Commits March 2010

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 107)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 106)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:34 PM Modified: /info/documentation/ index.php Log: Correct simfactory instructions File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +5 -2 =================================================================== --- info/documentation/index.php 2010-03-23 20:30:54 UTC (rev 105) +++ info/documentation/index.php 2010-03-23 20:34:17 UTC (rev 106) @@ -51,7 +51,7 @@ <p>Configure the Simulation Factory</p> -<p><tt>mv simfactory/udb.example.pm simfactory/udb.pm</tt> +<p><tt>cp simfactory/udb.example.pm simfactory/udb.pm</tt> <br><tt>vi simfactory/udb.pm</tt></p> <p>Edit udb.pm and </p> <ul> @@ -60,7 +60,10 @@ <li>YOUR_ALLOCATION with your project allocation on Queen Bee </ul> </p> -<p>NOTE: At the moment you also need to replace the line in mdb.pm with sourcebasedir for Queen Bee with /home/YOUR_LOGIN unless you have a directory in the /project space. We are working on improving this. </p> +<p>NOTE: At the moment you also need to change the line in mdb.pm with + sourcebasedir for Queen Bee from <tt>/project/@USER@</tt> + to </tt>/home/@USER@</tt> unless you have a directory in the + /project space. We are working on improving this. </p> <p>Compile Executable</p>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 105)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:30 PM Modified: /info/documentation/ index.php Log: Describe how to activate git File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +2 -3 =================================================================== --- info/documentation/index.php 2010-03-23 20:17:15 UTC (rev 104) +++ info/documentation/index.php 2010-03-23 20:30:54 UTC (rev 105) @@ -23,9 +23,8 @@ <h4>Prepare some Tools</h4> - +<p>On Queen Bee (qb.loni.org), the <tt>git</tt> client will not be in your path by default. To add this type</p> +<p><tt>soft add +git</tt></p> <p>Download the <a href="http://cactuscode.org/download/GetCactus">GetCactus</a> script for assembling thorns and ensure it is executable:</p>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 104)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:17 PM Modified: /info/documentation/ index.php Log: Update File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +4 -0 =================================================================== --- info/documentation/index.php 2010-03-23 20:12:47 UTC (rev 103) +++ info/documentation/index.php 2010-03-23 20:17:15 UTC (rev 104) @@ -43,6 +43,8 @@ <p>Checkout the Cactus flesh and Einstein Toolkit thorns:</p> <p><tt>./GetCactus -repository=development -install=EinsteinToolkit -defaults einsteintoolkit.th</tt></p> +<p>(This may take a few minutes.)</p> + <p>Move into the Einstein Toolkit directory and download the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/" class="nostyle">Simulation Factory</a> to simplify compiling and running on different machines.<p> @@ -65,6 +67,8 @@ <p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> +<p>(This may take a few minutes.)</p> + <h4>Run a Simulation</h4> <p>From the Einstein Toolkit directory,</p>

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[svn:einsteintoolkit] thornlists/ (Rev. 9)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:14 PM Modified: / einsteintoolkit.th Log: Correct Kranc url File Changes: Directory: / ============ File [modified]: einsteintoolkit.th Delta lines: +1 -1 =================================================================== --- einsteintoolkit.th 2010-03-23 16:00:50 UTC (rev 8) +++ einsteintoolkit.th 2010-03-23 20:14:24 UTC (rev 9) @@ -126,7 +126,7 @@ # For Kranc (required e.g. by McLachlan) !REPOSITORY_TYPE git -!REPOSITORY_LOCATION http://github.com/ianhinder/Kranc.git +!REPOSITORY_LOCATION git://github.com/ianhinder/Kranc.git !REPOSITORY_NAME Kranc/Auxiliary/Cactus KrancNumericalTools/GenericFD

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 103)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:12 PM Modified: /info/documentation/ index.php Log: Correct html File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- info/documentation/index.php 2010-03-23 20:11:38 UTC (rev 102) +++ info/documentation/index.php 2010-03-23 20:12:47 UTC (rev 103) @@ -59,7 +59,7 @@ <li>YOUR_ALLOCATION with your project allocation on Queen Bee </ul> </p> -<p>NOTE: At the moment you also need to replace the line in mdb.pm with sourcebasedir for Queen Bee with /home/<username> unless you have a directory in the /project space. We are working on improving this. </p> +<p>NOTE: At the moment you also need to replace the line in mdb.pm with sourcebasedir for Queen Bee with /home/YOUR_LOGIN unless you have a directory in the /project space. We are working on improving this. </p> <p>Compile Executable</p>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 102)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:11 PM Modified: /info/documentation/ index.php Log: Add more structure to page File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +7 -7 =================================================================== --- info/documentation/index.php 2010-03-23 20:10:49 UTC (rev 101) +++ info/documentation/index.php 2010-03-23 20:11:38 UTC (rev 102) @@ -3,7 +3,7 @@ <p>More documentation will arrive soon, for now we provide brief information for those already familiar with Cactus, and a worked example for beginners. -<h2>For Cactus Experts</h2> +<h3>For Cactus Experts</h3> <p>Use <a href="http://cactuscode.org/download/GetCactus">GetCactus</a> with the Einstein Toolkit <a href="https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th">thornlist</a>. This thornlist should work on platforms supported by the Cactus team using the usual <a href="http://www.cactuscode.org/download/configfiles/">configuration files</a> available on the Cactus web page or with the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/">Simulation Factory</a>. @@ -13,7 +13,7 @@ Problems should be directed to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a>. </p> -<h2>For Cactus Beginners</h2> +<h3>For Cactus Beginners</h3> <p>This section provides a simple guide for compiling and running an example parameter file for the Einstein Toolkit.</p> @@ -21,7 +21,7 @@ <p>This worked example assumes that you are using the NSF TeraGrid resource <a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a>. If you don't have an existing account on Queen Bee you can <a href="request.php">request an account</a> to use for these examples.</p> -<h3>Prepare some Tools</h3> +<h4>Prepare some Tools</h4> <!-- <p>On Queen Bee (qb.loni.org), the <tt>git</tt> client will not be in your path by default. To add this type </p> @@ -38,7 +38,7 @@ <p><tt>wget https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th</tt></p> -<h3>Download, Configure, and Build</h3> +<h4>Download, Configure, and Build</h4> <p>Checkout the Cactus flesh and Einstein Toolkit thorns:</p> @@ -65,7 +65,7 @@ <p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> -<h3>Run a Simulation</h3> +<h4>Run a Simulation</h4> <p>From the Einstein Toolkit directory,</p> @@ -79,11 +79,11 @@ <p><tt>./simfactory/sim list-simulations</tt></p> -<h3>Look at Results</h3> +<h4>Look at Results</h4> <p>When the simulation is complete, move to the output directory (<tt>XXXX</tt>). You should see output files with the extension XXXX. These are 1D plots of the different grid variables. These can be plotted using e.g. gnuplot. An example plot of the XXXX is shown below.</p> -<h3>Any Problems?</h3> +<h4>Any Problems?</h4> This example should work smoothly on the TeraGrid machines Queen Bee, Ranger, Kraken and Abe. If you have any problems, please send details to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a></tt>.</p>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 101)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:10 PM Modified: /info/documentation/ index.php Log: Add more structure to page File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +7 -7 =================================================================== --- info/documentation/index.php 2010-03-23 20:09:52 UTC (rev 100) +++ info/documentation/index.php 2010-03-23 20:10:49 UTC (rev 101) @@ -3,7 +3,7 @@ <p>More documentation will arrive soon, for now we provide brief information for those already familiar with Cactus, and a worked example for beginners. -<h3>For Cactus Experts</h3> +<h2>For Cactus Experts</h2> <p>Use <a href="http://cactuscode.org/download/GetCactus">GetCactus</a> with the Einstein Toolkit <a href="https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th">thornlist</a>. This thornlist should work on platforms supported by the Cactus team using the usual <a href="http://www.cactuscode.org/download/configfiles/">configuration files</a> available on the Cactus web page or with the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/">Simulation Factory</a>. @@ -13,7 +13,7 @@ Problems should be directed to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a>. </p> -<h3>For Cactus Beginners</h3> +<h2>For Cactus Beginners</h2> <p>This section provides a simple guide for compiling and running an example parameter file for the Einstein Toolkit.</p> @@ -21,7 +21,7 @@ <p>This worked example assumes that you are using the NSF TeraGrid resource <a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a>. If you don't have an existing account on Queen Bee you can <a href="request.php">request an account</a> to use for these examples.</p> -<h4>Prepare some Tools</h4> +<h3>Prepare some Tools</h3> <!-- <p>On Queen Bee (qb.loni.org), the <tt>git</tt> client will not be in your path by default. To add this type </p> @@ -38,7 +38,7 @@ <p><tt>wget https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th</tt></p> -<h4>Download, Configure, and Build</h4> +<h3>Download, Configure, and Build</h3> <p>Checkout the Cactus flesh and Einstein Toolkit thorns:</p> @@ -65,7 +65,7 @@ <p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> -<h4>Run a Simulation</h4> +<h3>Run a Simulation</h3> <p>From the Einstein Toolkit directory,</p> @@ -79,11 +79,11 @@ <p><tt>./simfactory/sim list-simulations</tt></p> -<h4>Look at Results</h4> +<h3>Look at Results</h3> <p>When the simulation is complete, move to the output directory (<tt>XXXX</tt>). You should see output files with the extension XXXX. These are 1D plots of the different grid variables. These can be plotted using e.g. gnuplot. An example plot of the XXXX is shown below.</p> -<h4>Any Problems?</h4> +<h3>Any Problems?</h3> This example should work smoothly on the TeraGrid machines Queen Bee, Ranger, Kraken and Abe. If you have any problems, please send details to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a></tt>.</p>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 100)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:09 PM Modified: /info/documentation/ index.php Log: Add more structure to page File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +4 -14 =================================================================== --- info/documentation/index.php 2010-03-23 20:07:51 UTC (rev 99) +++ info/documentation/index.php 2010-03-23 20:09:52 UTC (rev 100) @@ -21,10 +21,8 @@ <p>This worked example assumes that you are using the NSF TeraGrid resource <a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a>. If you don't have an existing account on Queen Bee you can <a href="request.php">request an account</a> to use for these examples.</p> -<h4>Preparations some Tools</h4> +<h4>Prepare some Tools</h4> -<p><b>Preparations:</b></p> -  @@ -40,10 +38,8 @@ <p><tt>wget https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th</tt></p> -<h4>Download and Build</h4> +<h4>Download, Configure, and Build</h4> -<p><b>Download Software:</b></p> - <p>Checkout the Cactus flesh and Einstein Toolkit thorns:</p> <p><tt>./GetCactus -repository=development -install=EinsteinToolkit -defaults einsteintoolkit.th</tt></p> @@ -65,20 +61,16 @@ <p>NOTE: At the moment you also need to replace the line in mdb.pm with sourcebasedir for Queen Bee with /home/<username> unless you have a directory in the /project space. We are working on improving this. </p> -<p><b>Compile Executable:</b></p> +<p>Compile Executable</p> <p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> <h4>Run a Simulation</h4> -<p><b>Download Einstein Toolkit Examples:</b></p> - <p>From the Einstein Toolkit directory,</p> <p><tt>svn co https://svn.einsteintoolkit.org/cactus/EinsteinExamples/par/</tt></p> -<p><b>Submit a Simulation:</b> - <p>Create a batch queue script and submit it to queue the simulation:</p> <p><tt>./simfactory/sim create-submit static_tov --parfile=par/static_tov.par --procs=32 --walltime=8:0:0</tt></p> @@ -89,11 +81,9 @@ <h4>Look at Results</h4> -<p><b>Looking at Results:</b></p> - <p>When the simulation is complete, move to the output directory (<tt>XXXX</tt>). You should see output files with the extension XXXX. These are 1D plots of the different grid variables. These can be plotted using e.g. gnuplot. An example plot of the XXXX is shown below.</p> -<p><b>Any Problems?</b></p> +<h4>Any Problems?</h4> This example should work smoothly on the TeraGrid machines Queen Bee, Ranger, Kraken and Abe. If you have any problems, please send details to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a></tt>.</p>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 99)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 03:07 PM Modified: /info/documentation/ index.php Log: Add more structure to page File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +11 -4 =================================================================== --- info/documentation/index.php 2010-03-23 15:31:45 UTC (rev 98) +++ info/documentation/index.php 2010-03-23 20:07:51 UTC (rev 99) @@ -21,6 +21,8 @@ <p>This worked example assumes that you are using the NSF TeraGrid resource <a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a>. If you don't have an existing account on Queen Bee you can <a href="request.php">request an account</a> to use for these examples.</p> +<h4>Preparations some Tools</h4> + <p><b>Preparations:</b></p> <!-- <p>On Queen Bee (qb.loni.org), the <tt>git</tt> client will not be in your path by default. To add this type @@ -38,6 +40,7 @@ <p><tt>wget https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th</tt></p> +<h4>Download and Build</h4> <p><b>Download Software:</b></p> @@ -62,16 +65,18 @@ <p>NOTE: At the moment you also need to replace the line in mdb.pm with sourcebasedir for Queen Bee with /home/<username> unless you have a directory in the /project space. We are working on improving this. </p> +<p><b>Compile Executable:</b></p> + +<p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> + +<h4>Run a Simulation</h4> + <p><b>Download Einstein Toolkit Examples:</b></p> <p>From the Einstein Toolkit directory,</p> <p><tt>svn co https://svn.einsteintoolkit.org/cactus/EinsteinExamples/par/</tt></p> - -<p><b>Compile Executable:</b></p> -<p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> - <p><b>Submit a Simulation:</b> <p>Create a batch queue script and submit it to queue the simulation:</p> @@ -82,6 +87,8 @@ <p><tt>./simfactory/sim list-simulations</tt></p> +<h4>Look at Results</h4> + <p><b>Looking at Results:</b></p> <p>When the simulation is complete, move to the output directory (<tt>XXXX</tt>). You should see output files with the extension XXXX. These are 1D plots of the different grid variables. These can be plotted using e.g. gnuplot. An example plot of the XXXX is shown below.</p>

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Commits March 2010