Commits November 2014

commits@lists.einsteintoolkit.org

10 participants
106 discussions

[svn:einsteintoolkit] www/documentation/ (Rev. 1457)
by rhaas＠tapir.caltech.edu 24 Nov '14

24 Nov '14

User: rhaas Date: 2014/11/24 04:43 PM Modified: /documentation/CoreDoc/ documentation.html, documentation0x.png, documentation1x.png, documentation2x.png, documentation3x.png, documentation4x.png /documentation/MaintGuide/ MaintGuide.html, MaintGuide0x.png, MaintGuidech1.html, MaintGuidech10.html, MaintGuidech11.html, MaintGuidech12.html, MaintGuidech13.html, MaintGuidech14.html, MaintGuidech15.html, MaintGuidech16.html, MaintGuidech17.html, MaintGuidech18.html, MaintGuidech19.html, MaintGuidech2.html, MaintGuidech20.html, MaintGuidech21.html, MaintGuidech22.html, MaintGuidech23.html, MaintGuidech24.html, MaintGuidech3.html, MaintGuidech4.html, MaintGuidech5.html, MaintGuidech6.html, MaintGuidech7.html, MaintGuidech8.html, MaintGuidech9.html, MaintGuidepa1.html, MaintGuidepa10.html, MaintGuidepa2.html, MaintGuidepa3.html, MaintGuidepa4.html, MaintGuidepa5.html, MaintGuidepa6.html, MaintGuidepa7.html, MaintGuidepa8.html, MaintGuidepa9.html /documentation/ReferenceManual/ 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commit/EinsteinEvolve: 3 new changesets
by Bitbucket 24 Nov '14

24 Nov '14

3 new commits in EinsteinEvolve: https://bitbucket.org/einsteintoolkit/einsteinevolve/commits/cef0ee829c32/ Changeset: cef0ee829c32 Branch: None User: knarrff Date: 2014-11-24 15:25:42+00:00 Summary: GRHydro: remove dependency on ADMMacros::spatial_order Introduce GRHydro::sources_spatial_order in favor of ADMMacros::spatial_order. Only the location (and name) of the parameter changed. Affected #: 30 files https://bitbucket.org/einsteintoolkit/einsteinevolve/commits/e5944f473d0f/ Changeset: e5944f473d0f Branch: None User: knarrff Date: 2014-11-24 15:34:18+00:00 Summary: still activate ADMMacros for some tests, as Tmunu requires it Affected #: 5 files https://bitbucket.org/einsteintoolkit/einsteinevolve/commits/786a1c2a6800/ Changeset: 786a1c2a6800 Branch: master User: knarrff Date: 2014-11-24 19:45:56+00:00 Summary: Merged in sources_spatial_order (pull request #3) GRHydro: remove dependency on ADMMacros::spatial_order Affected #: 30 files Repository URL: https://bitbucket.org/einsteintoolkit/einsteinevolve/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/EinsteinEvolve: knarrff: still activate ADMMacros for some tests, as Tmunu requires it
by Bitbucket 24 Nov '14

24 Nov '14

1 new commit in EinsteinEvolve: https://bitbucket.org/einsteintoolkit/einsteinevolve/commits/e5944f473d0f/ Changeset: e5944f473d0f Branch: sources_spatial_order User: knarrff Date: 2014-11-24 15:34:18+00:00 Summary: still activate ADMMacros for some tests, as Tmunu requires it Affected #: 5 files Repository URL: https://bitbucket.org/einsteintoolkit/einsteinevolve/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/EinsteinEvolve: knarrff: Merged newrad-requires into master
by Bitbucket 24 Nov '14

24 Nov '14

1 new commit in EinsteinEvolve: https://bitbucket.org/einsteintoolkit/einsteinevolve/commits/c4177ef9aa8b/ Changeset: c4177ef9aa8b Branch: master User: knarrff Date: 2014-11-24 15:30:19+00:00 Summary: Merged newrad-requires into master Affected #: 1 file Repository URL: https://bitbucket.org/einsteintoolkit/einsteinevolve/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/EinsteinEvolve: knarrff: GRHydro: remove dependency on ADMMacros::spatial_order
by Bitbucket 24 Nov '14

24 Nov '14

1 new commit in EinsteinEvolve: https://bitbucket.org/einsteintoolkit/einsteinevolve/commits/cef0ee829c32/ Changeset: cef0ee829c32 Branch: sources_spatial_order User: knarrff Date: 2014-11-24 15:25:42+00:00 Summary: GRHydro: remove dependency on ADMMacros::spatial_order Introduce GRHydro::sources_spatial_order in favor of ADMMacros::spatial_order. Only the location (and name) of the parameter changed. Affected #: 30 files Repository URL: https://bitbucket.org/einsteintoolkit/einsteinevolve/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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[Carpet] branch, psamr, updated. ET_2014_05_v0-40-g380aebb
by Carpet git repositories 20 Nov '14

20 Nov '14

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>". The branch, psamr has been updated via 380aebb0828d544b7e7df57cce6cbdb1f33aa023 (commit) from 307c1d5df29f8d4fd3882c5fcf03db7f01cb7d76 (commit) Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- commit 380aebb0828d544b7e7df57cce6cbdb1f33aa023 Author: Steven R. Brandt <sbrandt(a)cct.lsu.edu> Date: Thu Nov 20 17:41:10 2014 -0600 Moved directory ----------------------------------------------------------------------- Summary of changes: Carpet/{PSARM_stuff => PSAMR_stuff}/benchmarks/wavemol3rk4.par | 0 Carpet/{PSARM_stuff => PSAMR_stuff}/benchmarks/wavemol3rk4_orig.par | 0 Carpet/{PSARM_stuff => PSAMR_stuff}/condense | 0 Carpet/{PSARM_stuff => PSAMR_stuff}/psamr.th | 0 4 files changed, 0 insertions(+), 0 deletions(-) rename Carpet/{PSARM_stuff => PSAMR_stuff}/benchmarks/wavemol3rk4.par (100%) rename Carpet/{PSARM_stuff => PSAMR_stuff}/benchmarks/wavemol3rk4_orig.par (100%) rename Carpet/{PSARM_stuff => PSAMR_stuff}/condense (100%) rename Carpet/{PSARM_stuff => PSAMR_stuff}/psamr.th (100%) hooks/post-receive -- Carpet — Adaptive Mesh Refinement for the Cactus Framework <http://carpetcode.org/>

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[svn:einsteintoolkit] www/ (Rev. 1456)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 01:22 PM Modified: / index.php Log: ninth -> tenth File Changes: Directory: / ============ File [modified]: index.php Delta lines: +1 -1 =================================================================== --- index.php 2014-11-19 19:20:19 UTC (rev 1455) +++ index.php 2014-11-19 19:22:00 UTC (rev 1456) @@ -15,7 +15,7 @@ November 2014: We are pleased to <a href="about/releases/ET_2014_11_announcement.php">announce the -ninth release</a> (code name +tenth release</a> (code name "<a href="http://en.wikipedia.org/wiki/Caroline_Herschel">Herschel</a>") of the Einstein Toolkit, an open, community developed software infrastructure for relativistic astrophysics.

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[svn:einsteintoolkit] www/ (Rev. 1455)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 01:20 PM Modified: / index.php Log: put new release on front page File Changes: Directory: / ============ File [modified]: index.php Delta lines: +3 -3 =================================================================== --- index.php 2014-11-19 19:12:56 UTC (rev 1454) +++ index.php 2014-11-19 19:20:19 UTC (rev 1455) @@ -13,10 +13,10 @@ <a class = "downloadbutton" href = "download/">Download</a> -May 2014: We are pleased to -<a href="about/releases/ET_2014_05_announcement.php">announce the +November 2014: We are pleased to +<a href="about/releases/ET_2014_11_announcement.php">announce the ninth release</a> (code name -"<a href="http://en.wikipedia.org/wiki/John_Archibald_Wheeler">Wheeler</a>") +"<a href="http://en.wikipedia.org/wiki/Caroline_Herschel">Herschel</a>") of the Einstein Toolkit, an open, community developed software infrastructure for relativistic astrophysics.

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[svn:einsteintoolkit] www/about/releases/ (Rev. 1454)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 01:12 PM Added: /about/releases/ ET_2014_11_announcement.txt Modified: /about/releases/ ET_2014_11_announcement.php Log: txt announcement File Changes: Directory: /about/releases/ =========================== File [modified]: ET_2014_11_announcement.php Delta lines: +1 -0 =================================================================== --- about/releases/ET_2014_11_announcement.php 2014-11-19 18:53:36 UTC (rev 1453) +++ about/releases/ET_2014_11_announcement.php 2014-11-19 19:12:56 UTC (rev 1454) @@ -170,6 +170,7 @@ The "Herschel" Release Team on behalf of the Einstein Toolkit Consortium (2014-11-19) +   Steven R. Brandt    Peter Diener    Roland Haas    Ian Hinder File [added]: ET_2014_11_announcement.txt Delta lines: +166 -0 =================================================================== --- about/releases/ET_2014_11_announcement.txt (rev 0) +++ about/releases/ET_2014_11_announcement.txt 2014-11-19 19:12:56 UTC (rev 1454) @@ -0,0 +1,166 @@ +We are pleased to announce the tenth release (code name "Herschel" (Caroline)) +of the Einstein Toolkit, an open, community developed software infrastructure +for relativistic astrophysics. + +This release includes various improvements in the handling of external +libraries (and with that, installations), and extensions of basis thorns (most +notably HydroBase). In addition, bug fixes accumulated since the previous +release in May 2014 have been included, and most of the source code +repositories moved from svn (hosted by the ET directly) to git (hosted by +BitBucket). + +For more detailed information about the "Herschel" release please read +the long release announcement on the Einstein Toolkit web pages: +http://einsteintoolkit.org/about/releases/ET_2014_11_announcement.php. + +The Einstein Toolkit is a collection of software components and tools for +simulating and analyzing general relativistic astrophysical systems that builds +on numerous software efforts in the numerical relativity community including +CactusEinstein, the Carpet AMR infrastructure and the relativistic +magneto-hydrodynamics code GRHydro. The Cactus Framework is used as the underlying +computational infrastructure providing large-scale parallelization, general +computational components, and a model for collaborative, portable code +development. The toolkit includes modules to build complete codes for +simulating black hole spacetimes as well as systems governed by relativistic +magneto-hydrodynamics. + +The Einstein Toolkit uses a distributed software model and its different +modules are developed, distributed, and supported either by the core team of +Einstein Toolkit Maintainers, or by individual groups. Where modules are +provided by external groups, the Einstein Toolkit Maintainers provide quality +control for modules for inclusion in the toolkit and help coordinate support. +The Einstein Toolkit Maintainers currently involve postdocs and faculty from +six different institutions, and host weekly meetings that are open for anyone +to join in. + +Guiding principles for the design and implementation of the toolkit include: +open, community-driven software development; well thought out and stable +interfaces; separation of physics software from computational science +infrastructure; provision of complete working production code; training and +education for a new generation of researchers. + +For more information about using or contributing to the Einstein Toolkit, or to +join the Einstein Toolkit Consortium, please visit our web pages at +http://einsteintoolkit.org. + +The Einstein Toolkit is primarily supported by NSF +1212401/1212426/1212433/1212460 (Einstein Toolkit), and also by 0905046/0941653 +(PetaCactus) and 0710874 (LONI Grid). + +The Einstein Toolkit contains about 200 regression test cases. On a large +portion of the tested machines, almost all of these test suites pass, using both +MPI and OpenMP parallelization. + +The changes between this and the previous release include: + +=== Larger changes since last release === + +* Repositories + - Many repositories converted from Subversion to Git, including some + reorganization of thorns within arrangements. + - Deprecated components (still present) + - ADMCoupling + - ADMMacros + - New components: + - CUDA and OpenCL examples + - PAPI + - OpenBLAS + - MemSpeed<li> + - NaNCatcher + - Moved components: + - Almost all thorns except ExternalLibraries moved to Bitbucket + - GRHydro and GRHydro_InitData into EinsteinEvolve + - All Carpet thorns moved to Carpet arrangement (now on BitBucket) + +* Simfactory + - Source repository moved to BitBucket + - Updates to many machines + +* HDF5 + - Enable fortran interface by default, disable C++ interface by default. + +* MPI + - Rewrite MPI thorn configuration script to attempt to determine paths + automatically using mpicxx. Automatic detection should succeed on most + machines (no MPI variable set in option list); if not, setting MPI_DIR to + the installation directory of the desired MPI installation should in most + cases suffice. + +* Cactus: + - Plan to change output filename format from implementation::groupname to + implementation__groupname. Introduced new parameter + IOUtil::out_group_separator which currently defaults to '::' to maintain + compatibility. The next release will change this to '__' for compatibility + with Windows filesystems. + +* Kranc: + - Kranc: Compatibility fixes for Mathematica 10 + +=== How to upgrade from Wheeler (ET_2014_05) === + +To upgrade from the previous release, use GetComponents with the new thornlist +to check out the new version. Switching to the new branch is not possible for +most repositories due to the repository move. + +See the [http://einsteintoolkit.org/download Download] page on the Einstein +Toolkit website for download instructions. + +=== Remaining issues with this release === + +* Certain machines need to be configured specially in Simfactory because the + remote directories cannot be determined automatically just from the user + name. See the Machine notes below. + +* Recovering with Carpet: Carpet stores metadata (such as the simulation time) + only for Carpet::max_timelevels time levels, although it is possible to + allocate more time levels. These additional time levels then cannot be + recovered; the symptom is an assertion failure during recovery. The solution + is to either increase Carpet::max_timelevels, or to decrease the number of + active time levels. + +=== Machine notes === + +Supported (tested) machines include: + +- Default Debian, Suse, Fedora and MacOS installations +- Bethe +- Bluewaters * +- Carver +- Datura +- Gordon +- Hopper +- Hydra +- Loewe +- Supermike II * +- Nvidia * +- Orca * +- Philip +- Shelob +- Stampede (CPU) * +- Trestles +- Zwicky + +A * means that a small number of tests fail on that machine. Almost all tests +pass on the other machines. + +* Stampede: defs.local.ini needs to have sourcebasedir = $WORK and basedir = + $SCRATCH/simulations configured for this machine. You need to determine + $WORK and $SCRATCH by logging in to the machine. + +All repositories participating in this release carry a branch ET_2014_11 +marking this release. These release branches will be updated if severe +errors are found. + +The "Herschel" Release Team on behalf of the Einstein Toolkit Consortium (2014-11-19) + + +Steven R. Brandt +Peter Diener +Roland Haas +Ian Hinder +Frank LÃ¶ffler +Bruno C. Mundim +Erik Schnetter + +Nov 19, 2014 +

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[svn:einsteintoolkit] www/about/releases/ (Rev. 1453)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 12:53 PM Modified: /about/releases/ ET_2014_11_announcement.php Log: fix link File Changes: Directory: /about/releases/ =========================== File [modified]: ET_2014_11_announcement.php Delta lines: +1 -1 =================================================================== --- about/releases/ET_2014_11_announcement.php 2014-11-19 18:49:09 UTC (rev 1452) +++ about/releases/ET_2014_11_announcement.php 2014-11-19 18:53:36 UTC (rev 1453) @@ -2,7 +2,7 @@ include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> We are pleased to announce the tenth release (code name -"<a href="http://en.wikipedia.org/wiki/Caroline_Herschel">Herschel (Caroline)</a>") of the +"<a href="http://en.wikipedia.org/wiki/Caroline_Herschel">Herschel</a>" (Caroline)) of the Einstein Toolkit, an open, community developed software infrastructure for relativistic astrophysics. This release includes various improvements in the handling of external libraries (and with that, installations), and extensions of basis thorns (most notably

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Commits November 2014