Trac July 2011

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130 discussions

[Einstein Toolkit] #143: ETK "Chandrasekhar" release: HDF5 "BUILD" option failing on MacOSX + openmpi.
by Einstein Toolkit 02 Sep '11

02 Sep '11

#143: ETK "Chandrasekhar" release: HDF5 "BUILD" option failing on MacOSX + openmpi. --------------------------------------+------------------------------------- Reporter: bernard.j.kelly@… | Type: defect Status: new | Priority: major Milestone: ET_2010_11 | Component: Other Version: ET_2010_11 | Keywords: HDF5 openmpi --------------------------------------+------------------------------------- We've recently tried compiling the latest ETK official release ("Chandrasekhar") on our Macbooks. To get a working HDF5 installation compatible with the build, we've selected "HDF5_DIR=BUILD". This fails, however. I'm attaching my user-specified Cactus config. options, as well as the Thornlist used, and the error messages. My machine is running OSX 10.5.8 (Leopard), and the compiler is openmpi [i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)], installed via macports. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/143> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #408: new_thorn.pl doesn't create configuraiton.ccl
by Einstein Toolkit 01 Sep '11

01 Sep '11

#408: new_thorn.pl doesn't create configuraiton.ccl -------------------------+-------------------------------------------------- Reporter: jtao | Owner: Type: enhancement | Status: new Priority: minor | Milestone: ET_2011_05 Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- new_thorn.pl doesn't create configuraiton.ccl -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/408> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #409: thorn libpng
by Einstein Toolkit 01 Sep '11

01 Sep '11

#409: thorn libpng -------------------------+-------------------------------------------------- Reporter: jtao | Owner: Type: enhancement | Status: new Priority: optional | Milestone: ET_2011_11 Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- need a thorn similar to libjpeg for libpng -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/409> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #415: CUCC no optimization option is not set correctly
by Einstein Toolkit 01 Sep '11

01 Sep '11

#415: CUCC no optimization option is not set correctly ----------------------+----------------------------------------------------- Reporter: jtao | Owner: Type: defect | Status: new Priority: critical | Milestone: Component: Other | Version: Keywords: | ----------------------+----------------------------------------------------- CUCC no optimization option is not set correctly. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/415> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #471: GetComponents: Allow !ANON_USER and !ANON_PASS not to be specified in a cvs checkout.
by Einstein Toolkit 31 Aug '11

31 Aug '11

#471: GetComponents: Allow !ANON_USER and !ANON_PASS not to be specified in a cvs checkout. ---------------------------+------------------------------------------------ Reporter: bmundim | Owner: eric9 Type: defect | Status: new Priority: major | Milestone: Component: GetComponents | Version: Keywords: | ---------------------------+------------------------------------------------ I would like to checkout cvs modules from a repository where ssh keys and ssh-agent are used to allow for a passwordless checkout. At the moment GetComponent doesn't seem to handle well this case. For example, once my keys are hold by ssh-agent the following command allows me to checkout cvs_module located at cvs_repo_path on cvsrepo repository: cvs -d :ext:cvsrepo:cvs_repo_path co path_to_module/cvs_module However if I set on the CRL file the following directives: !TARGET = $ARR !TYPE = cvs !URL = :ext:cvsrepo:cvs_repo_path !REPO_PATH = path_to_module/$1 !CHECKOUT = cvs_module I got the following error: Checking out module: cvs_module from repository: :@:ext:cvsrepo:cvs_repo_path into: Cactus/arrangements Executing: cvs -z9 -q -d :@:ext:cvsrepo:cvs_repo_path checkout cvs_module In: Cactus/arrangements cvs checkout: Unknown method (`@') in CVSROOT. cvs [checkout aborted]: Bad CVSROOT: `:@:ext:cvsrepo:cvs_repo_path'. This happens because GetComponents expects the directives !ANON_USER and !ANON_PASS to be specified in a anonymous checkout (as I usually set when I use ssh keys to authenticate my access to a particular repository). However in doing so it prevents a passwordless checkout. The attached patch fix this problem, but maybe the best solution would be to allow the user to specify a promptless !AUTH_URL directive so that "$user:$pass\@" is not included in the repository specification. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/471> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #436: NaNs in the AMR boundary closest to Pi symmetry boundary around 10M of evolution
by Einstein Toolkit 27 Aug '11

27 Aug '11

#436: NaNs in the AMR boundary closest to Pi symmetry boundary around 10M of evolution -----------------------------------+---------------------------------------- Reporter: bmundim | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- The parameter file attached runs smoothly with the ET curie release version. However when I use the current ET development version, NaNs show up in the AMR boundary closest to Pi symmetry boundary around 10M of evolution. This happens for the second finest grid level. I am repeating the experiment without Pi symmetry and I will report on its result shortly. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/436> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #342: Add CCTK_POINTER_SIZE make variable
by Einstein Toolkit 27 Aug '11

27 Aug '11

#342: Add CCTK_POINTER_SIZE make variable -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: flesh | -------------------------+-------------------------------------------------- It is sometimes necessary to know in a thorn's configuration script whether 32 bit or 64 bit code is to be generated. See the discussion in ticket #339. The attached patch adds a CCTK_POINTER_SIZE make variable to make.config.defn which is accessible as a shell variable to configuration scripts. This will be 4 when compiling for 32 bit, and 8 when compiling for 64 bit. I am not very expert in autoconf, so the patch might have to be modified. It seems to work, however. I have not included the generated configure script - this should be generated by the person who commits the final patch. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/342> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #438: Allow a configuration.ccl for the flesh
by Einstein Toolkit 25 Aug '11

25 Aug '11

#438: Allow a configuration.ccl for the flesh ----------------------+----------------------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Other | Version: Keywords: | ----------------------+----------------------------------------------------- The mechanism in Cactus that handles configuration.ccl files currently cannot handle a configuration.ccl for the flesh. The enclosed patch corrects this. This is a prerequisite for moving the MPI configuration code out of the flesh and into a thorn (as we already did for all other external libraries). The flesh will need to know whether MPI is used or not, since MPI needs to be initialized before the parameter file is read. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/438> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #207: Cactus should have an option to store the mpirun command needed to run test cases
by Einstein Toolkit 24 Aug '11

24 Aug '11

#207: Cactus should have an option to store the mpirun command needed to run test cases -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- Cactus should be able to remember from configuration the mpirun command syntax needed to run test cases. This would simplify running test cases, which could then probably even be automated. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/207> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #468: CCTK_GFINDEX3D should check indices when CCTK_DEBUG is defined
by Einstein Toolkit 19 Aug '11

19 Aug '11

#468: CCTK_GFINDEX3D should check indices when CCTK_DEBUG is defined ----------------------+----------------------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: | ----------------------+----------------------------------------------------- It should. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/468> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac July 2011