February 2025 - Trac - lists.einsteintoolkit.org

#2857: Compiling CarpetX with OpenPMD
by Roland Haas 25 Feb '25

25 Feb '25

#2857: Compiling CarpetX with OpenPMD Reporter: Alejandra Gonzalez Status: submitted Milestone: ET_2024_11 Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Note that when updating the `OptionList` you often have to build \(once\) with `--reconfig` to make sure setting are correctly or even \(dependency tracking gets fuzzy with options\) have to do a ``` touch arrangements/ExternalLibraries/openPMD/*.ccl arrangements/ExternalLibraries/openPMD/src/* ``` to trigger options being correctly transferred to `make.OPENPMD_API.defn`. ‌ -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2857/compiling-carpetx…

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#2857: Compiling CarpetX with OpenPMD
by Roland Haas 25 Feb '25

25 Feb '25

#2857: Compiling CarpetX with OpenPMD Reporter: Alejandra Gonzalez Status: submitted Milestone: ET_2024_11 Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Hmm, could you provide the content of the files * `configs/sim/bindings/Configuration/Capabilities/make.OPENPMD_API.defn` * `configs/sim/bindings/Configuration/Capabilities/make.CARPETX.defn` ? Those contain the values used by the build system. The first one to see what OpenPMD recorded and the second one to make sure CarpetX is actually using OpenPMD’s settings. Also if you could do a: ``` ./simfactory/bin/sim build -j1 ``` which will fail and then another build run: ``` VERBOSE=yes ./simfactory/bin/sim build -j1 &>make.log ``` then attach the file `make.log` to this ticket \(the “Attach file” option is hidden behind the “More v” button near the top right of the screen\), that would help. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2857/compiling-carpetx…

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#2857: Compiling CarpetX with OpenPMD
by Alejandra Gonzalez 25 Feb '25

25 Feb '25

#2857: Compiling CarpetX with OpenPMD Reporter: Alejandra Gonzalez Status: submitted Milestone: ET_2024_11 Version: Type: bug Priority: major Component: EinsteinToolkit thorn Dear ETK developers, While attempting to compile CarpetX with the most recent version of ETK, everything seemed to go smoothly except when it tries to build the external library openPMD. Apparently the library tries to fetch a github repository during compilation, e.g. nlohmann\_json, which is not possible to do on the cluster I'm trying to do it since it has no connection to the outside. Naturally, I downloaded the repository locally, sent it to my cluster manually and set the path on my cluster optionlist file `simfactory/mdb/optionlists/marenostrum5.cfg`: openPMD\_json\_src = path/to/my/local/repo However during compilation it still attempts to clone the repo and I still fail to find the correct place to set this path. For this reason I compiled OpenPMD separately on my system and added the corresponding paths: ``` OPENPMD_DIR = /home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build OPENPMD_LIB_DIRS = /home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build/lib OPENPMD_INC_DIRS = /home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build/openPMD-api/include openPMD_SOURCE_DIR = /home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build/openPMD-api ``` to simfactory/mdb/optionlists/marenostrum5.cfg which I see during compilation that simfactory recognizes them: ``` Setting OPENPMD_DIR to '/home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build' Setting OPENPMD_LIB_DIRS to '/home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build/lib' Setting OPENPMD_INC_DIRS to '/home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build/openPMD-api/include' Setting openPMD_SOURCE_DIR to '/home/uib/uib416720/ETK2024/CarpetX/openPMD-api_build/openPMD-api' End of options from '/home/uib/uib416720/ETK2024/CarpetX/Cactus/configs/sim_cx/OptionList'. ``` Unfortunately I still get an error: ``` COMPILING CarpetX/CarpetX/src/io_openpmd.cxx /gpfs/home/uib/uib416720/ETK2024/CarpetX/Cactus/configs/sim_cx/build/CarpetX/io_openpmd.cxx:17:10: fatal error: openPMD/openPMD.hpp: No such file or directory 17 | #include <openPMD/openPMD.hpp> | ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. make[3]: *** [/gpfs/home/uib/uib416720/ETK2024/CarpetX/Cactus/configs/sim_cx/config-data/make.config.rules:318: io_openpmd.cxx.o] Error 1 make[2]: *** [/gpfs/home/uib/uib416720/ETK2024/CarpetX/Cactus/lib/make/make.thornlib:113: make.checked] Error 2 make[1]: *** [/gpfs/home/uib/uib416720/ETK2024/CarpetX/Cactus/lib/make/make.configuration:179: /gpfs/home/uib/uib416720/ETK2024/CarpetX/Cactus/configs/sim_cx/lib/libthorn_CarpetX.a] Error 2 ``` Even though the paths I passed are correct and the hpp file does exist there. I did a small test script where I added `#include <openPMD/openPMD.hpp>` and worked without problems, which makes me guess it’s an issue within simfactory or CarpetX itself. I would really appreciate some guidance or suggestions about what I could do. The system is MareNostrum 5, which is relatively new. Thanks in advance. Sincerely, Alejandra -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2857/compiling-carpetx…

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#2845: support (again) filesystem in std::experimental in Silo output
by Roland Haas 21 Feb '25

21 Feb '25

#2845: support (again) filesystem in std::experimental in Silo output Reporter: Roland Haas Status: open Milestone: Version: Type: enhancement Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Unless objected I will apply this after 2025-03-07 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2845/support-again-fil…

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#2172: Test "Binary black hole GW150914" example
by Roland Haas 21 Feb '25

21 Feb '25

#2172: Test "Binary black hole GW150914" example Reporter: Roland Haas Status: open Milestone: ET_2024_11 Version: development version Type: task Priority: major Component: EinsteinToolkit website Comment (by Roland Haas): @{557058:f7fd5133-6eee-4385-a5e5-3e03342a0b24} could you update the web-page and the downloads section, please? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2172/test-binary-black…

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#2820: NewRadX boundary condition conflicts with symmetry condition
by Roland Haas 21 Feb '25

21 Feb '25

#2820: NewRadX boundary condition conflicts with symmetry condition Reporter: Roland Haas Status: resolved Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): status: resolved (was new) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2820/newradx-boundary-…

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#2820: NewRadX boundary condition conflicts with symmetry condition
by Roland Haas 21 Feb '25

21 Feb '25

#2820: NewRadX boundary condition conflicts with symmetry condition Reporter: Roland Haas Status: new Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Applied as git hash [1015ac13](https://github.com/einsteintoolkit/CarpetX/commits/1015ac13184b87… "Merge pull request #300 from chcheng3/main" of [CarpetX](https://github.com/einsteintoolkit/CarpetX) Applied as git hash [5b312c55](https://github.com/einsteintoolkit/SpacetimeX/commits/5b312c55bc7… "Merge pull request #39 from chcheng3/main" of [SpacetimeX](https://github.com/einsteintoolkit/SpacetimeX) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2820/newradx-boundary-…

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#2856: CarpetX: CarpetX errors out when it cycles time levels if those levels are not valid everywhere
by Steven R. Brandt 20 Feb '25

20 Feb '25

#2856: CarpetX: CarpetX errors out when it cycles time levels if those levels are not valid everywhere Reporter: Steven R. Brandt Status: new Milestone: ET_2025_05 Version: Type: bug Priority: major Component: Other The issue is that presync-only does not work because CarpetX errors out when it cycles time levels if those levels are not valid everywhere. The PR adds a check to see whether presync-only is active and calls Sync if it is needed. PR: [https://github.com/EinsteinToolkit/CarpetX/pull/328](https://github.com/Ein… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2856/carpetx-carpetx-e…

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#2839: look for multiple flavors of hdf5 library names
by Roland Haas 20 Feb '25

20 Feb '25

#2839: look for multiple flavors of hdf5 library names Reporter: Roland Haas Status: open Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Unless objected I will apply this after 2025-03-06 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2839/look-for-multiple…

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#2855: NoiseX: Improve noise generation in CarpetX
by Lucas Timotheo Sanches 20 Feb '25

20 Feb '25

#2855: NoiseX: Improve noise generation in CarpetX Reporter: Lucas Timotheo Sanches Status: new Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Changes (by Lucas Timotheo Sanches): Noise generation in `ADMBaseX` is not reproducible and not easily controlled. This moves noise generation to a separate thorn and makes and improves noise reproducibility by allowing users to use fixed noise engines with fixed noise seeds. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2855/noisex-improve-no…

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#2855: NoiseX: Improve noise generation in CarpetX
by Lucas Timotheo Sanches 20 Feb '25

20 Feb '25

#2855: NoiseX: Improve noise generation in CarpetX Reporter: Lucas Timotheo Sanches Status: new Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Comment (by Lucas Timotheo Sanches): Please review -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2855/noisex-improve-no…

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#2855: NoiseX: Improve noise generation in CarpetX
by Lucas Timotheo Sanches 20 Feb '25

20 Feb '25

#2855: NoiseX: Improve noise generation in CarpetX Reporter: Lucas Timotheo Sanches Status: new Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Comment (by Lucas Timotheo Sanches): Pull request is here: [https://github.com/EinsteinToolkit/CarpetX/pull/334](https://github.com/Ein… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2855/noisex-improve-no…

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#2855: NoiseX: Improve noise generation in CarpetX
by Lucas Timotheo Sanches 20 Feb '25

20 Feb '25

#2855: NoiseX: Improve noise generation in CarpetX Reporter: Lucas Timotheo Sanches Status: new Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Noise generation in `ADMBaseX` is not reproducible and not easily controlled. This moves noise generation to a separate thorn and makes the type of noise and improves noise reproducibility by allowing users to use fixed noise engines with fixed noise seeds. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2855/noisex-improve-no…

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#2776: zlib: also use pkg-config when searching for installed version
by Roland Haas 20 Feb '25

20 Feb '25

#2776: zlib: also use pkg-config when searching for installed version Reporter: Roland Haas Status: open Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Comment (by Roland Haas): Unless objected I will apply after 2025-02-20 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2776/zlib-also-use-pkg…

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#2840: supplement rather than supercede auto-guessed data with gsl-config
by Roland Haas 19 Feb '25

19 Feb '25

#2840: supplement rather than supercede auto-guessed data with gsl-config Reporter: Roland Haas Status: open Milestone: Version: Type: bug Priority: minor Component: EinsteinToolkit thorn Comment (by Roland Haas): Unless objected I will apply after 2025-03-05 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2840/supplement-rather…

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#2838: supplement pkg-config information by h5cc
by Roland Haas 19 Feb '25

19 Feb '25

#2838: supplement pkg-config information by h5cc Reporter: Roland Haas Status: open Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Unless objected I will apply this after 2025-03-05. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2838/supplement-pkg-co…

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#2843: update FFTW3 to 3.3.10
by Roland Haas 18 Feb '25

18 Feb '25

#2843: update FFTW3 to 3.3.10 Reporter: Roland Haas Status: resolved Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Changes (by Roland Haas): status: resolved (was open) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2843/update-fftw3-to-3…

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#2843: update FFTW3 to 3.3.10
by Roland Haas 18 Feb '25

18 Feb '25

#2843: update FFTW3 to 3.3.10 Reporter: Roland Haas Status: open Milestone: Version: Type: enhancement Priority: minor Component: EinsteinToolkit thorn Comment (by Roland Haas): Applied as git hash [6567c52](https://github.com/EinsteinToolkit/ExternalLibraries-FFTW3/commits… "FFTW3: update to 3.3.10" of [ExternalLibraries-FFTW3](https://github.com/EinsteinToolkit/ExternalLibrari… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2843/update-fftw3-to-3…

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#2852: No error for multiple definitions of an interface group.
by Roland Haas 13 Feb '25

13 Feb '25

#2852: No error for multiple definitions of an interface group. Reporter: Steven R. Brandt Status: resolved Milestone: ET_2025_05 Version: Type: bug Priority: major Component: Cactus Changes (by Roland Haas): status: resolved (was open) Comment (by Roland Haas): Thank you! Applied as git hash a31f3ea5 "Cactus: provide an error message for multiple definitions of an interface group or variable" of cactus -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2852/no-error-for-mult…

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#2851: remove explicit declaration of Cray pointer variables
by Roland Haas 13 Feb '25

13 Feb '25

#2851: remove explicit declaration of Cray pointer variables Reporter: Roland Haas Status: open Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Applied to Exact as git hash [ccc84b69](https://bitbucket.org/einsteintoolkit/einsteininitialdata/commits… "Exact: remove explicit declaration of Cray pointer variables" of [einsteininitialdata](https://bitbucket.org/einsteintoolkit/einsteininitiald… Pending review for Canuda. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2851/remove-explicit-d…

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#2851: remove explicit declaration of Cray pointer variables
by Roland Haas 13 Feb '25

13 Feb '25

#2851: remove explicit declaration of Cray pointer variables Reporter: Roland Haas Status: open Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): @{557058:56049c54-f8c2-4b6c-9b88-ab697c967495} said in today’s ET all: “looks good”. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2851/remove-explicit-d…

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#2854: DNSData does not declare dependency on SGRID
by Roland Haas 13 Feb '25

13 Feb '25

#2854: DNSData does not declare dependency on SGRID Reporter: Roland Haas Status: open Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): status: open (was new) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2854/dnsdata-does-not-…

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#2854: DNSData does not declare dependency on SGRID
by Roland Haas 13 Feb '25

13 Feb '25

#2854: DNSData does not declare dependency on SGRID Reporter: Roland Haas Status: new Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): responsible: [] (was ) assignee: Michal Pirog (was ) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2854/dnsdata-does-not-…

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#2854: DNSData does not declare dependency on SGRID
by Roland Haas 13 Feb '25

13 Feb '25

#2854: DNSData does not declare dependency on SGRID Reporter: Roland Haas Status: new Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Please review. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2854/dnsdata-does-not-…

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#2854: DNSData does not declare dependency on SGRID
by Roland Haas 13 Feb '25

13 Feb '25

#2854: DNSData does not declare dependency on SGRID Reporter: Roland Haas Status: new Milestone: Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Pull request is here: [https://github.com/wofti/CactusSgrid/pull/2](https://github.com/wofti/Cactu… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2854/dnsdata-does-not-…

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