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[svn:einsteintoolkit] www/about/contributors/ (Rev. 94)
by gallen＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: gallen Date: 2010/03/21 08:22 PM Removed: /about/contributors/ Log: Moved contributers to the credits page

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 93)
by cjordan＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: cjordan Date: 2010/03/21 07:25 PM Modified: /info/documentation/ send-account.php Log: modifying email notification string File Changes: Directory: /info/documentation/ =============================== File [modified]: send-account.php Delta lines: +1 -1 =================================================================== --- info/documentation/send-account.php 2010-03-22 00:21:45 UTC (rev 92) +++ info/documentation/send-account.php 2010-03-22 00:25:50 UTC (rev 93) @@ -17,7 +17,7 @@ } -$message = "Einstein Toolkit maintainers: \n\n".$name." a(n) ".$position." in the ".$department." at ".$institution." has submitted a request for a test account for the Einstein Toolkit. His or her email address is ".$email.". ".$mentionadvisor." \n\n Thanks,\n Einstein Toolkit Request Bot\n"; +$message = "Einstein Toolkit maintainers: \n\n".$name.", a(n) ".$position." in the ".$department." Department at ".$institution.", has submitted a request for a test account for the Einstein Toolkit. His or her email address is ".$email.". ".$mentionadvisor." \n\n Thanks,\n Einstein Toolkit Request Bot\n"; /* PHP form validation: the script checks that the Email field contains a valid email address and the Subject field isn't empty. preg_match performs a regular expression match. It's a very powerful PHP function to validate form fields and other strings - see PHP manual for details. */ if ($name == '') {

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 92)
by cjordan＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: cjordan Date: 2010/03/21 07:21 PM Modified: /info/documentation/ request.php, send-account.php Log: tweaking a few things in the new email form File Changes: Directory: /info/documentation/ =============================== File [modified]: request.php Delta lines: +6 -6 =================================================================== --- info/documentation/request.php 2010-03-21 23:23:30 UTC (rev 91) +++ info/documentation/request.php 2010-03-22 00:21:45 UTC (rev 92) @@ -23,15 +23,15 @@ </tr> <tr> <td>Position</td> -<td><input type="radio" name="list" value="undergraduate" checked /> undergraduate -<input type="radio" name="list" value="graduate student" /> graduate student<br> -<input type="radio" name="list" value="postdoc" /> postdoc -<input type="radio" name="list" value="researcher" /> researcher -<input type="radio" name="list" value="faculty" /> faculty +<td><input type="radio" name="position" value="undergraduate" checked /> undergraduate +<input type="radio" name="position" value="graduate student" /> graduate student<br> +<input type="radio" name="position" value="postdoc" /> postdoc +<input type="radio" name="position" value="researcher" /> researcher +<input type="radio" name="position" value="faculty" /> faculty </td> </tr> <tr> -<td>Advisor if Student: </td> +<td>Advisor (if student): </td> <td><input type="text" name="advisor" /></td> </tr> <tr> File [modified]: send-account.php Delta lines: +2 -2 =================================================================== --- info/documentation/send-account.php 2010-03-21 23:23:30 UTC (rev 91) +++ info/documentation/send-account.php 2010-03-22 00:21:45 UTC (rev 92) @@ -13,11 +13,11 @@ $advisor = $HTTP_POST_VARS['advisor']; if ($position=='undergraduate' || $position=='graduate') { -$addtolist = 'This students advisor is $advisor.'; +$mentionadvisor = 'This student\'s advisor is '.$advisor.'.'; } -$message = "Einstein Toolkit maintainers: \n\n".$name." a ".$position$." in the ".$department."at".$institution." has submitted a request for a test account for the Einstein Toolkit. His or her email address is ".$email.".".$addtolist." \n\n Thanks,\n Einstein Toolkit Request Bot\n"; +$message = "Einstein Toolkit maintainers: \n\n".$name." a(n) ".$position." in the ".$department." at ".$institution." has submitted a request for a test account for the Einstein Toolkit. His or her email address is ".$email.". ".$mentionadvisor." \n\n Thanks,\n Einstein Toolkit Request Bot\n"; /* PHP form validation: the script checks that the Email field contains a valid email address and the Subject field isn't empty. preg_match performs a regular expression match. It's a very powerful PHP function to validate form fields and other strings - see PHP manual for details. */ if ($name == '') {

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 91)
by gallen＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: gallen Date: 2010/03/21 06:23 PM Modified: /info/documentation/ request.php Log: missed the advisor field File Changes: Directory: /info/documentation/ =============================== File [modified]: request.php Delta lines: +4 -0 =================================================================== --- info/documentation/request.php 2010-03-21 23:22:11 UTC (rev 90) +++ info/documentation/request.php 2010-03-21 23:23:30 UTC (rev 91) @@ -31,6 +31,10 @@ </td> </tr> <tr> +<td>Advisor if Student: </td> +<td><input type="text" name="advisor" /></td> +</tr> +<tr> <td></td> <td><input type="submit" value="Submit" /></td> </tr>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 90)
by gallen＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: gallen Date: 2010/03/21 06:22 PM Added: /info/documentation/ request.php, send-account.php Modified: /info/documentation/ index.php Log: added an account request interface File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +6 -2 =================================================================== --- info/documentation/index.php 2010-03-20 19:32:24 UTC (rev 89) +++ info/documentation/index.php 2010-03-21 23:22:11 UTC (rev 90) @@ -51,8 +51,12 @@ <p><tt> cd Cactus<br>svn checkout https://svn.cct.lsu.edu/repos/numrel/simfactory</tt></p> -<p>Configure the Simulation Factory (XXXX just the global email address?)</p> +<p>Configure the Simulation Factory</p> +<p><tt>mv simfactory/udb.example.pm simfactory/udb.pm</tt> +<br><tt>vi simfactory/udb.pm</tt></p> +<p>Edit udb.pm and replace LOGIN_NAME with your username on Queen Bee.</p> + <p><b>Download Einstein Toolkit Examples:</b></p> <p>From the Cactus directory,</p> @@ -67,7 +71,7 @@ <p>Create a batch queue script and submit it to queue the simulation:</p> -<p><tt>./simfactory/sim create-submit --parfile=EinsteinExamples/par/ks-mclachlan.par --procs=32 --walltime=8:0:0</tt></p> +<p><tt>./simfactory/sim create-submit static_TOV --parfile=EinsteinExamples/par/static_TOV.par --procs=32 --walltime=8:0:0</tt></p> <p>To check the status of the simulation, use</p> File [added]: request.php Delta lines: +42 -0 =================================================================== --- info/documentation/request.php (rev 0) +++ info/documentation/request.php 2010-03-21 23:22:11 UTC (rev 90) @@ -0,0 +1,42 @@ +<?php $title='Request Test Account'; +include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> + +<p>Please fill out the following information to request a test account for the Einstein Toolkit.</p> + +<form name="request" action="send-account" method="post"> +<table> +<tr> +<td>Name: </td> +<td><input type="text" name="name" /></td> +</tr> +<tr> +<td>Email: </td> +<td><input type="text" name="email" /></td> +</tr> +<tr> +<td>Department: </td> +<td><input type="text" name="department" /></td> +</tr> +<tr> +<td>Institution: </td> +<td><input type="text" name="institution" /></td> +</tr> +<tr> +<td>Position</td> +<td><input type="radio" name="list" value="undergraduate" checked /> undergraduate +<input type="radio" name="list" value="graduate student" /> graduate student<br> +<input type="radio" name="list" value="postdoc" /> postdoc +<input type="radio" name="list" value="researcher" /> researcher +<input type="radio" name="list" value="faculty" /> faculty +</td> +</tr> +<tr> +<td></td> +<td><input type="submit" value="Submit" /></td> +</tr> +</table> +</form> + + + +<?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> Property changes on: info/documentation/request.php ___________________________________________________________________ Name: svn:executable + * File [added]: send-account.php Delta lines: +44 -0 =================================================================== --- info/documentation/send-account.php (rev 0) +++ info/documentation/send-account.php 2010-03-21 23:22:11 UTC (rev 90) @@ -0,0 +1,44 @@ +<?php $title='Sending account request...'; +include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php'); ?> + +<br /> + +<?php +/* All form fields are automatically passed to the PHP script through the array $HTTP_POST_VARS. */ +$name = $HTTP_POST_VARS['name']; +$email = $HTTP_POST_VARS['email']; +$department = $HTTP_POST_VARS['department']; +$institution = $HTTP_POST_VARS['institution']; +$position = $HTTP_POST_VARS['position']; +$advisor = $HTTP_POST_VARS['advisor']; + +if ($position=='undergraduate' || $position=='graduate') { +$addtolist = 'This students advisor is $advisor.'; +} + + +$message = "Einstein Toolkit maintainers: \n\n".$name." a ".$position$." in the ".$department."at".$institution." has submitted a request for a test account for the Einstein Toolkit. His or her email address is ".$email.".".$addtolist." \n\n Thanks,\n Einstein Toolkit Request Bot\n"; + +/* PHP form validation: the script checks that the Email field contains a valid email address and the Subject field isn't empty. preg_match performs a regular expression match. It's a very powerful PHP function to validate form fields and other strings - see PHP manual for details. */ +if ($name == '') { + echo '<h4>Please fill in your name.</h4>'; + echo '<br /><a href="javascript:history.back(1);">Try again</a>'; + } + elseif (!preg_match("/\w+([-+.]\w+)*(a)\w+([-.]\w+)*\.\w+([-.]\w+)*/", $email)) { + echo '<h4>Please provide a valid email address.</h4>'; + echo '<br /><a href="javascript:history.back(1);">Try again</a>'; +} + +/* Sends the mail and outputs the "Thank you" string if the mail is successfully sent, or the error string otherwise. */ +elseif (mail('maintainers(a)einsteintoolkit.org','New Einstein Toolkit test account request received',$message,'From: RegistrationBot(a)einsteintoolkit.org')) { + echo '<h4>Your request for a test account has been successfully submitted. You will hear from us soon.</h4>'; + echo '<br /><a href="/">Home</a>'; +} else { + echo '<h4>Unfortunately, there was a problem requesting an account.</h4>'; + echo '<a href="javascript:history.back(1);">Go back to try again?</a>'; +} +?> + +<br /><br /> + +<?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> \ No newline at end of file

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[svn:einsteintoolkit] par/ (Rev. 4)
by schnetter＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: eschnett Date: 2010/03/21 04:26 PM Added: / ks-mclachlan.par, qc0-mclachlan.par Log: Add more example parameter files File Changes: Directory: / ============ File [added]: ks-mclachlan.par Delta lines: +397 -0 =================================================================== --- ks-mclachlan.par (rev 0) +++ ks-mclachlan.par 2010-03-21 21:26:08 UTC (rev 4) @@ -0,0 +1,397 @@ +Cactus::cctk_run_title = "Kerr-Schild" + +Cactus::cctk_full_warnings = yes +Cactus::highlight_warning_messages = no + +Cactus::terminate = "time" +Cactus::cctk_final_time = 100.0 + + + +ActiveThorns = "IOUtil" + +IO::out_dir = $parfile + + + +ActiveThorns = "AEILocalInterp" + +ActiveThorns = "Fortran" + +ActiveThorns = "GSL" + +ActiveThorns = "GenericFD" + +ActiveThorns = "HDF5" + +ActiveThorns = "LocalInterp" + +ActiveThorns = "LoopControl" + +ActiveThorns = "Slab" + + + +ActiveThorns = "InitBase" + + + +ActiveThorns = "Carpet CarpetLib CarpetInterp CarpetReduce CarpetSlab" + +Carpet::verbose = no +Carpet::veryverbose = no +Carpet::schedule_barriers = no +Carpet::storage_verbose = no +Carpet::timers_verbose = no +CarpetLib::output_bboxes = no + +Carpet::domain_from_coordbase = yes +Carpet::max_refinement_levels = 10 + +driver::ghost_size = 3 +Carpet::use_buffer_zones = yes + +Carpet::prolongation_order_space = 5 +Carpet::prolongation_order_time = 2 + +Carpet::convergence_level = 0 + +Carpet::init_fill_timelevels = yes + +Carpet::poison_new_timelevels = yes +CarpetLib::poison_new_memory = yes + +Carpet::output_timers_every = 5120 +CarpetLib::print_timestats_every = 5120 +CarpetLib::print_memstats_every = 5120 + + + +ActiveThorns = "NaNChecker" + +NaNChecker::check_every = 512 +NaNChecker::action_if_found = "just warn" +NaNChecker::check_vars = " + ML_BSSN::ML_log_confac + ML_BSSN::ML_metric + ML_BSSN::ML_trace_curv + ML_BSSN::ML_curv + ML_BSSN::ML_Gamma + ML_BSSN::ML_lapse + ML_BSSN::ML_shift + ML_BSSN::ML_dtlapse + ML_BSSN::ML_dtshift + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift +" + + + +ActiveThorns = "Boundary CartGrid3D CoordBase ReflectionSymmetry RotatingSymmetry90 SymBase" + +CoordBase::domainsize = "minmax" + +CoordBase::xmin = 0.00 +CoordBase::ymin = 0.00 +CoordBase::zmin = 0.00 +CoordBase::xmax = +120.00 +CoordBase::ymax = +120.00 +CoordBase::zmax = +120.00 +CoordBase::dx = 2.00 +CoordBase::dy = 2.00 +CoordBase::dz = 2.00 + +CoordBase::boundary_size_x_lower = 3 +CoordBase::boundary_size_y_lower = 3 +CoordBase::boundary_size_z_lower = 3 +CoordBase::boundary_size_x_upper = 3 +CoordBase::boundary_size_y_upper = 3 +CoordBase::boundary_size_z_upper = 3 + +CoordBase::boundary_shiftout_x_lower = 1 +CoordBase::boundary_shiftout_y_lower = 1 +CoordBase::boundary_shiftout_z_lower = 1 + +CartGrid3D::type = "coordbase" + +ReflectionSymmetry::reflection_z = yes +ReflectionSymmetry::avoid_origin_z = no + + + +ActiveThorns = "SphericalSurface" + +SphericalSurface::nsurfaces = 1 +SphericalSurface::maxntheta = 39 +SphericalSurface::maxnphi = 76 + +SphericalSurface::ntheta [0] = 39 +SphericalSurface::nphi [0] = 76 +SphericalSurface::nghoststheta[0] = 2 +SphericalSurface::nghostsphi [0] = 2 + + + +ActiveThorns = "CarpetMask" + +CarpetMask::excluded_surface [0] = 0 +CarpetMask::excluded_surface_factor[0] = 1.0 + + + +ActiveThorns = "CarpetRegrid2 CarpetTracker" + +CarpetTracker::surface[0] = 0 + +CarpetRegrid2::regrid_every = 0 +CarpetRegrid2::freeze_unaligned_levels = yes +CarpetRegrid2::symmetry_rotating90 = yes +CarpetRegrid2::verbose = yes + +CarpetRegrid2::num_centres = 1 + +CarpetRegrid2::num_levels_1 = 6 +CarpetRegrid2::radius_1[1] = 60.0 +CarpetRegrid2::radius_1[2] = 30.0 +CarpetRegrid2::radius_1[3] = 15.0 +CarpetRegrid2::radius_1[4] = 7.5 +CarpetRegrid2::radius_1[5] = 3.75 + + + +ActiveThorns = "MoL Time" + +MoL::ODE_Method = "RK4" +MoL::MoL_Intermediate_Steps = 4 +MoL::MoL_Num_Scratch_Levels = 1 + +Time::dtfac = 0.40 + + + +ActiveThorns = "ADMBase ADMCoupling ADMMacros CoordGauge SpaceMask StaticConformal TmunuBase" + + + +ActiveThorns = "Exact" + +ADMBase::initial_data = "exact" +ADMBase::initial_lapse = "exact" +ADMBase::initial_shift = "exact" +ADMBase::initial_dtlapse = "exact" +ADMBase::initial_dtshift = "exact" + +Exact::exact_model = "Kerr/Kerr-Schild" +Exact::Kerr_KerrSchild__mass = 1.0 +Exact::Kerr_KerrSchild__spin = 0.8 +Exact::Kerr_KerrSchild__parabolic = yes +Exact::Kerr_KerrSchild__power = 8 +Exact::Kerr_KerrSchild__epsilon = 1.0 + + + +ActiveThorns = "ML_BSSN ML_BSSN_Helper NewRad" + +ADMBase::evolution_method = "ML_BSSN" +ADMBase::lapse_evolution_method = "ML_BSSN" +ADMBase::shift_evolution_method = "ML_BSSN" +ADMBase::dtlapse_evolution_method = "ML_BSSN" +ADMBase::dtshift_evolution_method = "ML_BSSN" + +ML_BSSN::timelevels = 3 + +ML_BSSN::harmonicN = 1 # 1+log +ML_BSSN::harmonicF = 2.0 # 1+log +ML_BSSN::ShiftGammaCoeff = 0.75 +ML_BSSN::AlphaDriver = 1.0 +ML_BSSN::BetaDriver = 1.0 +ML_BSSN::LapseAdvectionCoeff = 0.0 +ML_BSSN::ShiftAdvectionCoeff = 0.0 + +ML_BSSN::MinimumLapse = 1.0e-8 + +ML_BSSN::dt_lapse_shift_method = "noLapseShiftAdvection" + +ML_BSSN::my_initial_boundary_condition = "extrapolate-gammas" +ML_BSSN::my_rhs_boundary_condition = "NewRad" +Boundary::radpower = 2 + +ML_BSSN::ML_log_confac_bound = "none" +ML_BSSN::ML_metric_bound = "none" +ML_BSSN::ML_Gamma_bound = "none" +ML_BSSN::ML_trace_curv_bound = "none" +ML_BSSN::ML_curv_bound = "none" +ML_BSSN::ML_lapse_bound = "none" +ML_BSSN::ML_dtlapse_bound = "none" +ML_BSSN::ML_shift_bound = "none" +ML_BSSN::ML_dtshift_bound = "none" + + + +ActiveThorns = "Dissipation" + +Dissipation::order = 5 +Dissipation::vars = " + ML_BSSN::ML_log_confac + ML_BSSN::ML_metric + ML_BSSN::ML_trace_curv + ML_BSSN::ML_curv + ML_BSSN::ML_Gamma + ML_BSSN::ML_lapse + ML_BSSN::ML_shift + ML_BSSN::ML_dtlapse + ML_BSSN::ML_dtshift +" + + + +ActiveThorns = "ML_ADMConstraints" + + + +ActiveThorns = "AHFinderDirect" + +AHFinderDirect::find_every = 1280 + +AHFinderDirect::run_at_CCTK_POST_RECOVER_VARIABLES = no + +AHFinderDirect::geometry_interpolator_name = "Lagrange polynomial interpolation" +AHFinderDirect::geometry_interpolator_pars = "order=4" +AHFinderDirect::surface_interpolator_name = "Lagrange polynomial interpolation" +AHFinderDirect::surface_interpolator_pars = "order=4" + +AHFinderDirect::output_h_every = 0 + +AHFinderDirect::N_horizons = 1 + +AHFinderDirect::initial_guess__coord_sphere__radius[1] = 2.0 +AHFinderDirect::which_surface_to_store_info [1] = 0 +AHFinderDirect::reset_horizon_after_not_finding [1] = no + + + +ActiveThorns = "CarpetIOBasic" + +IOBasic::outInfo_every = 1280 +IOBasic::outInfo_reductions = "norm2" +IOBasic::outInfo_vars = " + Carpet::physical_time_per_hour + ML_ADMConstraints::H +" + + + +ActiveThorns = "CarpetIOScalar" + +IOScalar::one_file_per_group = yes + +IOScalar::outScalar_every = 1280 +IOScalar::outScalar_vars = " + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom + SphericalSurface::sf_radius +" + + + +ActiveThorns = "CarpetIOASCII" + +IOASCII::one_file_per_group = yes + +IOASCII::output_symmetry_points = no +IOASCII::out3D_ghosts = no + +IOASCII::out0D_every = 1280 +IOASCII::out0D_vars = " + Carpet::timing + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom + SphericalSurface::sf_active + SphericalSurface::sf_valid + SphericalSurface::sf_info + SphericalSurface::sf_radius + SphericalSurface::sf_origin + SphericalSurface::sf_coordinate_descriptors +" + +IOASCII::out1D_every = 1280 +IOASCII::out1D_vars = " + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom + SphericalSurface::sf_radius +" + +IOASCII::out2D_every = 1280 +IOASCII::out2D_vars = " + SphericalSurface::sf_radius +" + + + +Activethorns = "CarpetIOHDF5" + +IOHDF5::out_every = 5120 +IOHDF5::one_file_per_group = yes +IOHDF5::output_symmetry_points = no +IOHDF5::out3D_ghosts = no +IOHDF5::compression_level = 1 +IOHDF5::use_checksums = yes +IOHDF5::out_vars = " + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom +" + +#IOHDF5::checkpoint = yes +#IO::checkpoint_dir = $parfile +#IO::checkpoint_ID = yes +#IO::checkpoint_every_walltime_hours = 6.0 +#IO::checkpoint_on_terminate = yes +# +#IO::recover = "autoprobe" +#IO::recover_dir = $parfile + + + +ActiveThorns = "Formaline" + + + +ActiveThorns = "TimerReport" + +TimerReport::out_every = 5120 +TimerReport::out_filename = "TimerReport" +TimerReport::output_all_timers_together = yes +TimerReport::output_all_timers_readable = yes +TimerReport::n_top_timers = 20 File [added]: qc0-mclachlan.par Delta lines: +512 -0 =================================================================== --- qc0-mclachlan.par (rev 0) +++ qc0-mclachlan.par 2010-03-21 21:26:08 UTC (rev 4) @@ -0,0 +1,512 @@ +Cactus::cctk_run_title = "QC-0" + +Cactus::cctk_full_warnings = yes +Cactus::highlight_warning_messages = no + +Cactus::terminate = "time" +Cactus::cctk_final_time = 100.0 + + + +ActiveThorns = "IOUtil" + +IO::out_dir = $parfile + + + +ActiveThorns = "AEILocalInterp" + +ActiveThorns = "BLAS LAPACK" + +ActiveThorns = "Fortran" + +ActiveThorns = "GenericFD" + +ActiveThorns = "HDF5" + +ActiveThorns = "LocalInterp" + +ActiveThorns = "LoopControl" + +ActiveThorns = "Slab" + +ActiveThorns = "SpinHarmonics" + +ActiveThorns = "TGRtensor" + + + +ActiveThorns = "SummationByParts" + +SummationByParts::order = 4 + + + +ActiveThorns = "InitBase" + + + +ActiveThorns = "Carpet CarpetLib CarpetInterp CarpetReduce CarpetSlab" + +Carpet::verbose = no +Carpet::veryverbose = no +Carpet::schedule_barriers = no +Carpet::storage_verbose = no +Carpet::timers_verbose = no +CarpetLib::output_bboxes = no + +Carpet::domain_from_coordbase = yes +Carpet::max_refinement_levels = 10 + +driver::ghost_size = 3 +Carpet::use_buffer_zones = yes + +Carpet::prolongation_order_space = 5 +Carpet::prolongation_order_time = 2 + +Carpet::convergence_level = 0 + +#Carpet::init_fill_timelevels = yes +Carpet::init_3_timelevels = yes + +Carpet::poison_new_timelevels = yes +CarpetLib::poison_new_memory = yes + +Carpet::output_timers_every = 5120 +CarpetLib::print_timestats_every = 5120 +CarpetLib::print_memstats_every = 5120 + + + +ActiveThorns = "NaNChecker" + +NaNChecker::check_every = 1 # 512 +#NaNChecker::verbose = "all" +#NaNChecker::action_if_found = "just warn" +NaNChecker::action_if_found = "terminate" +NaNChecker::check_vars = " + ML_BSSN::ML_log_confac + ML_BSSN::ML_metric + ML_BSSN::ML_trace_curv + ML_BSSN::ML_curv + ML_BSSN::ML_Gamma + ML_BSSN::ML_lapse + ML_BSSN::ML_shift + ML_BSSN::ML_dtlapse + ML_BSSN::ML_dtshift + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift +" + + + +ActiveThorns = "Boundary CartGrid3D CoordBase ReflectionSymmetry RotatingSymmetry180 SymBase" + +CoordBase::domainsize = "minmax" + +CoordBase::xmin = 0.00 +CoordBase::ymin = -120.00 +CoordBase::zmin = 0.00 +CoordBase::xmax = +120.00 +CoordBase::ymax = +120.00 +CoordBase::zmax = +120.00 +CoordBase::dx = 2.00 +CoordBase::dy = 2.00 +CoordBase::dz = 2.00 + +CoordBase::boundary_size_x_lower = 3 +CoordBase::boundary_size_y_lower = 3 +CoordBase::boundary_size_z_lower = 3 +CoordBase::boundary_size_x_upper = 3 +CoordBase::boundary_size_y_upper = 3 +CoordBase::boundary_size_z_upper = 3 + +CoordBase::boundary_shiftout_x_lower = 1 +CoordBase::boundary_shiftout_z_lower = 1 + +CartGrid3D::type = "coordbase" + +ReflectionSymmetry::reflection_z = yes +ReflectionSymmetry::avoid_origin_z = no + + + +ActiveThorns = "SphericalSurface" + +SphericalSurface::nsurfaces = 6 +SphericalSurface::maxntheta = 39 +SphericalSurface::maxnphi = 76 + +SphericalSurface::ntheta [0] = 39 +SphericalSurface::nphi [0] = 76 +SphericalSurface::nghoststheta[0] = 2 +SphericalSurface::nghostsphi [0] = 2 + +SphericalSurface::ntheta [1] = 39 +SphericalSurface::nphi [1] = 76 +SphericalSurface::nghoststheta[1] = 2 +SphericalSurface::nghostsphi [1] = 2 + +SphericalSurface::ntheta [2] = 39 +SphericalSurface::nphi [2] = 76 +SphericalSurface::nghoststheta[2] = 2 +SphericalSurface::nghostsphi [2] = 2 + +SphericalSurface::ntheta [3] = 39 +SphericalSurface::nphi [3] = 76 +SphericalSurface::nghoststheta[3] = 2 +SphericalSurface::nghostsphi [3] = 2 + +SphericalSurface::ntheta [4] = 39 +SphericalSurface::nphi [4] = 76 +SphericalSurface::nghoststheta[4] = 2 +SphericalSurface::nghostsphi [4] = 2 + +SphericalSurface::ntheta [5] = 39 +SphericalSurface::nphi [5] = 76 +SphericalSurface::nghoststheta[5] = 2 +SphericalSurface::nghostsphi [5] = 2 + + + +ActiveThorns = "CarpetMask" + +CarpetMask::verbose = no + +CarpetMask::excluded_surface [0] = 0 +CarpetMask::excluded_surface_factor[0] = 1.0 + +CarpetMask::excluded_surface [1] = 1 +CarpetMask::excluded_surface_factor[1] = 1.0 + +CarpetMask::excluded_surface [2] = 2 +CarpetMask::excluded_surface_factor[2] = 1.0 + + + +ActiveThorns = "CarpetRegrid2 CarpetTracker" + +CarpetTracker::surface[0] = 0 +CarpetTracker::surface[1] = 1 +CarpetTracker::surface[2] = 2 + +CarpetRegrid2::regrid_every = 128 +CarpetRegrid2::freeze_unaligned_levels = yes +CarpetRegrid2::symmetry_rotating180 = yes +CarpetRegrid2::verbose = yes + +CarpetRegrid2::num_centres = 3 + +CarpetRegrid2::num_levels_1 = 7 +CarpetRegrid2::position_x_1 = +1.168642873 +CarpetRegrid2::radius_1[ 1] = 64.0 +CarpetRegrid2::radius_1[ 2] = 16.0 +CarpetRegrid2::radius_1[ 3] = 8.0 +CarpetRegrid2::radius_1[ 4] = 4.0 +CarpetRegrid2::radius_1[ 5] = 2.0 +CarpetRegrid2::radius_1[ 6] = 1.0 +CarpetRegrid2::movement_threshold_1 = 0.16 + +CarpetRegrid2::num_levels_2 = 7 +CarpetRegrid2::position_x_2 = -1.168642873 +CarpetRegrid2::radius_2[ 1] = 64.0 +CarpetRegrid2::radius_2[ 2] = 16.0 +CarpetRegrid2::radius_2[ 3] = 8.0 +CarpetRegrid2::radius_2[ 4] = 4.0 +CarpetRegrid2::radius_2[ 5] = 2.0 +CarpetRegrid2::radius_2[ 6] = 1.0 +CarpetRegrid2::movement_threshold_2 = 0.16 + +CarpetRegrid2::num_levels_3 = 7 +CarpetRegrid2::active_3 = no +CarpetRegrid2::radius_3[ 1] = 64.0 +CarpetRegrid2::radius_3[ 2] = 16.0 +CarpetRegrid2::radius_3[ 3] = 8.0 +CarpetRegrid2::radius_3[ 4] = 4.0 +CarpetRegrid2::radius_3[ 5] = 2.0 +CarpetRegrid2::radius_3[ 6] = 1.0 +CarpetRegrid2::movement_threshold_3 = 0.16 + + + +ActiveThorns = "MoL Time" + +MoL::ODE_Method = "RK4" +MoL::MoL_Intermediate_Steps = 4 +MoL::MoL_Num_Scratch_Levels = 1 + +Carpet::time_refinement_factors = "[1, 1, 2, 4, 8, 16, 32, 64, 128, 256]" + +Time::dtfac = 0.25 + + + +ActiveThorns = "ADMBase ADMCoupling ADMMacros CoordGauge SpaceMask StaticConformal TmunuBase" + +ADMMacros::spatial_order = 4 + + + +ActiveThorns = "TwoPunctures" + +ADMBase::metric_type = "physical" + +ADMBase::initial_data = "twopunctures" +ADMBase::initial_lapse = "twopunctures-averaged" +ADMBase::initial_shift = "zero" +ADMBase::initial_dtlapse = "zero" +ADMBase::initial_dtshift = "zero" + +TwoPunctures::par_b = 1.168642873 +TwoPunctures::par_m_plus = 0.453 +TwoPunctures::par_m_minus = 0.453 +TwoPunctures::par_P_plus [1] = +0.3331917498 +TwoPunctures::par_P_minus[1] = -0.3331917498 + +#TODO# TwoPunctures::grid_setup_method = "evaluation" + +TwoPunctures::TP_epsilon = 1.0e-2 +TwoPunctures::TP_Tiny = 1.0e-2 + +TwoPunctures::verbose = yes + + + +ActiveThorns = "ML_BSSN ML_BSSN_Helper NewRad" + +ADMBase::evolution_method = "ML_BSSN" +ADMBase::lapse_evolution_method = "ML_BSSN" +ADMBase::shift_evolution_method = "ML_BSSN" +ADMBase::dtlapse_evolution_method = "ML_BSSN" +ADMBase::dtshift_evolution_method = "ML_BSSN" + +ML_BSSN::harmonicN = 1 # 1+log +ML_BSSN::harmonicF = 2.0 # 1+log +ML_BSSN::ShiftGammaCoeff = 0.75 +ML_BSSN::BetaDriver = 1.0 +ML_BSSN::LapseAdvectionCoeff = 1.0 +ML_BSSN::ShiftAdvectionCoeff = 1.0 + +ML_BSSN::MinimumLapse = 1.0e-8 + +ML_BSSN::my_initial_boundary_condition = "extrapolate-gammas" +ML_BSSN::my_rhs_boundary_condition = "NewRad" +Boundary::radpower = 2 + +ML_BSSN::ML_log_confac_bound = "none" +ML_BSSN::ML_metric_bound = "none" +ML_BSSN::ML_Gamma_bound = "none" +ML_BSSN::ML_trace_curv_bound = "none" +ML_BSSN::ML_curv_bound = "none" +ML_BSSN::ML_lapse_bound = "none" +ML_BSSN::ML_dtlapse_bound = "none" +ML_BSSN::ML_shift_bound = "none" +ML_BSSN::ML_dtshift_bound = "none" + + + +ActiveThorns = "Dissipation" + +Dissipation::order = 5 +Dissipation::vars = " + ML_BSSN::ML_log_confac + ML_BSSN::ML_metric + ML_BSSN::ML_trace_curv + ML_BSSN::ML_curv + ML_BSSN::ML_Gamma + ML_BSSN::ML_lapse + ML_BSSN::ML_shift + ML_BSSN::ML_dtlapse + ML_BSSN::ML_dtshift +" + + + +ActiveThorns = "ML_ADMConstraints" + + + +ActiveThorns = "AHFinderDirect" + +AHFinderDirect::find_every = 128 + +AHFinderDirect::run_at_CCTK_POST_RECOVER_VARIABLES = no + +AHFinderDirect::move_origins = yes +AHFinderDirect::reshape_while_moving = yes +AHFinderDirect::predict_origin_movement = yes + +AHFinderDirect::geometry_interpolator_name = "Lagrange polynomial interpolation" +AHFinderDirect::geometry_interpolator_pars = "order=4" +AHFinderDirect::surface_interpolator_name = "Lagrange polynomial interpolation" +AHFinderDirect::surface_interpolator_pars = "order=4" + +AHFinderDirect::output_h_every = 0 + +AHFinderDirect::N_horizons = 6 + +AHFinderDirect::origin_x [1] = +1.168642873 +AHFinderDirect::initial_guess__coord_sphere__x_center[1] = +1.168642873 +AHFinderDirect::initial_guess__coord_sphere__radius [1] = 0.25 +AHFinderDirect::which_surface_to_store_info [1] = 0 +AHFinderDirect::reset_horizon_after_not_finding [1] = no +AHFinderDirect::dont_find_after_individual_time [1] = 30.0 + +AHFinderDirect::origin_x [2] = -1.168642873 +AHFinderDirect::initial_guess__coord_sphere__x_center[2] = -1.168642873 +AHFinderDirect::initial_guess__coord_sphere__radius [2] = 0.25 +AHFinderDirect::which_surface_to_store_info [2] = 1 +AHFinderDirect::reset_horizon_after_not_finding [2] = no +AHFinderDirect::dont_find_after_individual_time [2] = 30.0 + +AHFinderDirect::initial_guess__coord_sphere__radius [3] = 1.0 +AHFinderDirect::which_surface_to_store_info [3] = 2 +AHFinderDirect::reset_horizon_after_not_finding [3] = no +AHFinderDirect::find_after_individual_time [3] = 15.0 + +AHFinderDirect::surface_definition [4] = "expansion product" +AHFinderDirect::surface_selection [4] = "areal radius" +AHFinderDirect::desired_value [4] = 50.0 +AHFinderDirect::initial_guess__coord_sphere__radius [4] = 50.0 +AHFinderDirect::which_surface_to_store_info [4] = 3 +AHFinderDirect::reset_horizon_after_not_finding [4] = no + +AHFinderDirect::depends_on [5] = 1 +AHFinderDirect::desired_value_offset [5] = 0.001 +AHFinderDirect::which_surface_to_store_info [5] = 4 +AHFinderDirect::reset_horizon_after_not_finding [5] = no +AHFinderDirect::dont_find_after_individual_time [5] = 30.0 + +AHFinderDirect::depends_on [6] = 3 +AHFinderDirect::desired_value_offset [6] = 0.001 +AHFinderDirect::which_surface_to_store_info [6] = 5 +AHFinderDirect::reset_horizon_after_not_finding [6] = no +AHFinderDirect::find_after_individual_time [6] = 15.0 + + + +ActiveThorns = "CarpetIOBasic" + +IOBasic::outInfo_every = 128 +IOBasic::outInfo_reductions = "norm2" +IOBasic::outInfo_vars = " + Carpet::physical_time_per_hour + ML_ADMConstraints::H +" + + + +ActiveThorns = "CarpetIOScalar" + +IOScalar::one_file_per_group = yes + +IOScalar::outScalar_every = 128 +IOScalar::outScalar_vars = " + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom + SphericalSurface::sf_radius +" + + + +ActiveThorns = "CarpetIOASCII" + +IOASCII::one_file_per_group = yes + +IOASCII::output_symmetry_points = no +IOASCII::out3D_ghosts = no + +IOASCII::out0D_every = 128 +IOASCII::out0D_vars = " + Carpet::timing + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom + SphericalSurface::sf_active + SphericalSurface::sf_valid + SphericalSurface::sf_info + SphericalSurface::sf_radius + SphericalSurface::sf_origin + SphericalSurface::sf_coordinate_descriptors +" + +IOASCII::out1D_every = 128 +IOASCII::out1D_vars = " + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom + SphericalSurface::sf_radius +" + +IOASCII::out2D_every = 128 +IOASCII::out2D_vars = " + SphericalSurface::sf_radius +" + + + +Activethorns = "CarpetIOHDF5" + +IOHDF5::out_every = 512 +IOHDF5::one_file_per_group = yes +IOHDF5::output_symmetry_points = no +IOHDF5::out3D_ghosts = no +IOHDF5::compression_level = 1 +IOHDF5::use_checksums = yes +IOHDF5::out_vars = " + CarpetReduce::weight + ADMBase::metric + ADMBase::curv + ADMBase::lapse + ADMBase::shift + ADMBase::dtlapse + ADMBase::dtshift + ML_ADMConstraints::ML_Ham + ML_ADMConstraints::ML_mom +" + +IOHDF5::checkpoint = yes +IO::checkpoint_dir = $parfile +IO::checkpoint_ID = yes +IO::checkpoint_every_walltime_hours = 6.0 +IO::checkpoint_on_terminate = yes + +IO::recover = "autoprobe" +IO::recover_dir = $parfile + + + +ActiveThorns = "Formaline" + + + +ActiveThorns = "TimerReport" + +TimerReport::out_every = 5120 +TimerReport::out_filename = "TimerReport" +TimerReport::output_all_timers_together = yes +TimerReport::output_all_timers_readable = yes +TimerReport::n_top_timers = 20

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[svn:einsteintoolkit] par/ (Rev. 3)
by schnetter＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: eschnett Date: 2010/03/21 04:25 PM Removed: / test Log: Remove empty file File Changes: Directory: / ============ File [removed]: test Delta lines: +0 -0 ===================================================================

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[svn:einsteintoolkit] www/about/developers/ (Rev. 89)
by cjordan＠cct.lsu.edu 20 Mar '10

20 Mar '10

User: cjordan Date: 2010/03/20 02:32 PM Modified: /about/developers/ colby.jpg Log: adding more recent picture of myself File Changes: Directory: /about/developers/ ============================= File [modified]: colby.jpg Delta lines: +0 -0 =================================================================== (Binary files differ)

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[svn:einsteintoolkit] www/toolkit/capabilities/ (Rev. 88)
by gallen＠cct.lsu.edu 20 Mar '10

20 Mar '10

User: gallen Date: 2010/03/20 10:07 AM Modified: /toolkit/capabilities/ index.php Log: Adding more capabilities File Changes: Directory: /toolkit/capabilities/ ================================= File [modified]: index.php Delta lines: +32 -3 =================================================================== --- toolkit/capabilities/index.php 2010-03-20 15:06:22 UTC (rev 87) +++ toolkit/capabilities/index.php 2010-03-20 15:07:52 UTC (rev 88) @@ -1,4 +1,4 @@ -<?php $title='Science Features'; +<?php $title='Capabilities'; include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> <h3>Vacuum Spacetimes</h3> @@ -33,12 +33,41 @@ <ul> <li>Single and binary black holes</li> <li>Single TOV stars</li> +<li>LORENE data</li> </ul> +<h3>Relativity Tools</h3> + +<ul> +<li>Apparent horizon finding</li> +<li>Black hole excision</li> +</ul> + <h3>Analysis</h3> <ul> + <li>TrK, det(g), R_ab, R + <li>ADM constraint violation</li> <li>Basic hydrodynamics analysis routines</li> - <li>Wave extration of gravitational waves</li> -</u;> + <li>Extraction of gravitational waves</li> +</ul> +<h3>Computational Infrastructure</h3> +<ul> + <li>Adaptive mesh refinement</li> + <li>Reflection and rotation symmetry boundary conditions</li> + <li>Radiation boundary conditions</li> + <li>Flexible Cartesian 3-D meshes + <li>Multidimensional I/O using HDF5, ASCII, Jpegs + <li>Method of lines time integration + <li>Courant time steeping + <li>Seamless use of BLAS, GSL, HDF5, LAPACK +</ul> + +<h3>Tools</h3> +<ul> + <li>Checking for NaNs + <li>Memory poisoning to identify uninitialized variables + <li>Timing report by thorn, schedule bin, and method +</ul> + <?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?>

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 87)
by gallen＠cct.lsu.edu 20 Mar '10

20 Mar '10

User: gallen Date: 2010/03/20 10:06 AM Modified: /info/documentation/ index.php Log: simplifying instructions File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +16 -23 =================================================================== --- info/documentation/index.php 2010-03-20 15:05:56 UTC (rev 86) +++ info/documentation/index.php 2010-03-20 15:06:22 UTC (rev 87) @@ -5,40 +5,35 @@ <h3>For Cactus Experts</h3> -<p>The Einstein Toolkit can be checked out using GetCactus using the -<a href="https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th">Einstein Toolkit</a> thornlist. This thornlist should compile and -run on platforms supported by the Cactus team using the usual Cactus <a href="http://www.cactuscode.org/download/configfiles/">configuration files</a> available on the Cactus web page or with the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/">Simulation Factory</a>. -</p> -<p> +<p>Use <a href="http://cactuscode.org/download/GetCactus">GetCactus</a> with the +Einstein Toolkit <a href="https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th">thornlist</a>. This thornlist should work on platforms supported by the Cactus team using the usual <a href="http://www.cactuscode.org/download/configfiles/">configuration files</a> available on the Cactus web page or with the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/">Simulation Factory</a>. Example parameter files are provided in the Einstein Toolkit SVN repository.</p> <p><tt>svn checkout https://svn.einsteintoolkit.org/EinsteinExamples/</tt></p> <p> -Problems with compiling or running should be directed to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a>. + Problems should be directed to <a href="mailto:users@einsteintoolkit.org">users(a)einsteintoolkit.org</a>. </p> <h3>For Cactus Beginners</h3> <p>This section provides a simple guide for compiling and running an example parameter file for the Einstein Toolkit.</p> -<p>One of the complexities of high performance computing, particularly for new users, is the heterogeneous environments presented by different resources with different core software installations and local setups. For example, Einstein Toolkit codes necessitate compiling with MPI and then running the resulting application in a batch queue. As much as possible of this complexity is hidden in Cactus and accompanying tools such as the Simulation Factory.</p> +<p>One complexities of high performance computing is the heterogeneous environments presented by different resources with different core software installations and local setups. For example, Einstein Toolkit codes necessitate compiling with MPI and then running the resulting application in a batch queue. As much as possible of this complexity is hidden in Cactus and accompanying tools such as the Simulation Factory.</p> -<p>This example assumes that the NSF TeraGrid resource Queen Bee at the LONI/LSU site is being used.</p> +<p>This worked example assumes the use of the NSF TeraGrid resource Queen Bee.</p> - <p><b>Preparations:</b></p> - <p>On Queen Bee (qb.loni.org), the <tt>git</tt> client will not be in your path by default. To add this type + -<p>Download the <a href="http://cactuscode.org/download/GetCactus">GetCactus</a> script for assembling thorns from a thornlist:</p> +<p>Download the <a href="http://cactuscode.org/download/GetCactus">GetCactus</a> script for assembling thorns and ensure it is executable:</p> -<p><tt>wget http://cactuscode.org/download/GetCactus</tt></p> +<p><tt>wget http://cactuscode.org/download/GetCactus</tt> +<br> +<tt>chmod 755 GetCactus</tt></p> - <p>You will need to make sure that GetCactus is executable</p> -<p><tt>chmod 755 GetCactus</tt></p> - <p>Download the <a href="https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th">thornlist</a> for the Einstein Toolkit:</p> <p><tt>wget https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th</tt></p> @@ -46,19 +41,17 @@ <p><b>Download Software:</b></p> -<p>In the location where you want to compile Cactus checkout the flesh and Einstein Toolkit thorns: -</p> +<p>Checkout the Cactus flesh and Einstein Toolkit thorns:</p> -<p><tt>GetCactus -repository=development -defaults einsteintoolkit.th </tt></p> +<p><tt>./GetCactus -repository=development -defaults einsteintoolkit.th </tt></p> +<p>NOTE: It may be necessary to temporarily accept certificates as the thorns are checked out, we are working on resolving this issue.</p> - <p>NOTE: It may be necessary to temporarily accept certificates as the thorns are checked out, we are working on resolving this issue.</p> - -<p>Move into the Cactus directory and download the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/">Simulation Factory</a> (tool for configuring and running Cactus on particular machines.)<p> +<p>Move into the Cactus directory and download the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/" class="nostyle">Simulation Factory</a> to simplify compiling and running on different machines.<p> <p><tt> cd Cactus<br>svn checkout https://svn.cct.lsu.edu/repos/numrel/simfactory</tt></p> -<p>You now need to configure the Simulation Factory (XXXX just the global email address?)</p> +<p>Configure the Simulation Factory (XXXX just the global email address?)</p> <p><b>Download Einstein Toolkit Examples:</b></p>

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