erik Schnetter <schnetter(a)gmail.com> Date: Thu Nov 22 08:40:47 2012 -0500 LoopControl: Add missing copyprivate commit 6fd24e995050a7ef9c167bdf8f34e8a1366dfd37 Author: Roland Haas <roland.haas(a)physics.gatech.edu> Date: Mon Sep 24 16:38:47 2012 -0700 CarpetLib: add volume averaged cc eno operator commit 4306806ad6d517f4e9b675d3cd541c95db3ea7fa Author: Erik Schnetter <schnetter(a)gmail.com> Date: Wed Nov 14 16:39:38 2012 -0500 CarpetLib: Define dh members tallying the size of refinement boundaries Define dh members tallying the size of refinement boundaries. This may be used to implement (2d) face grid functions at some point. ----------------------------------------------------------------------- hooks/post-receive -- Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>

1 0

[svn:einsteintoolkit] manifest/branches/ET_2013_05/ (Rev. 237)
by knarf＠cct.lsu.edu 10 May '13

10 May '13

User: knarf Date: 2013/05/10 09:29 AM Modified: /branches/ET_2013_05/ einsteintoolkit.th Log: new thornlist (doesn't work yet, as branches don't exist yet) File Changes: Directory: /branches/ET_2013_05/ ================================ File [modified]: einsteintoolkit.th Delta lines: +25 -18 =================================================================== --- branches/ET_2013_05/einsteintoolkit.th 2013-05-10 14:26:04 UTC (rev 236) +++ branches/ET_2013_05/einsteintoolkit.th 2013-05-10 14:29:37 UTC (rev 237) @@ -9,6 +9,7 @@ !DEFINE ARR = $ROOT/arrangements !DEFINE COMPONENTLIST_TARGET = $ROOT/thornlists/ +!DEFINE ET_RELEASE = ET_2013_05 # A note on OpenCL: @@ -42,37 +43,37 @@ # This thorn list !TARGET = $ROOT !TYPE = svn -!AUTH_URL = https://svn.einsteintoolkit.org/$1/trunk -!URL = http://svn.einsteintoolkit.org/$1/trunk +!AUTH_URL = https://svn.einsteintoolkit.org/$1/branches/$ET_RELEASE +!URL = http://svn.einsteintoolkit.org/$1/branches/$ET_RELEASE !CHECKOUT = manifest # Cactus Flesh !TARGET = $ROOT !TYPE = svn -!AUTH_URL = https://svn.cactuscode.org/flesh/trunk -!URL = http://svn.cactuscode.org/flesh/trunk +!AUTH_URL = https://svn.cactuscode.org/flesh/branches/$ET_RELEASE +!URL = http://svn.cactuscode.org/flesh/branches/$ET_RELEASE !CHECKOUT = Cactus !NAME = . # Simulation Factory !TARGET = $ROOT !TYPE = svn -!URL = https://svn.cct.lsu.edu/repos/numrel/$1/trunk +!URL = https://svn.cct.lsu.edu/repos/numrel/$1/branches/$ET_RELEASE !CHECKOUT = simfactory2 !NAME = simfactory # Example parameter files !TARGET = $ROOT !TYPE = svn -!AUTH_URL = https://svn.einsteintoolkit.org/cactus/EinsteinExamples/trunk/$1 -!URL = http://svn.einsteintoolkit.org/cactus/EinsteinExamples/trunk/$1 +!AUTH_URL = https://svn.einsteintoolkit.org/cactus/EinsteinExamples/branches/$ET_RELEAS… +!URL = http://svn.einsteintoolkit.org/cactus/EinsteinExamples/branches/$ET_RELEASE… !CHECKOUT = par # Various Cactus utilities !TARGET = $ROOT !TYPE = svn -!AUTH_URL = https://svn.cactuscode.org/Utilities/trunk -!URL = http://svn.cactuscode.org/Utilities/trunk +!AUTH_URL = https://svn.cactuscode.org/Utilities/branches/$ET_RELEASE +!URL = http://svn.cactuscode.org/Utilities/branches/$ET_RELEASE !CHECKOUT = . !NAME = utils @@ -81,6 +82,7 @@ !TYPE = git !URL = git://github.com/gridaphobe/CRL.git !AUTH_URL = git@github.com:gridaphobe/CRL.git +!REPO_BRANCH = $ET_RELEASE !CHECKOUT = GetComponents @@ -88,8 +90,8 @@ # Cactus thorns !TARGET = $ARR !TYPE = svn -!AUTH_URL = https://svn.cactuscode.org/arrangements/$1/$2/trunk -!URL = http://svn.cactuscode.org/arrangements/$1/$2/trunk +!AUTH_URL = https://svn.cactuscode.org/arrangements/$1/$2/branches/$ET_RELEASE +!URL = http://svn.cactuscode.org/arrangements/$1/$2/branches/$ET_RELEASE !CHECKOUT = CactusArchive/ADM @@ -192,8 +194,8 @@ # The Einstein Toolkit !TARGET = $ARR !TYPE = svn -!AUTH_URL = https://svn.einsteintoolkit.org/cactus/$1/$2/trunk -!URL = http://svn.einsteintoolkit.org/cactus/$1/$2/trunk +!AUTH_URL = https://svn.einsteintoolkit.org/cactus/$1/$2/branches/$ET_RELEASE +!URL = http://svn.einsteintoolkit.org/cactus/$1/$2/branches/$ET_RELEASE !CHECKOUT = EinsteinAnalysis/ADMAnalysis EinsteinAnalysis/ADMConstraints @@ -269,6 +271,7 @@ !AUTH_URL = git@github.com:rhaas80/Outflow.git !URL = git://github.com/rhaas80/Outflow.git !REPO_PATH= ../$2 +!REPO_BRANCH = $ET_RELEASE !CHECKOUT = EinsteinAnalysis/Outflow @@ -277,6 +280,7 @@ !AUTH_URL = git@github.com:barrywardell/EinsteinExact !URL = git://github.com/barrywardell/EinsteinExact !REPO_PATH= $2 +!REPO_BRANCH = $ET_RELEASE !CHECKOUT = EinsteinExact/doc EinsteinExact/m EinsteinExact/tests EinsteinExact/EinsteinExact_Test EinsteinExact/GaugeWave @@ -290,8 +294,8 @@ # Additional Cactus thorns !TARGET = $ARR !TYPE = svn -!AUTH_URL = https://svn.cactuscode.org/projects/$1/$2/trunk -!URL = http://svn.cactuscode.org/projects/$1/$2/trunk +!AUTH_URL = https://svn.cactuscode.org/projects/$1/$2/branches/$ET_RELEASE +!URL = http://svn.cactuscode.org/projects/$1/$2/branches/$ET_RELEASE !CHECKOUT = ExternalLibraries/BLAS ExternalLibraries/FFTW3 @@ -315,8 +319,8 @@ # Various thorns from the AEI !TARGET = $ARR !TYPE = svn -!AUTH_URL = https://svn.aei.mpg.de/numrel/$1/$2/trunk -!URL = http://svn.aei.mpg.de/numrel/$1/$2/trunk +!AUTH_URL = https://svn.aei.mpg.de/numrel/$1/$2/branches/$ET_RELEASE +!URL = http://svn.aei.mpg.de/numrel/$1/$2/branches/$ET_RELEASE !CHECKOUT = AEIThorns/ADMMass AEIThorns/AEILocalInterp @@ -329,7 +333,7 @@ # Various thorns from LSU !TARGET = $ARR !TYPE = svn -!URL = https://svn.cct.lsu.edu/repos/numrel/$1/$2/trunk +!URL = https://svn.cct.lsu.edu/repos/numrel/$1/$2/branches/$ET_RELEASE !CHECKOUT = LSUThorns/PeriodicCarpet LSUThorns/QuasiLocalMeasures @@ -344,6 +348,7 @@ !AUTH_URL = git@github.com:ianhinder/Kranc.git !URL = git://github.com/ianhinder/Kranc.git !REPO_PATH= Auxiliary/Cactus +!REPO_BRANCH = $ET_RELEASE !CHECKOUT = KrancNumericalTools/GenericFD @@ -355,6 +360,7 @@ !AUTH_URL = carpetgit@carpetcode.org:McLachlan !URL = git://carpetcode.org/McLachlan !REPO_PATH= $2 +!REPO_BRANCH = $ET_RELEASE !CHECKOUT = McLachlan/doc McLachlan/m McLachlan/par McLachlan/ML_ADMConstraints McLachlan/ML_ADMQuantities @@ -375,6 +381,7 @@ !TYPE = git !AUTH_URL = carpetgit@carpetcode.org:carpet !URL = git://carpetcode.org/carpet +!REPO_BRANCH = $ET_RELEASE # For the (old) hg version of Carpet, comment out the previous three # lines, and uncomment the next three lines #!TYPE = hg

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[svn:einsteintoolkit] manifest/branches/ET_2013_05/ (Rev. 236)
by knarf＠cct.lsu.edu 10 May '13

10 May '13

User: knarf Date: 2013/05/10 09:26 AM Added: /branches/ET_2013_05/ Log: release branch

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[svn:einsteintoolkit] NewRad/trunk/src/ (Rev. 22)
by knarf＠cct.lsu.edu 09 May '13

09 May '13

User: knarf Date: 2013/05/09 12:52 PM Modified: /trunk/src/ newrad.cc Log: remove unused variable File Changes: Directory: /trunk/src/ ====================== File [modified]: newrad.cc Delta lines: +0 -1 =================================================================== --- trunk/src/newrad.cc 2013-05-09 17:52:07 UTC (rev 21) +++ trunk/src/newrad.cc 2013-05-09 17:52:58 UTC (rev 22) @@ -34,7 +34,6 @@ int const ai = cctkGH->cctk_ash[0]; int const aj = cctkGH->cctk_ash[1]; - int const ak = cctkGH->cctk_ash[2]; int const si = dir[0]; int const sj = dir[1];

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[svn:einsteintoolkit] NewRad/trunk/src/ (Rev. 21)
by knarf＠cct.lsu.edu 09 May '13

09 May '13

User: knarf Date: 2013/05/09 12:52 PM Modified: /trunk/src/ extrap.cc, newrad.cc Log: fix suspicious logic, see #1261 File Changes: Directory: /trunk/src/ ====================== File [modified]: extrap.cc Delta lines: +5 -12 =================================================================== --- trunk/src/extrap.cc 2013-02-19 02:40:57 UTC (rev 20) +++ trunk/src/extrap.cc 2013-05-09 17:52:07 UTC (rev 21) @@ -119,13 +119,10 @@ // one of the faces is a boundary bool have_bnd = false; - // all boundary faces are physical boundaries - bool all_physbnd = true; // at least one boundary face is a physical boundary bool any_physbnd = false; - // all boundary faces are either physical boundaries or - // ghost zones - bool all_physbnd_or_ghostbnd = true; + // all boundary faces are not inter-processor boundaries + bool all_not_ipbnd = true; int bmin[3], bmax[3]; for (int d=0; d<3; ++d) { @@ -134,10 +131,8 @@ bmin[d] = 0; bmax[d] = imin[d]; have_bnd = true; - all_physbnd = all_physbnd and is_physbnd[2*d+0]; any_physbnd = any_physbnd or is_physbnd[2*d+0]; - all_physbnd_or_ghostbnd = all_physbnd_or_ghostbnd and - (is_physbnd[2*d+0] or is_ipbnd[2*d+0]); + all_not_ipbnd = all_not_ipbnd and not is_ipbnd[2*d+0]; break; case 0: bmin[d] = imin[d]; @@ -147,16 +142,14 @@ bmin[d] = imax[d]; bmax[d] = cctkGH->cctk_lsh[d]; have_bnd = true; - all_physbnd = all_physbnd and is_physbnd[2*d+1]; any_physbnd = any_physbnd or is_physbnd[2*d+1]; - all_physbnd_or_ghostbnd = all_physbnd_or_ghostbnd and - (is_physbnd[2*d+1] or not is_ipbnd[2*d+1]); + all_not_ipbnd = all_not_ipbnd and not is_ipbnd[2*d+1]; break; } } assert (have_bnd); // must be true since nnz>0 - if (have_bnd and any_physbnd and all_physbnd_or_ghostbnd) { + if (have_bnd and any_physbnd and all_not_ipbnd) { extrap_kernel (cctkGH, bmin, bmax, dir, var); } File [modified]: newrad.cc Delta lines: +5 -12 =================================================================== --- trunk/src/newrad.cc 2013-02-19 02:40:57 UTC (rev 20) +++ trunk/src/newrad.cc 2013-05-09 17:52:07 UTC (rev 21) @@ -308,13 +308,10 @@ // one of the faces is a boundary bool have_bnd = false; - // all boundary faces are physical boundaries - bool all_physbnd = true; // at least one boundary face is a physical boundary bool any_physbnd = false; - // all boundary faces are either physical boundaries or - // ghost zones - bool all_physbnd_or_ghostbnd = true; + // all boundary faces are not inter-processor boundaries + bool all_not_ipbnd = true; int bmin[3], bmax[3]; for (int d=0; d<3; ++d) { @@ -323,10 +320,8 @@ bmin[d] = 0; bmax[d] = imin[d]; have_bnd = true; - all_physbnd = all_physbnd and is_physbnd[2*d+0]; any_physbnd = any_physbnd or is_physbnd[2*d+0]; - all_physbnd_or_ghostbnd = all_physbnd_or_ghostbnd and - (is_physbnd[2*d+0] or not is_ipbnd[2*d+0]); + all_not_ipbnd = all_not_ipbnd and not is_ipbnd[2*d+0]; break; case 0: bmin[d] = imin[d]; @@ -336,16 +331,14 @@ bmin[d] = imax[d]; bmax[d] = cctkGH->cctk_lsh[d]; have_bnd = true; - all_physbnd = all_physbnd and is_physbnd[2*d+1]; any_physbnd = any_physbnd or is_physbnd[2*d+1]; - all_physbnd_or_ghostbnd = all_physbnd_or_ghostbnd and - (is_physbnd[2*d+1] or not is_ipbnd[2*d+1]); + all_not_ipbnd = all_not_ipbnd and not is_ipbnd[2*d+1]; break; } } assert (have_bnd); // must be true since nnz>0 - if (have_bnd and any_physbnd and all_physbnd_or_ghostbnd) { + if (have_bnd and any_physbnd and all_not_ipbnd) { newrad_kernel (cctkGH, bmin, bmax, dir, var, rhs, x,y,z,r, var0, v0, radpower); }

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[svn:einsteintoolkit] www/release-info/ (Rev. 1005)
by schnetter＠cct.lsu.edu 07 May '13

07 May '13

User: eschnett Date: 2013/05/07 07:01 PM Modified: /release-info/ hopper__1_6.log, hopper__2_6.log Log: Update Hopper test results File Changes: Directory: /release-info/ ========================= File [modified]: hopper__1_6.log Delta lines: <Unavailable> File [modified]: hopper__2_6.log Delta lines: <Unavailable>

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[svn:einsteintoolkit] www/publications/2013_MHD/ (Rev. 1004)
by rhaas＠tapir.caltech.edu 07 May '13

07 May '13

User: rhaas Date: 2013/05/07 03:40 PM Modified: /publications/2013_MHD/ einsteintoolkit_plus_zelmani.th Log: update einsteintoolkit_plus_zelmani.th to trunk version File Changes: Directory: /publications/2013_MHD/ ================================== File [modified]: einsteintoolkit_plus_zelmani.th Delta lines: +27 -14 =================================================================== --- publications/2013_MHD/einsteintoolkit_plus_zelmani.th 2013-05-07 20:35:09 UTC (rev 1003) +++ publications/2013_MHD/einsteintoolkit_plus_zelmani.th 2013-05-07 20:40:14 UTC (rev 1004) @@ -1,11 +1,10 @@ -# This file was automatically generated using the GetComponents script. +# Component list for the Einstein Toolkit <http://einsteintoolkit.org/> +# $Revision: 216 $ +# $Date: 2013-03-27 10:28:28 -0700 (Wed, 27 Mar 2013) $ +# $HeadURL: https://svn.einsteintoolkit.org/manifest/trunk/einsteintoolkit.th $ !CRL_VERSION = 1.0 - -# Component list: thornlists/einsteintoolkit.th - - !DEFINE ROOT = Cactus !DEFINE ARR = $ROOT/arrangements !DEFINE COMPONENTLIST_TARGET = $ROOT/thornlists/ @@ -109,6 +108,8 @@ CactusConnect/HTTPDExtra CactusConnect/Socket +CactusDoc/CoreDoc + CactusElliptic/EllBase #CactusElliptic/EllPETSc CactusElliptic/EllSOR @@ -146,6 +147,7 @@ CactusTest/TestArrays CactusTest/TestComplex CactusTest/TestCoordinates +CactusTest/TestFortranCrayPointers CactusTest/TestFortranDependencies1 CactusTest/TestFortranDependencies2 CactusTest/TestFpointerNULL @@ -155,6 +157,7 @@ CactusTest/TestInclude2 CactusTest/TestLocalReduce CactusTest/TestLoop +CactusTest/TestMath CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule @@ -263,6 +266,14 @@ !TARGET = $ARR !TYPE = git +!AUTH_URL = git@github.com:rhaas80/Outflow.git +!URL = git://github.com/rhaas80/Outflow.git +!REPO_PATH= ../$2 +!CHECKOUT = +EinsteinAnalysis/Outflow + +!TARGET = $ARR +!TYPE = git !AUTH_URL = git@github.com:barrywardell/EinsteinExact !URL = git://github.com/barrywardell/EinsteinExact !REPO_PATH= $2 @@ -320,6 +331,7 @@ !TYPE = svn !URL = https://svn.cct.lsu.edu/repos/numrel/$1/$2/trunk !CHECKOUT = +LSUThorns/PeriodicCarpet LSUThorns/QuasiLocalMeasures LSUThorns/SummationByParts LSUThorns/Vectors @@ -354,19 +366,20 @@ McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy #McLachlan/ML_WaveToy_CL +McLachlan/ML_WaveToy_Test # Carpet, the AMR driver !TARGET = $ARR -!TYPE = hg -!AUTH_URL = ssh://carpetmercurial@carpetcode.org/carpet -!URL = http://www.carpetcode.org/hg/carpet -# For the git version of Carpet, comment the previous three lines and uncomment -# the next three -#!TYPE = git -#!AUTH_URL = carpetgit@carpetcode.org:carpet -#!URL = git://carpetcode.org/carpet +!TYPE = git +!AUTH_URL = carpetgit@carpetcode.org:carpet +!URL = git://carpetcode.org/carpet +# For the (old) hg version of Carpet, comment out the previous three +# lines, and uncomment the next three lines +#!TYPE = hg +#!AUTH_URL = ssh://carpetgit@carpetcode.org +#!URL = http://www.carpetcode.org/carpet !CHECKOUT = Carpet/doc Carpet/Carpet Carpet/CarpetEvolutionMask @@ -383,8 +396,8 @@ Carpet/CarpetRegrid2 Carpet/CarpetSlab Carpet/CarpetTracker +Carpet/CycleClock Carpet/LoopControl -Carpet/CycleClock

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[svn:einsteintoolkit] www/publications/ (Rev. 1003)
by rhaas＠tapir.caltech.edu 07 May '13

07 May '13

User: rhaas Date: 2013/05/07 03:35 PM Modified: /publications/ index.php /publications/2013_MHD/ index.php Log: update arXiv identifier for MHD paper on webpage File Changes: Directory: /publications/2013_MHD/ ================================== File [modified]: index.php Delta lines: +7 -2 =================================================================== --- publications/2013_MHD/index.php 2013-05-07 14:49:29 UTC (rev 1002) +++ publications/2013_MHD/index.php 2013-05-07 20:35:09 UTC (rev 1003) @@ -46,7 +46,7 @@ <ul> <li>doi: <a href=""></a></li> -<li>arXiv: <a href=""></a></li> +<li>arXiv: <a href="http://arxiv.org/abs/1304.5544">1304.5544 [gr-qc]</a></li> </ul> <h3>Materials</h3> @@ -166,9 +166,14 @@ <a href="par/collapse/A3_oct_80.par">A3_oct_80.par</a> </td></tr> <tr><th>thornlist</th><td><a href="einsteintoolkit_plus_zelmani.th">Einstein Toolkit 2013_05 release + selected Zelmani</a></td></tr> + <tr><th>Initial data checkpoints </th><td> + <a href="ID/collapse/ID_A3_oct.tar.gz">ID_A3_oct.tar.gz</a> + <a href="ID/collapse/ID_A3_oct_64.tar.gz">ID_A3_oct_64.tar.gz</a> + <a href="ID/collapse/ID_A3_oct_80.tar.gz">ID_A3_oct_80.tar.gz</a> + </td></tr> <tr><th>CPU time </th><td>x SU</td></tr> <tr><th>memory </th><td>x GB</td></tr> - <tr><th>Notes </th><td>...</td></tr> + <tr><th>Notes </th><td>ID generated via RNSID.</td></tr> </table> <?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> Directory: /publications/ ========================= File [modified]: index.php Delta lines: +3 -3 =================================================================== --- publications/index.php 2013-05-07 14:49:29 UTC (rev 1002) +++ publications/index.php 2013-05-07 20:35:09 UTC (rev 1003) @@ -19,14 +19,14 @@ (<a href="http://arxiv.org/abs/1111.3344">arXiv:1111.3344 [gr-qc]</a>). <a href="2011_ET/">Materials</a>. </li> -<li><a name="Moesta:2013aa">Philipp</a> Mösta, Bruno C. Mundim, +<li><a name="Moesta:2013dna">Philipp</a> Mösta, Bruno C. Mundim, Joshua A. Faber, Roland Haas1, Scott C. Noble, Tanja Bode, Frank Löffler, Christian D. Ott, Christian Reisswig, Erik Schnetter. - <a href="http://arXiv.org/abs/9999.9999">GRHydro: + <a href="http://arXiv.org/abs/1304.5544">GRHydro: A new open source general-relativistic magnetohydrodynamics code for the Einstein Toolkit</a>. - <a href="http://arxiv.org/abs/9999.9999">arXiv:9999.9999 [gr-qc]</a>. + <a href="http://arxiv.org/abs/1304.5544">arXiv:1304.5544 [gr-qc]</a>. <a href="2013_MHD/">Materials</a>. </li>

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[svn:einsteintoolkit] manifest/trunk/ (Rev. 235)
by knarf＠cct.lsu.edu 07 May '13

07 May '13

User: knarf Date: 2013/05/07 09:52 AM Modified: /trunk/ einsteintoolkit.bib Log: suggest Moesta:2013dna for GRHydro File Changes: Directory: /trunk/ ================== File [modified]: einsteintoolkit.bib Delta lines: +1 -0 =================================================================== --- trunk/einsteintoolkit.bib 2013-05-07 14:39:03 UTC (rev 234) +++ trunk/einsteintoolkit.bib 2013-05-07 14:52:38 UTC (rev 235) @@ -2409,6 +2409,7 @@ } @article{Moesta:2013dna, + suggested-for ="EinsteinEvolve/GRHydro", author = "Moesta, Philipp and Mundim, Bruno C. and Faber, Joshua A. and Haas, Roland and Noble, Scott C. and Bode, Tanja and L{\"o}ffler, Frank and Ott, Christian D. and Reisswig, Christian

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[svn:einsteintoolkit] www/documentation/licenses/ (Rev. 1002)
by knarf＠cct.lsu.edu 07 May '13

07 May '13

User: knarf Date: 2013/05/07 09:49 AM Modified: /documentation/licenses/ parse_citations.pl Log: add bibtex key File Changes: Directory: /documentation/licenses/ =================================== File [modified]: parse_citations.pl Delta lines: +6 -2 =================================================================== --- documentation/licenses/parse_citations.pl 2013-05-07 14:42:01 UTC (rev 1001) +++ documentation/licenses/parse_citations.pl 2013-05-07 14:49:29 UTC (rev 1002) @@ -56,10 +56,14 @@ my $count = scalar(@{$mapp{$key}}); my $first = 1; for my $ref (@{$mapp{$key}}) { + my $bibname = " "; + if ($ref =~ /a name="([^"]+)"/) { + $bibname = $1; + } if ($first) { - print "<tr><th align='left' rowspan='$count'>".$key."</th><td>$ref</td></tr>\n"; + print "<tr><th align='left' rowspan='$count'>".$key."</th><td>$ref</td><td>$bibname</td></tr>\n"; } else { - print "<tr><td>$ref</td></tr>\n"; + print "<tr><td>$ref</td><td>$bibname</td></tr>\n"; } $first = 0; }

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