Commits November 2014

commits@lists.einsteintoolkit.org

10 participants
106 discussions

[svn:einsteintoolkit] www/about/releases/ (Rev. 1452)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 12:49 PM Modified: /about/releases/ index.php Log: update for next release File Changes: Directory: /about/releases/ =========================== File [modified]: index.php Delta lines: +4 -2 =================================================================== --- about/releases/index.php 2014-11-19 18:46:49 UTC (rev 1451) +++ about/releases/index.php 2014-11-19 18:49:09 UTC (rev 1452) @@ -2,8 +2,8 @@ include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> The most recent release of the Einstein Toolkit - is <tt>ET_2014_05</tt>, code named - "<a href="http://en.wikipedia.org/wiki/John_Archibald_Wheeler">Wheeler</a>". + is <tt>ET_2014_11</tt>, code named + "<a href="http://en.wikipedia.org/wiki/Caroline_Herschel">Herschel</a>". We expect this version to remain unchanged, save for correcting serious problems that may be detected. This version should be your first choice if you are new to the Einstein Toolkit, or if you want @@ -18,6 +18,8 @@ <hrule /> List of Einstein Toolkit releases: <ul> + <li><tt>ET_2014_11</tt> "Herschel", + <a href="ET_2014_11_announcement.php">released 2014-11-19</a></li> <li><tt>ET_2014_05</tt> "Wheeler", <a href="ET_2014_05_announcement.php">released 2014-05-21</a></li> <li><tt>ET_2013_11</tt> "Noether",

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[svn:einsteintoolkit] www/download/ (Rev. 1451)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 12:46 PM Modified: /download/ index.php Log: use branch name and not hash in direct git link' File Changes: Directory: /download/ ===================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- download/index.php 2014-11-19 18:45:42 UTC (rev 1450) +++ download/index.php 2014-11-19 18:46:49 UTC (rev 1451) @@ -26,7 +26,7 @@ chmod a+x GetComponents -./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/6b063fb0db2e573a66cbb98f… +./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2014_11/einsteintoolk… </pre> A tarball of the release is also available <a href="http://einsteintoolkit.org/tarballs/">here</a>,

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[svn:einsteintoolkit] www/about/gallery/ (Rev. 1450)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 12:45 PM Modified: /about/gallery/ index.php Log: update link to new thornlist File Changes: Directory: /about/gallery/ ========================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- about/gallery/index.php 2014-11-19 18:42:40 UTC (rev 1449) +++ about/gallery/index.php 2014-11-19 18:45:42 UTC (rev 1450) @@ -36,7 +36,7 @@ both time and computational power are typically scarce. <table> <tr><th>Parameter file</th><td><a href="tov.par">tov.par</a></td></tr> - <tr><th>Thornlist</th><td><a href="https://svn.einsteintoolkit.org/manifest/branches/ET_2014_05/einsteintoolki…">ET Wheeler release</a></td></tr> + <tr><th>Thornlist</th><td><a href="https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2014_11/einsteintoolk…">ET Herschel release</a></td></tr> <tr><th>approx. memory</th><td>0.25 GB</td></tr> <tr><th>approx. runtime</th><td>2.5 SU</td></tr> </table>

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[svn:einsteintoolkit] www/ (Rev. 1449)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 12:42 PM Modified: /about/ index.php /download/ index.php Log: update about page File Changes: Directory: /about/ ================== File [modified]: index.php Delta lines: +16 -10 =================================================================== --- about/index.php 2014-11-19 16:19:06 UTC (rev 1448) +++ about/index.php 2014-11-19 18:42:40 UTC (rev 1449) @@ -31,7 +31,7 @@ The tools and thorns comprising the Einstein Toolkit are provided in a standard Cactus - thornlist: <a href="https://svn.einsteintoolkit.org/manifest/branches/ET_2014_05/einsteintoolki…">Einstein + thornlist: <a href="https://bitbucket.org/einsteintoolkit/manifest/raw/ET_2014_11/einsteintoolk…">Einstein Toolkit Thornlist</a>. A <a href="http://docs.einsteintoolkit.org/et-docs/Tutorial_for_New_Users">tutorial</a> describes in easy steps how to download, compile, and run the @@ -63,9 +63,9 @@ the source code and associated tools for simulations, including Cactus thorns. The component list is written using the Component Retrieval Language and can be checked out using - the <a href="https://github.com/gridaphobe/CRL/raw/ET_2014_05/GetComponents" + the <a href="https://github.com/gridaphobe/CRL/raw/ET_2014_11/GetComponents" class="nostyle">GetComponents</a> tools. -Distribution: <a href="https://github.com/gridaphobe/CRL/raw/ET_2014_05/GetComponents">https://github.com/gridaphobe/CRL/raw/ET_2014_05/GetComponents</a> +Distribution: <a href="https://github.com/gridaphobe/CRL/raw/ET_2014_11/GetComponents">https://github.com/gridaphobe/CRL/raw/ET_2014_11/GetComponents</a> </td> </tr> @@ -82,17 +82,21 @@ mechanism for supporting the easy use of Cactus on heterogeneous resources. -Distribution: CCT SVN -repository: <a href="https://svn.cct.lsu.edu/repos/numrel/simfactory2/branches/ET_2014_05">https://svn.cct.lsu.edu/repos/numrel/simfactory2/branches/ET_2014_05</a></td> +Distribution: Bitbucket git +repository: <a href="https://bitbucket.org/simfactory/simfactory2">https://bitbucket.org/simfactory/simfactory2</a> (ET_2014_11 branch)</td> </tr> <tr> <td valign="top">Cactus Thorns</td> <td>Code for the centrally supported Cactus thorns in the Einstein -Toolkit. Additional thorns are maintained in external repositories +Toolkit. Additional thorns are maintained in external repositories with open access. -Distribution: Einstein Toolkit -SVN repository overview +Distribution: Bitbucket: +<a href="https://bitbucket.org/cactuscode">Cactuscode</a> and +<a href="https://bitbucket.org/einsteintoolkit">Einstein Toolkit"</a>. +Some components are also living in the Einstein Toolkit +SVN repository, an overview of which is here, but includes also components that now +moved to Bitbucket: <a href="https://svn.einsteintoolkit.org/cactus">https://svn.einsteintoolkit.org/cactus/</a> </td> </tr> @@ -103,9 +107,11 @@ beginners. Simple examples are provided for a Kerr-Schild black hole, a binary black hole coalescence, and a static TOV star. See the documentation for information on how to run these on the - QueenBee machine. + QueenBee 2 machine. -Distribution: <a href="https://svn.einsteintoolkit.org/cactus/EinsteinExamples/branches/ET_2014_05…">https://svn.einsteintoolkit.org/cactus/EinsteinExamples/branches/ET_2014_05…</a> +Distribution: <a href="https://bitbucket.org/cactuscode/cactusexamples">Cactuscode</a> and +<a href="https://bitbucket.org/einsteintoolkit/einsteinexamples">EinsteinToolkit</a> (choose +ET_2014_11 branch for both). </td> </tr> </table> Directory: /download/ ===================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- download/index.php 2014-11-19 16:19:06 UTC (rev 1448) +++ download/index.php 2014-11-19 18:42:40 UTC (rev 1449) @@ -15,7 +15,7 @@ commands listed below. This will create a directory called Cactus in which the components of the Einstein Toolkit are downloaded. -<h4>Current release: Herschel (released on Nov 17th, 2014)</h4> +<h4>Current release: Herschel (released on Nov 19th, 2014)</h4> This is the recommended version of the toolkit for most users. See the <a href = "../about/releases/ET_2014_11_announcement.php">release

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[svn:einsteintoolkit] www/about/releases/ (Rev. 1448)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 10:19 AM Modified: /about/releases/ ET_2014_11_announcement.php Log: obmit QB2 for now - tests ran, but configuration isn't yet available in simfactory, and cluster isn't officially open yet either File Changes: Directory: /about/releases/ =========================== File [modified]: ET_2014_11_announcement.php Delta lines: +1 -1 =================================================================== --- about/releases/ET_2014_11_announcement.php 2014-11-19 16:17:48 UTC (rev 1447) +++ about/releases/ET_2014_11_announcement.php 2014-11-19 16:19:06 UTC (rev 1448) @@ -152,7 +152,7 @@ <li> Nvidia *</li> <li> Orca *</li> <li> Philip</li> - <li> Queenbee 2</li> + <li> Shelob</li> <li> Stampede (CPU) *</li> <li> Trestles</li>

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[svn:einsteintoolkit] www/about/releases/ (Rev. 1447)
by knarf＠cct.lsu.edu 19 Nov '14

19 Nov '14

User: knarf Date: 2014/11/19 10:17 AM Modified: /about/releases/ ET_2014_11_announcement.php Log: work on announcement File Changes: Directory: /about/releases/ =========================== File [modified]: ET_2014_11_announcement.php Delta lines: +55 -46 =================================================================== --- about/releases/ET_2014_11_announcement.php 2014-11-17 17:28:13 UTC (rev 1446) +++ about/releases/ET_2014_11_announcement.php 2014-11-19 16:17:48 UTC (rev 1447) @@ -2,10 +2,13 @@ include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> We are pleased to announce the tenth release (code name -"<a href="http://en.wikipedia.org/wiki/XXX">XXX</a>") of the +"<a href="http://en.wikipedia.org/wiki/Caroline_Herschel">Herschel (Caroline)</a>") of the Einstein Toolkit, an open, community developed software infrastructure for -relativistic astrophysics. This release includes XXX. In addition, bug fixes accumulated since the -previous release in May 2014 have been included. +relativistic astrophysics. This release includes various improvements in the handling of +external libraries (and with that, installations), and extensions of basis thorns (most notably +HydroBase). In addition, bug fixes accumulated since the +previous release in May 2014 have been included, and most of the source code repositories +moved from svn (hosted by the ET directly) to git (hosted by BitBucket). The Einstein Toolkit is a collection of software components and tools for simulating and analyzing general relativistic astrophysical systems that builds @@ -52,13 +55,13 @@ <ul> <li>Repositories <ul> - <li>Many repositories converted from Subversion to Git</li> + <li>Many repositories converted from Subversion to Git, including some reorganization of thorns within arrangements.</li> </ul> </li> - <li>Removed components + <li>Deprecated components (still present) <ul> - <li>ADMConstraints (use ML_ADMConstraints instead)</li> - <li>Boost</li> + <li>ADMCoupling</li> + <li>ADMMacros</li> </ul> </li> <li>New components: @@ -66,30 +69,38 @@ <li>CUDA and OpenCL examples</li> <li>PAPI</li> <li>OpenBLAS</li> + <li>MemSpeed<li> + <li>NaNCatcher</li> </ul> </li> <li>Moved components: <ul> + <li>Almost all thorns except ExternalLibraries moved to Bitbucket</li> <li>GRHydro and GRHydro_InitData into EinsteinEvolve</li> - <li>All Carpet thorns moved to Carpet arrangement</li> + <li>All Carpet thorns moved to Carpet arrangement (now on BitBucket)</li> </ul> </li> <li>Simfactory <ul> - <li>updates to many machines</li> + <li>Source repository moved to BitBucket + <li>Updates to many machines</li> </ul> </li> <li>HDF5 <ul> - <li>enable fortran interface by default, disable C++ interface by -default. (TODO: check this is right)</li> + <li>Enable fortran interface by default, disable C++ interface by +default.</li> </ul> </li> <li>MPI <ul> <li>Rewrite MPI thorn configuration script to attempt to determine - paths automatically using mpicxx. (TODO: add more details about what - people might need to change in their optionlists)</li> + paths automatically using mpicxx. + Automatic detection should succeed on most machines (no MPI variable set + in option list); if not, setting + MPI_DIR to the installation directory of the desired MPI installation + should in most cases suffice. + </li> </ul> </li> @@ -98,8 +109,8 @@ <li>Plan to change output filename format from implementation::groupname to implementation__groupname. Introduced new parameter IOUtil::out_group_separator which currently defaults to '::' to - maintain compatibility. The next release will change this to '-' for - compatibility with Windows filesystems, to which current Cactus simulations cannot even be copied.</li> + maintain compatibility. The next release will change this to '__' for + compatibility with Windows filesystems.</li> </ul> </li> @@ -112,7 +123,7 @@ <ul><li>How to upgrade from Wheeler (ET_2014_05)</li></ul> -To upgrade from the previous release, use GetComponents with the new thornlist to check out the new version. +To upgrade from the previous release, use GetComponents with the new thornlist to check out the new version. Switching to the new branch is not possible for most repositories due to the repository move. See the <a href="http://einsteintoolkit.org/download/">Download</a> page on the Einstein Toolkit website for download instructions. @@ -128,47 +139,45 @@ Supported (tested) machines include: <ul> -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  -  + <li> Default Debian, Suse, Fedora and MacOS installations</li> + <li> Bethe</li> + <li> Bluewaters *</li> + <li> Carver</li> + <li> Datura</li> + <li> Gordon</li> + <li> Hopper</li> + <li> Hydra</li> + <li> Loewe</li> + <li> Supermike II *</li> + <li> Nvidia *</li> + <li> Orca *</li> + <li> Philip</li> + <li> Queenbee 2</li> + <li> Shelob</li> + <li> Stampede (CPU) *</li> + <li> Trestles</li> + <li> Zwicky</li> </ul> -A * means that a small number of tests still fail on that machine. All tests pass on the other machines. +A * means that a small number of tests fail on that machine. Almost all tests pass on the other machines. <ul> - <li> LoneStar and Stampede: defs.local.ini needs to have sourcebasedir = $WORK and basedir = $SCRATCH/simulations configured for this machine. You need to determine $WORK and $SCRATCH by logging in to the machine.</li> + <li> Stampede: defs.local.ini needs to have sourcebasedir = $WORK and basedir = $SCRATCH/simulations configured for this machine. You need to determine $WORK and $SCRATCH by logging in to the machine.</li> </ul> All repositories participating in this release carry a branch ET_2014_11 marking this release. These release branches will be updated if severe errors are found. -The "XXX" Release Team on behalf of the Einstein Toolkit Consortium (2014-11-XX) +The "Herschel" Release Team on behalf of the Einstein Toolkit Consortium (2014-11-19) - - - - - - +   Peter Diener +   Roland Haas +   Ian Hinder +   Frank LÃ¶ffler +   Bruno C. Mundim +   Erik Schnetter -Nov XX, 2014 +Nov 19, 2014 <?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?>

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commit/EinsteinExamples: knarrff: Switch from ADMConstraints to ML_ADMConstraints
by Bitbucket 17 Nov '14

17 Nov '14

1 new commit in EinsteinExamples: https://bitbucket.org/einsteintoolkit/einsteinexamples/commits/fdac6ae2339f/ Changeset: fdac6ae2339f Branch: master User: knarrff Date: 2014-11-17 17:49:40+00:00 Summary: Switch from ADMConstraints to ML_ADMConstraints Affected #: 1 file Repository URL: https://bitbucket.org/einsteintoolkit/einsteinexamples/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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[svn:einsteintoolkit] www/download/ (Rev. 1446)
by knarf＠cct.lsu.edu 17 Nov '14

17 Nov '14

User: knarf Date: 2014/11/17 11:28 AM Modified: /download/ index.php Log: typo File Changes: Directory: /download/ ===================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- download/index.php 2014-11-17 17:27:50 UTC (rev 1445) +++ download/index.php 2014-11-17 17:28:13 UTC (rev 1446) @@ -15,7 +15,7 @@ commands listed below. This will create a directory called Cactus in which the components of the Einstein Toolkit are downloaded. -<h4>Current release: Herschel (released on Nov 17t, 2014)</h4> +<h4>Current release: Herschel (released on Nov 17th, 2014)</h4> This is the recommended version of the toolkit for most users. See the <a href = "../about/releases/ET_2014_11_announcement.php">release

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[svn:einsteintoolkit] www/download/ (Rev. 1445)
by knarf＠cct.lsu.edu 17 Nov '14

17 Nov '14

User: knarf Date: 2014/11/17 11:27 AM Modified: /download/ index.php Log: new instructions for downloading the release File Changes: Directory: /download/ ===================== File [modified]: index.php Delta lines: +5 -5 =================================================================== --- download/index.php 2014-11-17 13:48:32 UTC (rev 1444) +++ download/index.php 2014-11-17 17:27:50 UTC (rev 1445) @@ -15,18 +15,18 @@ commands listed below. This will create a directory called Cactus in which the components of the Einstein Toolkit are downloaded. -<h4>Current release: Wheeler (released on May 21st, 2014)</h4> +<h4>Current release: Herschel (released on Nov 17t, 2014)</h4> This is the recommended version of the toolkit for most users. See -the <a href = "../about/releases/ET_2014_05_announcement.php">release +the <a href = "../about/releases/ET_2014_11_announcement.php">release notes</a> for more information. <pre> -curl -kLO https://raw.githubusercontent.com/gridaphobe/CRL/ET_2014_05/GetComponents +curl -kLO https://raw.githubusercontent.com/gridaphobe/CRL/ET_2014_11/GetComponents chmod a+x GetComponents -./GetComponents --parallel https://svn.einsteintoolkit.org/manifest/branches/ET_2014_05/einsteintoolki… +./GetComponents --parallel https://bitbucket.org/einsteintoolkit/manifest/raw/6b063fb0db2e573a66cbb98f… </pre> A tarball of the release is also available <a href="http://einsteintoolkit.org/tarballs/">here</a>, @@ -60,7 +60,7 @@ <li> MPI implementation: This is needed for the Carpet driver (the PUGH driver can be used for single core development on machines without MPI)</li> -<li>Standard development tools: Perl, etc.</li> +<li>Standard development tools: Python, Perl, etc.</li> <li> Operating System: Cactus and the Einstein Toolkit is supported on all commonly used variants of Unix (e.g. linux, MacOSX, AIX). On Microsoft Windows machines the Einstein Toolkit can be used with the cygwin environment, although this is not so regularly tested.</li>

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commit/manifest: knarrff: switch to the correct release branch
by Bitbucket 17 Nov '14

17 Nov '14

1 new commit in manifest: https://bitbucket.org/einsteintoolkit/manifest/commits/85e8441f27b3/ Changeset: 85e8441f27b3 Branch: ET_2014_11 User: knarrff Date: 2014-11-17 17:03:14+00:00 Summary: switch to the correct release branch Affected #: 1 file Repository URL: https://bitbucket.org/einsteintoolkit/manifest/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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Commits November 2014