Commits April 2011

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12 participants
208 discussions

[svn:einsteintoolkit] www/release-info/ (Rev. 561)
by roland.haas＠physics.gatech.edu 20 Apr '11

20 Apr '11

User: rhaas Date: 2011/04/20 08:43 AM Modified: /release-info/ minkowski-gcc45__1_1.log, minkowski-gcc45__2_1.log, minkowski-gcc45__2_2.log Log: update minkowski results File Changes: Directory: /release-info/ ========================= File [modified]: minkowski-gcc45__1_1.log Delta lines: +9 -11 =================================================================== --- release-info/minkowski-gcc45__1_1.log 2011-04-19 18:43:15 UTC (rev 560) +++ release-info/minkowski-gcc45__1_1.log 2011-04-20 13:43:08 UTC (rev 561) @@ -852,7 +852,7 @@ Hydro_InitExcision: diag_pugh_tvd Success: 72 files compared, 60 differ in the last digits Hydro_InitExcision: halfsphere_pugh_ppm - Failure: 75 files compared, 57 differ, 2 differ significantly + Success: 75 files compared, 57 differ in the last digits Hydro_InitExcision: halfsphere_pugh_tvd Success: 75 files compared, 50 differ in the last digits Hydro_InitExcision: sphere_pugh_ppm @@ -862,13 +862,13 @@ Hydro_InitExcision: x_flip_pugh_eno Success: 72 files compared, 26 differ in the last digits Hydro_InitExcision: x_flip_pugh_ppm - Failure: 72 files compared, 27 differ, 1 differ significantly + Success: 72 files compared, 27 differ in the last digits Hydro_InitExcision: x_flip_pugh_tvd Success: 72 files compared, 25 differ in the last digits Hydro_InitExcision: x_pugh_eno Success: 72 files compared, 30 differ in the last digits Hydro_InitExcision: x_pugh_ppm - Failure: 72 files compared, 36 differ, 1 differ significantly + Success: 72 files compared, 36 differ in the last digits Hydro_InitExcision: x_pugh_tvd Success: 72 files compared, 27 differ in the last digits IDAnalyticBH: kerr @@ -1020,14 +1020,14 @@ WeylScal4: teukolsky Success: 8 files compared, 6 differ in the last digits WeylScal4: teukolskyID - Success: 8 files compared, 5 differ in the last digits + Failure: 8 files missing, 0 files compared, 0 differ ======================================================================== Summary for configuration sim - Time -> Wed Apr 13 16:57:13 EDT 2011 + Time -> Wed Apr 20 08:49:54 EDT 2011 Host -> phys44230.physics.gatech.edu User -> rhaas3 @@ -1036,16 +1036,14 @@ Runnable tests -> 131 Total number of thorns -> 163 Number of tested thorns -> 39 - Number of tests passed -> 128 + Number of tests passed -> 130 Number passed only to - set tolerance -> 76 - Number failed -> 3 + set tolerance -> 78 + Number failed -> 1 Tests failed: - halfsphere_pugh_ppm (from Hydro_InitExcision) - x_flip_pugh_ppm (from Hydro_InitExcision) - x_pugh_ppm (from Hydro_InitExcision) + teukolskyID (from WeylScal4) ======================================================================== File [modified]: minkowski-gcc45__2_1.log Delta lines: +7 -13 =================================================================== --- release-info/minkowski-gcc45__2_1.log 2011-04-19 18:43:15 UTC (rev 560) +++ release-info/minkowski-gcc45__2_1.log 2011-04-20 13:43:08 UTC (rev 561) @@ -849,7 +849,7 @@ Hydro_InitExcision: diag_pugh_tvd Success: 72 files compared, 60 differ in the last digits Hydro_InitExcision: halfsphere_pugh_ppm - Failure: 75 files compared, 57 differ, 2 differ significantly + Success: 75 files compared, 57 differ in the last digits Hydro_InitExcision: halfsphere_pugh_tvd Success: 75 files compared, 50 differ in the last digits Hydro_InitExcision: sphere_pugh_ppm @@ -859,13 +859,13 @@ Hydro_InitExcision: x_flip_pugh_eno Success: 72 files compared, 26 differ in the last digits Hydro_InitExcision: x_flip_pugh_ppm - Failure: 72 files compared, 27 differ, 1 differ significantly + Success: 72 files compared, 27 differ in the last digits Hydro_InitExcision: x_flip_pugh_tvd Success: 72 files compared, 25 differ in the last digits Hydro_InitExcision: x_pugh_eno Success: 72 files compared, 30 differ in the last digits Hydro_InitExcision: x_pugh_ppm - Failure: 72 files compared, 36 differ, 1 differ significantly + Success: 72 files compared, 36 differ in the last digits Hydro_InitExcision: x_pugh_tvd Success: 72 files compared, 27 differ in the last digits IDAnalyticBH: kerr @@ -1024,7 +1024,7 @@ Summary for configuration sim - Time -> Wed Apr 13 17:44:23 EDT 2011 + Time -> Wed Apr 20 09:14:36 EDT 2011 Host -> phys44230.physics.gatech.edu User -> rhaas3 @@ -1033,16 +1033,10 @@ Runnable tests -> 124 Total number of thorns -> 163 Number of tested thorns -> 38 - Number of tests passed -> 121 + Number of tests passed -> 124 Number passed only to - set tolerance -> 73 - Number failed -> 3 + set tolerance -> 76 + Number failed -> 0 - Tests failed: - - halfsphere_pugh_ppm (from Hydro_InitExcision) - x_flip_pugh_ppm (from Hydro_InitExcision) - x_pugh_ppm (from Hydro_InitExcision) - ======================================================================== File [modified]: minkowski-gcc45__2_2.log Delta lines: +7 -13 =================================================================== --- release-info/minkowski-gcc45__2_2.log 2011-04-19 18:43:15 UTC (rev 560) +++ release-info/minkowski-gcc45__2_2.log 2011-04-20 13:43:08 UTC (rev 561) @@ -849,7 +849,7 @@ Hydro_InitExcision: diag_pugh_tvd Success: 72 files compared, 60 differ in the last digits Hydro_InitExcision: halfsphere_pugh_ppm - Failure: 75 files compared, 57 differ, 2 differ significantly + Success: 75 files compared, 57 differ in the last digits Hydro_InitExcision: halfsphere_pugh_tvd Success: 75 files compared, 50 differ in the last digits Hydro_InitExcision: sphere_pugh_ppm @@ -859,13 +859,13 @@ Hydro_InitExcision: x_flip_pugh_eno Success: 72 files compared, 26 differ in the last digits Hydro_InitExcision: x_flip_pugh_ppm - Failure: 72 files compared, 27 differ, 1 differ significantly + Success: 72 files compared, 27 differ in the last digits Hydro_InitExcision: x_flip_pugh_tvd Success: 72 files compared, 25 differ in the last digits Hydro_InitExcision: x_pugh_eno Success: 72 files compared, 30 differ in the last digits Hydro_InitExcision: x_pugh_ppm - Failure: 72 files compared, 36 differ, 1 differ significantly + Success: 72 files compared, 36 differ in the last digits Hydro_InitExcision: x_pugh_tvd Success: 72 files compared, 27 differ in the last digits IDAnalyticBH: kerr @@ -1024,7 +1024,7 @@ Summary for configuration sim - Time -> Wed Apr 13 18:02:41 EDT 2011 + Time -> Wed Apr 20 09:32:32 EDT 2011 Host -> phys44230.physics.gatech.edu User -> rhaas3 @@ -1033,16 +1033,10 @@ Runnable tests -> 124 Total number of thorns -> 163 Number of tested thorns -> 38 - Number of tests passed -> 121 + Number of tests passed -> 124 Number passed only to - set tolerance -> 73 - Number failed -> 3 + set tolerance -> 76 + Number failed -> 0 - Tests failed: - - halfsphere_pugh_ppm (from Hydro_InitExcision) - x_flip_pugh_ppm (from Hydro_InitExcision) - x_pugh_ppm (from Hydro_InitExcision) - ========================================================================

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[svn:einsteintoolkit] ADMBase/trunk/ (Rev. 60)
by knarf＠cct.lsu.edu 19 Apr '11

19 Apr '11

User: knarf Date: 2011/04/19 09:08 PM Modified: /trunk/ schedule.ccl Log: Schedule ApplyBCs after variables have been selected (only applies to static evolutions, triggered a testsuite in ML_BSSN_Test File Changes: Directory: /trunk/ ================== File [modified]: schedule.ccl Delta lines: +5 -0 =================================================================== --- trunk/schedule.ccl 2011-04-14 14:46:32 UTC (rev 59) +++ trunk/schedule.ccl 2011-04-20 02:08:18 UTC (rev 60) @@ -241,6 +241,11 @@ SYNC: metric SYNC: curv } "Select ADMBase boundary conditions - may be required for mesh refinement" + + SCHEDULE GROUP ApplyBCs as ADMBase_ApplyBCs IN MoL_PostStep AFTER ADMBase_Boundaries BEFORE ADMBase_SetADMVars + { + } "Apply the boundary conditions of ADMBase" + } # TODO: Rename this group to "ADMBase_HaveBeenSet"?

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[svn:einsteintoolkit] EOS_Omni/trunk/doc/ (Rev. 46)
by schnetter＠cct.lsu.edu 19 Apr '11

19 Apr '11

User: eschnett Date: 2011/04/19 07:59 PM Modified: /trunk/doc/ documentation.tex Log: Some grammar corrections File Changes: Directory: /trunk/doc/ ====================== File [modified]: documentation.tex Delta lines: +8 -8 =================================================================== --- trunk/doc/documentation.tex 2011-04-20 00:39:48 UTC (rev 45) +++ trunk/doc/documentation.tex 2011-04-20 00:59:23 UTC (rev 46) @@ -112,11 +112,11 @@ \begin{abstract} \noindent This thorn provides a unified EOS (Equation Of State) - interface and implements multiple analytic EOS and provides table + interface and implements multiple analytic EOS, and also provides table reader and interpolation routines for finite-temperature - microphysical EOS available from {\tt - http://www.stellarcollapse.org}\@. Currently, the implemented - analytic EOS are the polytropic EOS, the gamma-law EOS, a hybrid EOS + microphysical EOS available from + \url{http://www.stellarcollapse.org}. Currently, the implemented + analytic EOS are the polytropic EOS, the gamma-law EOS, and a hybrid EOS consisting of a 2-piece piecewise-polytrope with an a thermal, gamma-law component. \end{abstract} @@ -150,7 +150,7 @@ \texttt{EOS\_Omni} works via the aliased-function interface, and EOS functions to be used must be declared in \texttt{interface.ccl}. -Here is an example call/{interface.ccl} entry: +Here is an example \texttt{interface.ccl} entry: \begin{verbatim} void FUNCTION EOS_Omni_press(CCTK_INT IN eoskey, \ CCTK_INT IN havetemp, \ @@ -176,7 +176,7 @@ \item \texttt{eoskey = 4}: Finite-temperature microphysical EOS \end{itemize} \item \texttt{havetemp} determines whether the EOS is to be called as - a function of $(\rho,\epsilon,Y_e)$ (\texttt{havetemp = 0}), as a + a function of $(\rho,\epsilon,Y_e)$ (\texttt{havetemp = 0}), or as a function of $(\rho,T,Y_e)$ (\texttt{havetemp = 1}). \texttt{havetemp = 0} is the method of choice for analytic EOS during evolution, but at the initial data stage one may need to set @@ -249,7 +249,7 @@ \end{eqnarray} (which actually ignores the temperature). -Internally, \texttt{EOS\_Omni} uses cgs units and on startup converts +Internally, \texttt{EOS\_Omni} uses cgs units, and on startup converts the EOS parameters from solar units to cgs units. This conversion depends on $\gamma$ and the value of $\gamma$ at the initial data stage (\texttt{poly\_gamma\_ini}) is used for this. @@ -310,7 +310,7 @@ component described by $\gamma_\mathrm{th}$. Polytrope 1 is soft and describes a gas of relativistic degenerate electrons with $\gamma_1 \approx 4/3$. It is used below nuclear density ($\rho_\mathrm{nuc} -\approx 2\times10^{14}\,\mathrm{g\,cm}^{-3}$) and smoothly matched to +\approx 2\times10^{14}\,\mathrm{g\,cm}^{-3}$), and is smoothly matched to polytrope 2 which applies above $\rho_\mathrm{nuc}$, is stiff, and models the repulsive core of the strong force above nuclear density ($\gamma_2 \gtrsim 2.5$). $K_2$ is completely determined by

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[svn:einsteintoolkit] EOS_Omni/trunk/doc/ (Rev. 45)
by cott＠tapir.caltech.edu 19 Apr '11

19 Apr '11

User: cott Date: 2011/04/19 07:39 PM Modified: /trunk/doc/ documentation.tex Log: * describe finite-temperature nuclear EOS File Changes: Directory: /trunk/doc/ ====================== File [modified]: documentation.tex Delta lines: +20 -3 =================================================================== --- trunk/doc/documentation.tex 2011-04-20 00:21:05 UTC (rev 44) +++ trunk/doc/documentation.tex 2011-04-20 00:39:48 UTC (rev 45) @@ -342,13 +342,30 @@ -\subsection{Finite-Temperature Nuclear} +\subsection{Finite-Temperature Nuclear EOS} -\textbf{TODO: Not yet documented; not even mentioned yet in some other - sections of this documentation.} +Complex microphysical finite-temperature equations of state come +usually in tabulated form. {\tt EOS\_Omni} comes with routines +provided as part of the \texttt{nuc\_eos} package described in +\cite{oconnor:10} and available at \\ {\tt + http://www.stellarcollapse.org}. A variety of EOS tables for +application in high-density astrophysical situations (i.e. in stellar +collapse or in compact star mergers) are also available from there +in HDF5 format. +The parameters controlling the finite-temperature nuclear EOS +are the following: +\begin{tabular}{lll} +\texttt{nuceos\_read\_table}& BOOLEAN & Set to {\tt yes} to read table.\\ +\texttt{do\_energy\_shift}& BOOLEAN & Set to {\tt yes} to subtract the energy shift\\ +&& stored in the table to get correctly normalized $\epsilon$.\\ +\texttt{nuceos\_table\_name}& STRING & Path/Name of the table file. +\end{tabular} + + + \section{Converting Old Parameter Files} If you have a parameter file that uses the previous EOS interface in

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[svn:einsteintoolkit] EOS_Omni/trunk/doc/ (Rev. 44)
by cott＠tapir.caltech.edu 19 Apr '11

19 Apr '11

User: cott Date: 2011/04/19 07:21 PM Modified: /trunk/doc/ documentation.tex Log: * add a ref File Changes: Directory: /trunk/doc/ ====================== File [modified]: documentation.tex Delta lines: +3 -0 =================================================================== --- trunk/doc/documentation.tex 2011-04-20 00:12:05 UTC (rev 43) +++ trunk/doc/documentation.tex 2011-04-20 00:21:05 UTC (rev 44) @@ -416,9 +416,12 @@ \begin{thebibliography}{9} \bibitem{janka:93} Janka, H.-T., Zwerger, T., \& Moenchmeyer, R.\ 1993, Astron. Astrophys., 268, 360 +\bibitem{oconnor:10} O'Connor, E., \& Ott, C.~D.\ 2010, Class. Quantum Grav., 27, 114103 + + \end{thebibliography} % Do not delete next line

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[svn:einsteintoolkit] EOS_Omni/trunk/doc/ (Rev. 43)
by cott＠tapir.caltech.edu 19 Apr '11

19 Apr '11

User: cott Date: 2011/04/19 07:12 PM Modified: /trunk/doc/ documentation.tex Log: * describe hybrid EOS File Changes: Directory: /trunk/doc/ ====================== File [modified]: documentation.tex Delta lines: +57 -3 =================================================================== --- trunk/doc/documentation.tex 2011-04-19 15:16:15 UTC (rev 42) +++ trunk/doc/documentation.tex 2011-04-20 00:12:05 UTC (rev 43) @@ -76,6 +76,18 @@ % homepage at www.cactuscode.org) \usepackage{../../../../doc/latex/cactus} +\newenvironment{equationarray} +{\arraycolsep 0.14 em +\begin{eqnarray}} +{\end{eqnarray}} + +\newenvironment{equationarray*} +{\arraycolsep 0.14 em +\begin{eqnarray*}} +{\end{eqnarray*}} + + + \begin{document} % The author of the documentation @@ -290,8 +302,46 @@ \subsection{Hybrid} -\textbf{TODO: Not yet documented.} +The hybrid EOS was introduced by \cite{janka:93} for use in simplified +simulations of stellar collapse to mimic (1) the stiffening of the +nuclear EOS at nuclear density and (2) to include thermal pressure in +the postbounce phase. It consists of two polytropes characterized by +($K_1$, $\gamma_1$) and ($K_2$, $\gamma_2$) and a thermal $\gamma-$law +component described by $\gamma_\mathrm{th}$. Polytrope 1 is soft and +describes a gas of relativistic degenerate electrons with $\gamma_1 +\approx 4/3$. It is used below nuclear density ($\rho_\mathrm{nuc} +\approx 2\times10^{14}\,\mathrm{g\,cm}^{-3}$) and smoothly matched to +polytrope 2 which applies above $\rho_\mathrm{nuc}$, is stiff, and +models the repulsive core of the strong force above nuclear density +($\gamma_2 \gtrsim 2.5$). $K_2$ is completely determined by +$P_1(\rho_\mathrm{nuc}) = P_2(\rho_\mathrm{nuc})$ and $K_1, \gamma_1,$ +and $\gamma_2$. The full functional form of the EOS +$P=P(\rho,\epsilon)$ with the thermal component (which takes into +account shock heating) is given by +\begin{equationarray} + P & = & \frac{\gamma - \gamma_{\rm th}}{\gamma - 1} + K \rho_{\rm nuc}^{\gamma_1 - \gamma} + \rho^{\gamma} - \frac{(\gamma_{\rm th} - 1) (\gamma - \gamma_1)} + {(\gamma_1 - 1) (\gamma_2 - 1)} + K \rho_{\rm nuc}^{\gamma_1 - 1} \rho + + (\gamma_{\rm th} - 1) \rho \epsilon\,. + \label{eq:hybrid_eos} +\end{equationarray}% +The \texttt{EOS\_Omni} parameters for the hybrid EOS are the following: + +\begin{tabular}{ll} +\texttt{hybrid\_gamma1} & $\gamma_1$, $\gamma_1 = 1.325$ is an appropriate choice.\\ +\texttt{hybrid\_gamma2} & $\gamma_2$, $\gamma_2 = 2.5$ is an appropriate choice.\\ +\texttt{hybrid\_gamma\_th} & $\gamma_\mathrm{th}$, perhaps $1.5$.\\ +\texttt{hybrid\_k1} & $K_1$, $0.4640517$ in solar units for relativistic degenerate e$^{-}$.\\ +\texttt{hybrid\_rho\_nuc} & nuclear density, standard is $3.238607\times 10^{-4}$ in solar units. +\end{tabular} + + + + + \subsection{Finite-Temperature Nuclear} \textbf{TODO: Not yet documented; not even mentioned yet in some other @@ -363,10 +413,14 @@ -%\begin{thebibliography}{9} +\begin{thebibliography}{9} +\bibitem{janka:93} Janka, H.-T., Zwerger, T., \& Moenchmeyer, R.\ 1993, Astron. Astrophys., 268, 360 -%\end{thebibliography} + + +\end{thebibliography} + % Do not delete next line % END CACTUS THORNGUIDE

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[svn:einsteintoolkit] www/release-info/ (Rev. 560)
by knarf＠cct.lsu.edu 19 Apr '11

19 Apr '11

User: knarf Date: 2011/04/19 01:43 PM Modified: /release-info/ parse_testsuite_results.cgi Log: set new date for marking old results File Changes: Directory: /release-info/ ========================= File [modified]: parse_testsuite_results.cgi Delta lines: +2 -2 =================================================================== --- release-info/parse_testsuite_results.cgi 2011-04-19 18:00:34 UTC (rev 559) +++ release-info/parse_testsuite_results.cgi 2011-04-19 18:43:15 UTC (rev 560) @@ -20,8 +20,8 @@ my $nthreads = 1; my %fileinfo = (); -#my $too_old = "Mon Mar 28 00:00:00 CDT 2011"; -my $too_old = "1 week ago"; +my $too_old = "Tue Apr 19 12:00:00 CDT 2011"; +#my $too_old = "1 week ago"; # open each log file one by one foreach my $filename (@filenames) {

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[svn:einsteintoolkit] www/release-info/ (Rev. 559)
by knarf＠cct.lsu.edu 19 Apr '11

19 Apr '11

User: knarf Date: 2011/04/19 01:00 PM Modified: /release-info/ run_tests Log: special run-command for philip File Changes: Directory: /release-info/ ========================= File [modified]: run_tests Delta lines: +2 -2 =================================================================== --- release-info/run_tests 2011-04-18 19:53:36 UTC (rev 558) +++ release-info/run_tests 2011-04-19 18:00:34 UTC (rev 559) @@ -8,8 +8,6 @@ cd ET_2011_05 export CCTK_TESTSUITE_RUN_COMMAND="mpirun -np \$nprocs \$exe \$parfile" -hostname | grep ^philip && - export CCTK_TESTSUITE_RUN_COMMAND="mpirun -machinefile $PBS_NODEFILE -np \$nprocs \$exe \$parfile" hostname | grep ^qb && export CCTK_TESTSUITE_RUN_COMMAND="/usr/local/packages/mvapich2/1.4/intel-11.1/bin/mpirun_rsh -hostfile $PBS_NODEFILE -np \$nprocs /bin/env MV2_ENABLE_AFFINITY=0 \$exe \$parfile" hostname | grep macbook-pro.local && @@ -27,6 +25,8 @@ export CCTK_TESTSUITE_RUN_PROCESSORS=2 export OMP_NUM_THREADS=2;; esac + hostname | grep ^philip && + export CCTK_TESTSUITE_RUN_COMMAND="mpirun -machinefile $PBS_NODEFILE -np \$nprocs /home/knarf/work/ET/openmp$OMP_NUM_THREADS \$parfile" # makeing sure openmp is really used through an external script hostname | grep ^numrel && export CCTK_TESTSUITE_RUN_COMMAND="~/bin/mpirun$OMP_NUM_THREADS -np \$nprocs \$exe \$parfile"

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[svn:einsteintoolkit] Hydro_InitExcision/trunk/test/ (Rev. 116)
by knarf＠cct.lsu.edu 19 Apr '11

19 Apr '11

User: knarf Date: 2011/04/19 12:22 PM Modified: /trunk/test/ test.ccl Log: raise tolerance for absolute errors. These are shock-tubes which larger absolute values of variables File Changes: Directory: /trunk/test/ ======================= File [modified]: test.ccl Delta lines: +1 -1 =================================================================== --- trunk/test/test.ccl 2011-04-18 04:49:10 UTC (rev 115) +++ trunk/test/test.ccl 2011-04-19 17:22:01 UTC (rev 116) @@ -1,2 +1,2 @@ -ABSTOL 1.e-10 +ABSTOL 3.e-10 RELTOL 1.e-10

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[svn:einsteintoolkit] EinsteinExamples/trunk/par/ (Rev. 22)
by knarf＠cct.lsu.edu 19 Apr '11

19 Apr '11

User: knarf Date: 2011/04/19 11:29 AM Modified: /trunk/par/ qc0-mclachlan.par Log: set the number of timelevels of the ADM metric to three to avoid problems with the AHFinder File Changes: Directory: /trunk/par/ ====================== File [modified]: qc0-mclachlan.par Delta lines: +3 -0 =================================================================== --- trunk/par/qc0-mclachlan.par 2010-11-21 03:27:30 UTC (rev 21) +++ trunk/par/qc0-mclachlan.par 2011-04-19 16:29:21 UTC (rev 22) @@ -259,6 +259,9 @@ ADMBase::initial_dtlapse = "zero" ADMBase::initial_dtshift = "zero" +# needed for AHFinderDirect +ADMBase::metric_timelevels = 3 + TwoPunctures::par_b = 1.168642873 TwoPunctures::par_m_plus = 0.453 TwoPunctures::par_m_minus = 0.453

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Commits April 2011