Trac March 2011

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[Einstein Toolkit] #340: Improve error message when parameter file is not found
by Einstein Toolkit 14 Mar '11

14 Mar '11

#340: Improve error message when parameter file is not found ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- I specified a wrong path "par/recover.par" for a parameter file, and Simfactory didn't find the parameter file. Simfactory's error message was: Error: specified parfile /project/numrel/eschnett/philip/EinsteinToolkit- hg/simfactory/etc/parfiles/par/recover.par does not exist or is not readable This is confusing, since the parameter file was not in the "parfiles" directory of Simfactory. Simfactory should list all the places where it looked for a parameter file, and should also output what the user actually specified. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/340> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #291: new python simfactory does not overtake the "-roe" option of Cactus is used with submit
by Einstein Toolkit 14 Mar '11

14 Mar '11

#291: new python simfactory does not overtake the "-roe" option of Cactus is used with submit ----------------------------------------------+----------------------------- Reporter: alexander.beck-ratzka@… | Owner: mthomas Type: defect | Status: new Priority: minor | Milestone: ET_2010_11 Component: SimFactory | Version: ET_2010_11 Keywords: | ----------------------------------------------+----------------------------- I my template for RunScript, I have the line: [snip] time ${MPIDIR}/bin/mpirun -v --mca btl openib,self --mca mpi_leave_pinned 0 -np @NUM_PROCS@ -npernode @(@PPN_USED@/@NUM_THREADS@)@ @EXECUTABLE@ -roe -L 3 @PARFILE@ [snip] The option "-roe" will force Cactus to create a log for all processors, and not only for PE0. The Runscript created by this template only contains the line time ${MPIDIR}/bin/mpirun -v --mca btl openib,self --mca mpi_leave_pinned 0 -np 8 -npernode 4 /lustre/AEI/alibeck/s imulations/cactus_test-luca-no-openmp/SIMFACTORY/exe/cactus_test-luca-no- openmp -L 3 /lustre/AEI/alibeck/simulation s/cactus_test-luca-no- openmp/output-0003/TOVMHD_CarpetRegrid2_PPM_HLLE_BSSNMoL.par so the option -roe is missing. I have used simfactory submit (not create-submit) to start the job. If I use "create-submit" the -roe flag is respected. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/291> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #122: Code documentation
by Einstein Toolkit 12 Mar '11

12 Mar '11

#122: Code documentation -------------------------+-------------------------------------------------- Reporter: hinder | Owner: mthomas Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- In order to help new developers understand the code, the following would be useful: * Provide some sort of high-level overview of the internal components of simfactory. This could be in the form of a class diagram with annotations indicating what each class does, and its relationship to the other classes (inheritence/object membership etc). There must be tools for doing this for python and generating doxygen-type output. * Within the source code, provide at least a one-line comment for each function indicating what it does. * Ensure that the readmes etc in the repository are up-to-date, or at least remove any out-of-date information. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/122> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #325: sim setup issues
by Einstein Toolkit 11 Mar '11

11 Mar '11

#325: sim setup issues -----------------------+---------------------------------------------------- Reporter: anonymous | Type: defect Status: new | Priority: major Milestone: | Component: Other Version: | Keywords: -----------------------+---------------------------------------------------- I have started with a fresh checkout of SimFactory and am using 'sim setup' to setup my local machine. In doing so, I have encountered a couple of issues: 1. If I choose to "Update keys for a specific machine", then it continually asks me for a key name and value. It is not clear how to end this process. I guessed that just pressing enter when asked for a key name would work and it seems to have. It would be good to make this clearer, though. 2. After updating keys for a specific machine, I am prompted to update keys for a specific machine again. If I enter "yes", I am given the Continue prompt a second time and must enter "yes" again. 3. After the above process, the prompt to Save contents is shown twice. 4. The setup of the new local machine entry is automated, but not sufficient to actually use. For example, the basedir entry points to /home/@USER/simulations which doesn't necessarily exist (on OSX, for example). Maybe there should be either a message saying to edit the new machine file or an interactive setup process? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/325> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #337: list-simulations should take a simulation name as argument
by Einstein Toolkit 11 Mar '11

11 Mar '11

#337: list-simulations should take a simulation name as argument -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- list-simulations should take simulations names as arguments, and then only output information about these simulations. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/337> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #315: SimRestart instance has no attribute 'SimulationDir'
by Einstein Toolkit 11 Mar '11

11 Mar '11

#315: SimRestart instance has no attribute 'SimulationDir' ------------------------+--------------------------------------------------- Reporter: hinder | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- Using r1234, I cannot clean up a simulation on damiana. I get the error: AttributeError: SimRestart instance has no attribute 'SimulationDir' I thought that these things should be picked up by pychecker? [ianhin@login-damiana llama]$ sim2 cleanup --machine datura bbhllama_22a Info: Simfactory command: simfactory2/bin/../lib/sim.py "cleanup" "-- machine" "datura" "bbhllama_22a" Info: Version exported The Simulation Factory: Manage Cactus simulations Info: defs: /home/ianhin/Cactus/llama/simfactory2/etc/defs.ini Info: defs.local: /home/ianhin/Cactus/llama/simfactory2/etc/defs.local.ini Info: Cactus Directory: /home/ianhin/Cactus/llama Info: simenv.COMMAND: cleanup Info: Executing command: cleanup Info: Simulation name: bbhllama_22a Traceback (most recent call last): File "simfactory2/bin/../lib/sim.py", line 141, in ? main() File "simfactory2/bin/../lib/sim.py", line 138, in main CommandDispatch() File "simfactory2/bin/../lib/sim.py", line 105, in CommandDispatch module.main() File "/home/ianhin/Cactus/llama/simfactory2/lib/sim-manage.py", line 335, in main CommandDispatch() File "/home/ianhin/Cactus/llama/simfactory2/lib/sim-manage.py", line 314, in CommandDispatch exec("command_%s()" % command) File "<string>", line 1, in ? File "/home/ianhin/Cactus/llama/simfactory2/lib/sim-manage.py", line 70, in command_cleanup rids = restartlib.GetRestartIds(restart) File "/home/ianhin/Cactus/llama/simfactory2/lib/restartlib.py", line 380, in GetRestartIds simulationdir = restart.SimulationDir AttributeError: SimRestart instance has no attribute 'SimulationDir' -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/315> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #335: Error when building HDF5 utilities - No rule to make target h5fc
by Einstein Toolkit 10 Mar '11

10 Mar '11

#335: Error when building HDF5 utilities - No rule to make target h5fc --------------------+------------------------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Other | Version: Keywords: HDF5 | --------------------+------------------------------------------------------- When compiling Cactus on Mac OS using HDF5 provided by fink, compilation of the Cactus executable succeeds, but one of the utilities fails to build. Building utilities for sim2 Copying gif2h5 from /sw/bin/gif2h5 to /Users/ian/Cactus/llama/exe/sim2 Copying h52gif from /sw/bin/h52gif to /Users/ian/Cactus/llama/exe/sim2 Copying h5c++ from /sw/bin/h5c++ to /Users/ian/Cactus/llama/exe/sim2 Copying h5cc from /sw/bin/h5cc to /Users/ian/Cactus/llama/exe/sim2 Copying h5copy from /sw/bin/h5copy to /Users/ian/Cactus/llama/exe/sim2 Copying h5debug from /sw/bin/h5debug to /Users/ian/Cactus/llama/exe/sim2 Copying h5diff from /sw/bin/h5diff to /Users/ian/Cactus/llama/exe/sim2 make[1]: *** No rule to make target `/Users/ian/Cactus/llama/exe/sim2/h5fc', needed by `utils'. Stop. make[1]: *** Waiting for unfinished jobs.... Copying h5dump from /sw/bin/h5dump to /Users/ian/Cactus/llama/exe/sim2 make: *** [sim2-utils] Error 2 There is no h5fc installed on the system. I have not yet figured out why it would not be installed by fink. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/335> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #314: File simulation-1298790275.96 should be in SIMFACTORY directory
by Einstein Toolkit 09 Mar '11

09 Mar '11

#314: File simulation-1298790275.96 should be in SIMFACTORY directory ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- A simulation of mine contains a file simulation-1298790275.96. This file should be hidden int he SIMFACTORY directory. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/314> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #321: show-output is broken
by Einstein Toolkit 09 Mar '11

09 Mar '11

#321: show-output is broken ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: critical | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- The command show-output is broken on my laptop. Here is the relevant screen output; Info: Simfactory command: ./simfactory/bin/../lib/sim.py "show-output" "empty-redshift-2011.03.02-11.04.47" Info: Version 1238:1242M The Simulation Factory: Manage Cactus simulations Info: defs: /Users/eschnett/EinsteinToolkit-hg/simfactory/etc/defs.ini Info: defs.local: /Users/eschnett/EinsteinToolkit- hg/simfactory/etc/defs.local.ini Info: Cactus Directory: /Users/eschnett/EinsteinToolkit-hg Info: simenv.COMMAND: show-output Info: Executing command: show_output Traceback (most recent call last): File "./simfactory/bin/../lib/sim.py", line 141, in <module> main() File "./simfactory/bin/../lib/sim.py", line 138, in main CommandDispatch() File "./simfactory/bin/../lib/sim.py", line 105, in CommandDispatch module.main() File "/Users/eschnett/EinsteinToolkit-hg/simfactory/lib/sim-manage.py", line 335, in main CommandDispatch() File "/Users/eschnett/EinsteinToolkit-hg/simfactory/lib/sim-manage.py", line 314, in CommandDispatch exec("command_%s()" % command) File "<string>", line 1, in <module> NameError: name 'command_show_output' is not defined -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/321> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #332: Cactus should not interpret environment variables as configuration options
by Einstein Toolkit 09 Mar '11

09 Mar '11

#332: Cactus should not interpret environment variables as configuration options --------------------+------------------------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: Cactus | Version: Keywords: | --------------------+------------------------------------------------------- Currently, if you have the variable HDF5_DIR set in your shell startup file, Cactus will interpret this as a configuration option and will override whatever is set in your optionlist. This behaviour occurs because the "make" utility allows you to specify options on the command line which are then converted into environment variables. This is a method for overriding options on the command line. However, the fact that variables from the user's environment are also overriding the optionlist is very undesirable. It would be good if this could be fixed somehow. This ticket is in response to #100. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/332> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac March 2011