Commits March 2010

commits@lists.einsteintoolkit.org

6 participants
74 discussions

[svn:einsteintoolkit] thornlists/ (Rev. 8)
by schnetter＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: eschnett Date: 2010/03/23 11:00 AM Modified: / einsteintoolkit.th Log: Use http instead of https to access AEI repositories File Changes: Directory: / ============ File [modified]: einsteintoolkit.th Delta lines: +1 -1 =================================================================== --- einsteintoolkit.th 2010-03-22 17:28:09 UTC (rev 7) +++ einsteintoolkit.th 2010-03-23 16:00:50 UTC (rev 8) @@ -87,7 +87,7 @@ # Useful thorns from the AEI -!REPOSITORY_TYPE svn:https:// +!REPOSITORY_TYPE svn:http:// !REPOSITORY_LOCATION svn.aei.mpg.de !REPOSITORY_NAME T:/numrel/*/trunk

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[svn:einsteintoolkit] www/info/documentation/ (Rev. 98)
by gallen＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: gallen Date: 2010/03/23 10:31 AM Modified: /info/documentation/ index.php Log: Basic instructions work down to running File Changes: Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +6 -8 =================================================================== --- info/documentation/index.php 2010-03-23 09:35:14 UTC (rev 97) +++ info/documentation/index.php 2010-03-23 15:31:45 UTC (rev 98) @@ -43,13 +43,11 @@ <p>Checkout the Cactus flesh and Einstein Toolkit thorns:</p> -<p><tt>./GetCactus -repository=development -defaults einsteintoolkit.th </tt></p> -<p>NOTE: It may be necessary to temporarily accept certificates as the thorns are checked out, we are working on resolving this issue.</p> - -<p>Move into the Cactus directory and download the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/" class="nostyle">Simulation Factory</a> to simplify compiling and running on different machines.<p> +<p><tt>./GetCactus -repository=development -install=EinsteinToolkit -defaults einsteintoolkit.th</tt></p> +<p>Move into the Einstein Toolkit directory and download the <a href="http://www.cct.lsu.edu/~eschnett/SimFactory/" class="nostyle">Simulation Factory</a> to simplify compiling and running on different machines.<p> -<p><tt> cd Cactus<br>svn checkout https://svn.cct.lsu.edu/repos/numrel/simfactory</tt></p> +<p><tt> cd EinsteinToolkit<br>svn checkout https://svn.cct.lsu.edu/repos/numrel/simfactory</tt></p> <p>Configure the Simulation Factory</p> @@ -62,17 +60,17 @@ <li>YOUR_ALLOCATION with your project allocation on Queen Bee </ul> </p> -<p>NOTE: At the moment you also need to replace the line with sourcebasedir for Queen Bee with /home/<username> unless you have a directory in the /project space. We are working on improving this. </p> +<p>NOTE: At the moment you also need to replace the line in mdb.pm with sourcebasedir for Queen Bee with /home/<username> unless you have a directory in the /project space. We are working on improving this. </p> <p><b>Download Einstein Toolkit Examples:</b></p> -<p>From the Cactus directory,</p> +<p>From the Einstein Toolkit directory,</p> <p><tt>svn co https://svn.einsteintoolkit.org/cactus/EinsteinExamples/par/</tt></p> <p><b>Compile Executable:</b></p> -<p><tt>./simfactory/sim build --thornlist=einsteintoolkit.th</tt></p> +<p><tt>./simfactory/sim build --thornlist=../einsteintoolkit.th</tt></p> <p><b>Submit a Simulation:</b>

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[svn:einsteintoolkit] www/ (Rev. 97)
by cjordan＠cct.lsu.edu 23 Mar '10

23 Mar '10

User: cjordan Date: 2010/03/23 04:35 AM Modified: / index.php /about/ index.php /about/members/ join.php /global/ style.css /toolkit/repositories/ index.php Log: fixed noborder table style, updated repository page title File Changes: Directory: / ============ File [modified]: index.php Delta lines: +3 -5 =================================================================== --- index.php 2010-03-22 02:02:10 UTC (rev 96) +++ index.php 2010-03-23 09:35:14 UTC (rev 97) @@ -4,6 +4,7 @@ <p>The Einstein Toolkit Consortium is developing and supporting open software for relativistic astrophysics. Our aim is to provide the core computational tools that can enable new science, broaden our community, facilitate interdisciplinary research and take advantage of emerging petascale computers and advanced cyberinfrastructure.</p> +  <style type="text/css"> /* @@ -29,9 +30,6 @@ </div></div>  +<p>Please read our pages <a href="about">about</a> the Einstein Toolkit, its <a href="about/governance">governance</a>, and how to <a href="info">get started</a> with the toolkit for more information.</p> - - -<p>Please read our pages <a href="about">about</a> the Einstein Toolkit, its <a href="about/governance">governance</a> and how to <a href="info">get started</a> with the toolkit for more information.</p> - -<?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> +<?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> \ No newline at end of file Directory: /about/ ================== File [modified]: index.php Delta lines: +6 -7 =================================================================== --- about/index.php 2010-03-22 02:02:10 UTC (rev 96) +++ about/index.php 2010-03-23 09:35:14 UTC (rev 97) @@ -31,20 +31,19 @@ new researchers and groups to enter this field; training and education for a new generation of researchers.</i></li> </ul> - - -<table border="0"> +<br /> +<table class="noborder"> <tr> -<td valign="top"><p>The Toolkit includes a set of mix-and-match components (or Thorns) that support the development of codes for relativistic astrophysics. A number of full examples provide prototype, production examples of complete astrophysical codes including black hole spacetimes (McLachlan thorns) and relativistic hydrodynamical +<td valign="top" width="50%"><p>The Toolkit includes a set of mix-and-match components (or Thorns) that support the development of codes for relativistic astrophysics. A number of full examples provide prototype, production examples of complete astrophysical codes including black hole spacetimes (McLachlan thorns) and relativistic hydrodynamical spacetimes (Avanti thorns).</p> <p>The Einstein Toolkit uses a distributed model with its software modules are either developed, distributed and supported by the <a href="developers/">core maintainers</a> team, or by individual groups. Where modules are provided by external groups, we provide quality control for modules for inclusion in the toolkit and help coordinate support.</p> </td> -<td><a href="ETCode.png"><img width="250" src="ETCode.png"></img></a></td></tr> +<td><a href="ETCode.png"><img width="300" src="ETCode.png"></img></a></td></tr> </table> +<br /> +<p>Through this effort we want to catalyze a consortium for the development and support for community infrastucture for relativistic astrophysics. Although currently the toolkit is based on Cactus, in the future we plan for the consortium to support other relevant community codes. In the shorter term we are building on the toolkit and interested in tools that interface with Cactus for initial data, post-processing and visualization.</p> - <p>Through this effort we want to catalyze a consortium for the development and support for community infrastucture for relativistic astrophysics. Although currently the toolkit is based on Cactus, in the future we plan for the consortium to support other relevant community codes. In the shorter term we are building on the toolkit and interested in tools that interface with Cactus for initial data, post-processing and visualization.</p> -  <?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> Directory: /global/ =================== File [modified]: style.css Delta lines: +6 -3 =================================================================== --- global/style.css 2010-03-22 02:02:10 UTC (rev 96) +++ global/style.css 2010-03-23 09:35:14 UTC (rev 97) @@ -42,8 +42,8 @@ margin : 0.25em; } ol, ul, dl { - margin : 0 0 1em 1em; - padding : 0 0 0 1em; + margin : 0 0 1em .2em; + padding : 0 0 0 .8em; } ol li { list-style : decimal; @@ -62,6 +62,9 @@ font-weight : bold; text-align : center; } +table.noborder td{ + border : none; +} caption { margin-bottom : 0.5em; text-align : center; @@ -87,7 +90,7 @@ } ul.subnav { margin-top : 0; - margin-bottom : 5px; + margin-bottom : 5px; font-size : 0.85em; } .small { Directory: /about/members/ ========================== File [modified]: join.php Delta lines: +15 -15 =================================================================== --- about/members/join.php 2010-03-22 02:02:10 UTC (rev 96) +++ about/members/join.php 2010-03-23 09:35:14 UTC (rev 97) @@ -3,36 +3,36 @@ <p>Please fill out the following information to register as a user of the Einstein Toolkit and a member of our consortium. </p> -<form name="register" action="send-registration" method="post"> -<table> +<form name="register" action="send-registration" method="post"><table> <tr> <td>Name: </td> -<td><input type="text" name="name" /></td> + <td><input type="text" name="name" /></td> </tr> <tr> -<td>Email: </td> -<td><input type="text" name="email" /></td> + <td>Email: </td> + <td><input type="text" name="email" /></td> </tr> <tr> -<td>Institution: </td> -<td><input type="text" name="institution" /></td> + <td>Institution: </td> + <td><input type="text" name="institution" /></td> </tr> <tr> -<td>Add me to the users mail list?</td> -<td><input type="radio" name="list" value="yes" checked /> yes -<input type="radio" name="list" value="no" /> no</td> + <td>Add me to the users mail list?</td> + <td> + <input type="radio" name="list" value="yes" checked /> yes + <input type="radio" name="list" value="no" /> no + </td> </tr> <tr> -<td></td> -<td><input type="submit" value="Submit" /></td> + <td></td> + <td><input type="submit" value="Submit" /></td> </tr> -</table> -</form> +</table></form> <p>The Einstein Toolkit is freely available under an open source license. However, we kindly request that users:</p> <ol> -<li> Acknowledge use of the Einstein Toolkit in publications and presentations following the <a href="#citation">Einstein Toolkit citation guidelines</a>.</li> +<li> Acknowledge use of the Einstein Toolkit in publications and presentations following the Einstein Toolkit citation guidelines.</li> <li> Report to the Einstein Toolkit Maintainers any identified bugs or patches to the Einstein Toolkit.</li> </ol> Directory: /toolkit/repositories/ ================================= File [modified]: index.php Delta lines: +2 -5 =================================================================== --- toolkit/repositories/index.php 2010-03-22 02:02:10 UTC (rev 96) +++ toolkit/repositories/index.php 2010-03-23 09:35:14 UTC (rev 97) @@ -1,4 +1,4 @@ -<?php $title='Content'; +<?php $title='Repositories'; include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> <p>This page describes the software and tools available for download from our central SVN repository. Everything in the repository is open and can be freely downloaded. @@ -18,8 +18,5 @@ <dt><b>Tools</b> (<a href="https://svn.einsteintoolkit.org/www">https://svn.einsteintoolkit.org/www/</a>)</dt> <dd>Currently this contains just the scripts under development for archive simulation data along with descriptive metadata using PetaShare. </dd> </dl> - - - -<?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> +<?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> \ No newline at end of file

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[svn:einsteintoolkit] thornlists/ (Rev. 7)
by schnetter＠cct.lsu.edu 22 Mar '10

22 Mar '10

User: eschnett Date: 2010/03/22 12:28 PM Modified: / einsteintoolkit.th Log: Use ExternalLibraries for most external libraries. ExternalLibraries have been modified to use the system libraries (if they exist) instead of building the library. File Changes: Directory: / ============ File [modified]: einsteintoolkit.th Delta lines: +7 -8 =================================================================== --- einsteintoolkit.th 2010-03-22 13:53:05 UTC (rev 6) +++ einsteintoolkit.th 2010-03-22 17:28:09 UTC (rev 7) @@ -42,11 +42,6 @@ CactusElliptic/EllBase -CactusExternal/BLAS -CactusExternal/GSL -CactusExternal/HDF5 -CactusExternal/LAPACK -#CactusExternal/LORENE using ExternalLibraries instead CactusExternal/jpeg6b CactusIO/IOJpeg @@ -79,7 +74,11 @@ CactusEOS/EOSG_IdealFluid CactusEOS/EOSG_Polytrope -ExternalLibraries/LORENE # could also use CactusExternal instead +ExternalLibraries/BLAS +ExternalLibraries/GSL +ExternalLibraries/HDF5 +ExternalLibraries/LAPACK +ExternalLibraries/LORENE TAT/Slab TAT/SlabTest @@ -127,8 +126,8 @@ # For Kranc (required e.g. by McLachlan) !REPOSITORY_TYPE git -!REPOSITORY_LOCATION git://carpetcode.dyndns.org/kranc.git -!REPOSITORY_NAME kranc/Auxiliary/Cactus +!REPOSITORY_LOCATION http://github.com/ianhinder/Kranc.git +!REPOSITORY_NAME Kranc/Auxiliary/Cactus KrancNumericalTools/GenericFD

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[svn:einsteintoolkit] thornlists/ (Rev. 6)
by knarf＠cct.lsu.edu 22 Mar '10

22 Mar '10

User: knarf Date: 2010/03/22 08:53 AM Removed: / bla Log: test File Changes: Directory: / ============ File [removed]: bla Delta lines: +0 -0 ===================================================================

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[svn:einsteintoolkit] thornlists/ (Rev. 5)
by knarf＠cct.lsu.edu 22 Mar '10

22 Mar '10

User: knarf Date: 2010/03/22 08:52 AM Added: / bla Log: test File Changes: Directory: / ============ File [added]: bla Delta lines: +0 -0 ===================================================================

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[svn:einsteintoolkit] thornlists/ (Rev. 4)
by knarf＠cct.lsu.edu 22 Mar '10

22 Mar '10

User: knarf Date: 2010/03/22 08:20 AM Removed: / bla Log: test File Changes: Directory: / ============ File [removed]: bla Delta lines: +0 -0 ===================================================================

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[svn:einsteintoolkit] thornlists/ (Rev. 3)
by knarf＠cct.lsu.edu 22 Mar '10

22 Mar '10

User: knarf Date: 2010/03/22 08:19 AM Added: / bla Log: test File Changes: Directory: / ============ File [added]: bla Delta lines: +0 -0 ===================================================================

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[svn:einsteintoolkit] www/codes/ (Rev. 96)
by gallen＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: gallen Date: 2010/03/21 09:02 PM Removed: /codes/ Log: don't need this anymore

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[svn:einsteintoolkit] www/ (Rev. 95)
by gallen＠cct.lsu.edu 21 Mar '10

21 Mar '10

User: gallen Date: 2010/03/21 08:59 PM Modified: / credits.php /about/ index.php /info/documentation/ index.php, request.php /info/resources/ index.php /toolkit/ index.php Log: updates File Changes: Directory: / ============ File [modified]: credits.php Delta lines: +51 -0 =================================================================== --- credits.php 2010-03-22 01:22:56 UTC (rev 94) +++ credits.php 2010-03-22 01:59:46 UTC (rev 95) @@ -2,6 +2,57 @@ include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> <p> +Many people have contributed to the software development of the Einstein Toolkit. This list is not complete, if you spot missing names please email the <a href="mailto:maintainers@einsteintoolkit.org">toolkit maintainers</a>. +</p> + +<ul> + <li>Miguel Alcubierre</li> + <li>Gabrielle Allen</li> +<li> Marcus Ansorg</li> +<li>Luca Baiotti</li> + <li>Eloisa Bentivegna</li> +<li>Sebastiano Bernuzzi</li> +<li>Tanja Bode</li> + <li>Steven Brandt</li> +<li>Giovanni Corvino</li> +<li>Roberto De Pietri</li> + <li>Peter Diener</li> +<li>Harry Dimmelmeier</li> +<li>Yaakoub El Khamra</li> +<li>Tony Font</li> +<li>Joachim Frieben</li> +<li>Bruno Giacomazzo</li> + <li>Tom Goodale</li> +<li>Carsten Gundlach</li> + <li>Roland Haas</li> +<li>Ian Hawke</li> +<li>Scott Hawley</li> + <li>Ian Hinder</li> +<li>Thorsten Kellermann</li> +<li>Gerd Lanfermann</li> + <li>Frank LÃ¶ffler</li> +<li>Joan Masso</li> +<li>Mark Miller</li> +<li>Pedro Montero</li> + <li>Christian Ott</li> + <li>Ravi Paruchuri</li> +<li>Denis Pollney</li> +<li>Thomas Radke</li> +<li>Luciano Rezzolla</li> + <li>David Rideout</li> +<li>Matei Ripeanu</li> + <li>Erik Schnetter</li> +<li>Edward Seidel</li> +<li>John Shalf</li> +<li>Nikolaos Stergioulas</li> +<li>Ryoji Takahashi</li> +<li>Jonathan Thornburg</li> +<li>Aaryn Tonita</li> +<li>Paul Walker</li> +</ul> + + +<p> The einsteintoolkit.org website was created and launched by <a href="http://colbyjordan.com">Colby Jordan</a>. The project's Einstein logo was designed and drawn by Rayyan Tash. </p> Directory: /about/ ================== File [modified]: index.php Delta lines: +4 -2 =================================================================== --- about/index.php 2010-03-22 01:22:56 UTC (rev 94) +++ about/index.php 2010-03-22 01:59:46 UTC (rev 95) @@ -6,9 +6,9 @@ accretion onto compact objects, supernovae core collapse and gamma-ray bursts.</p> <p>The Einstein Toolkit builds on numerous software efforts in the numerical relativity - community including CactusEinstein, Whisky, and Carpet. The Einstein Toolkit uses + community including CactusEinstein, <a href="http://www.whiskycode.org/" class="nostyle">Whisky</a>, and <a href="http://www.carpetcode.org" class="nostyle">Carpet</a>. The Einstein Toolkit currently uses the <a href="http://www.cactuscode.org">Cactus Framework</a> as the underlying computational infrastructure - that provides large-scale parallelization, general computational components, and a model for collaborative, portable code development. </p> + that provides large-scale parallelization, general computational components, and a model for collaborative, portable code development. </p> <p> <b>Guiding principles for the design and implementation of the toolkit include:</b></p> @@ -43,6 +43,8 @@ </table> + <p>Through this effort we want to catalyze a consortium for the development and support for community infrastucture for relativistic astrophysics. Although currently the toolkit is based on Cactus, in the future we plan for the consortium to support other relevant community codes. In the shorter term we are building on the toolkit and interested in tools that interface with Cactus for initial data, post-processing and visualization.</p> +  <?php include_once($_SERVER['DOCUMENT_ROOT'].'/global/footer.php');?> Directory: /info/documentation/ =============================== File [modified]: index.php Delta lines: +11 -4 =================================================================== --- info/documentation/index.php 2010-03-22 01:22:56 UTC (rev 94) +++ info/documentation/index.php 2010-03-22 01:59:46 UTC (rev 95) @@ -17,9 +17,9 @@ <p>This section provides a simple guide for compiling and running an example parameter file for the Einstein Toolkit.</p> -<p>One complexities of high performance computing is the heterogeneous environments presented by different resources with different core software installations and local setups. For example, Einstein Toolkit codes necessitate compiling with MPI and then running the resulting application in a batch queue. As much as possible of this complexity is hidden in Cactus and accompanying tools such as the Simulation Factory.</p> +<p>One complexity of high performance computing is the heterogeneous environments presented by different resources with different core software installations and local setups. For example, Einstein Toolkit codes necessitate compiling with MPI and then running the resulting application in a batch queue. As much as possible of this complexity is hidden in Cactus and accompanying tools such as the Simulation Factory.</p> -<p>This worked example assumes the use of the NSF TeraGrid resource Queen Bee.</p> +<p>This worked example assumes that you are using the NSF TeraGrid resource <a href="http://www.loni.org/systems/system.php?system=QueenBee">Queen Bee</a>. If you don't have an existing account on Queen Bee you can <a href="request.php">request an account</a> to use for these examples.</p> <p><b>Preparations:</b></p> @@ -55,8 +55,15 @@ <p><tt>mv simfactory/udb.example.pm simfactory/udb.pm</tt> <br><tt>vi simfactory/udb.pm</tt></p> -<p>Edit udb.pm and replace LOGIN_NAME with your username on Queen Bee.</p> +<p>Edit udb.pm and </p> +<ul> +<li>replace YOUR_LOGIN with your username on Queen Bee +<li>YOUR(a)EMAIL.ADDRESS with your usual email address +<li>YOUR_ALLOCATION with your project allocation on Queen Bee +</ul> </p> +<p>NOTE: At the moment you also need to replace the line with sourcebasedir for Queen Bee with /home/<username> unless you have a directory in the /project space. We are working on improving this. </p> + <p><b>Download Einstein Toolkit Examples:</b></p> <p>From the Cactus directory,</p> @@ -71,7 +78,7 @@ <p>Create a batch queue script and submit it to queue the simulation:</p> -<p><tt>./simfactory/sim create-submit static_TOV --parfile=EinsteinExamples/par/static_TOV.par --procs=32 --walltime=8:0:0</tt></p> +<p><tt>./simfactory/sim create-submit static_tov --parfile=par/static_tov.par --procs=32 --walltime=8:0:0</tt></p> <p>To check the status of the simulation, use</p> File [modified]: request.php Delta lines: +1 -1 =================================================================== --- info/documentation/request.php 2010-03-22 01:22:56 UTC (rev 94) +++ info/documentation/request.php 2010-03-22 01:59:46 UTC (rev 95) @@ -1,7 +1,7 @@ <?php $title='Request Test Account'; include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> -<p>Please fill out the following information to request a test account for the Einstein Toolkit.</p> +<p>Please fill out the following information to request a test account for the Einstein Toolkit. These accounts will take one or two days to set up.</p> <form name="request" action="send-account" method="post"> <table> Directory: /info/resources/ =========================== File [modified]: index.php Delta lines: +1 -2 =================================================================== --- info/resources/index.php 2010-03-22 01:22:56 UTC (rev 94) +++ info/resources/index.php 2010-03-22 01:59:46 UTC (rev 95) @@ -1,7 +1,6 @@ -<?php $title='Resources'; +<?php $title='Requirements'; include_once($_SERVER['DOCUMENT_ROOT'].'/global/header.php');?> -<h3>Requirements</h3> <p> The Einstein Toolkit has been tested on many different large-scale production resources and can be compiled and run on just about any laptop, workstation, cluster or supercomputer with standard HPC software installed. The main requirements are: </p> Directory: /toolkit/ ==================== File [modified]: index.php Delta lines: +1 -1 =================================================================== --- toolkit/index.php 2010-03-22 01:22:56 UTC (rev 94) +++ toolkit/index.php 2010-03-22 01:59:46 UTC (rev 95) @@ -6,7 +6,7 @@ <p>The pre-release of the Einstein Toolkit consists of the Cactus thorns contained on this thornlist:</p> <ul> - <li><a href="https://svn.cct.lsu.edu/repos/users/knarf/CIGR_tmp/trunk/thornlists/cigr.th">Einstein Toolkit Thornlist</a>. </li> + <li><a href="https://svn.einsteintoolkit.org/cactus/thornlists/einsteintoolkit.th">Einstein Toolkit Thornlist</a>. </li> </ul> <p>Verification procedures for the Einstein Toolkit are still being discussed.

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Commits March 2010