Trac October 2013

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[Einstein Toolkit] #1276: Intel 2013.1.117 mis-compiles NewRad
by Einstein Toolkit 16 Mar '17

16 Mar '17

#1276: Intel 2013.1.117 mis-compiles NewRad -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: NewRad | -----------------------------------+---------------------------------------- Intels compiler fails (with -O2) to push values for bmin onto the stack in lines 316 of newrad.cc and line 126 of extrap.cc. Adding printf's for bmin perturbs the bug out of existence, but adding a printf of the address of bmax and reveals that at the time extrap_kernel is call the integer just before this address is still the initialization value of bmin[2] and not the correct value. The attached patch disables optimization for the two driver functions affected (but not the actual kernel). The patch is specific (via an #if) for this particular compiler and version. What is the best way of handling this? Target any intel version starting from the known failing one until we know of known good one? Or starting from an older known good one (that would be intel 11 in my case). Hopefully no similar bug is triggered by Carpet's use of the same idiom. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1276> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1439: SSL certificate check failing
by Einstein Toolkit 16 Mar '17

16 Mar '17

#1439: SSL certificate check failing --------------------+------------------------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: major | Milestone: Component: Other | Version: development version Keywords: | --------------------+------------------------------------------------------- The check for SSL certificates in line 535: {{{#perl # check for svn SSL problems if ( $rec{"TYPE"} eq "svn" && defined $rec{"AUTH_URL"} ) { my $base = $rec{"AUTH_URL"}; $base =~ s/(https\:\/\/[\w\.]+)\/(.*)$/$1/i; unless ( defined $svn_servers{$base} ) { my $ret = `$svn --non-interactive info $rec{AUTH_URL} 2>&1`; if ( $ret =~ /Server certificate verification failed/ ) { $svn_servers{$base} = 0; } else { $svn_servers{$base} = 1; } } } }}} is incorrect since eg for the ET manifest where {{{ AUTH_URL=https://svn.einsteintoolkit.org/$1/trunk }}} the executed svn command is: {{{ svn --non-interactive info https://svn.einsteintoolkit.org/$1/trunk 2>&1 }}} which actually returns and error: {{{ svn: E175002: Unable to connect to a repository at URL 'https://svn.einsteintoolkit.org/trunk' svn: E175002: The OPTIONS request returned invalid XML in the response: XML parse error at line 1: Extra content at the end of the document (https://svn.einsteintoolkit.org/trunk) }}} but the code does not test for svn failures at all at this point. The simplest fix would be to move the check further down where {{{$1}}} has been replaced by an actual value, eg into the loop: {{{ # we are splitting each group of components into individuals # to check for existence. they will now be passed individually to # the checkout/update subroutines. this will take up more memory, # but it should make it easier if the user decides to add another # component from the same repository later my @checkouts = split( /\s+/m, $rec{"CHECKOUT"} ); foreach my $checkout (@checkouts) { }}} in line 565 which however causes the test to run for every single CHECKOUT item. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1439> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #394: Testsuite log file should contain more information
by Einstein Toolkit 12 Dec '16

12 Dec '16

#394: Testsuite log file should contain more information -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: testsuites | -------------------------+-------------------------------------------------- It is useful to look at the testsuite log file for information about how the tests were run. For example, which compiler was used, and with what compiler options. We need to balance this against providing information which will always change, making diffs hard to read. The most extreme case would be to output all make variables. Maybe better would be to output CC, CFLAGS, CXX, etc. Another option would be to parse these and say "intel compiler", "gcc", "pgi" etc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/394> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #382: SimFactory home directory on Kraken is too specific
by Einstein Toolkit 01 Jun '16

01 Jun '16

#382: SimFactory home directory on Kraken is too specific ------------------------+--------------------------------------------------- Reporter: hinder | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: ET_2011_05 Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- The mdb entry for Kraken in SimFactory has 'sourcebasedir' => '/nics/b/home/@USER@', My home directory is '/nics/d/home/@USER@' Either we could leave the source base dir as unset to force the user to set it, or we could automatically detect the location of the user's home directory (better). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/382> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #960: Dissipation thorn schedules LOCAL routines after GLOBAL ones
by Einstein Toolkit 27 May '16

27 May '16

#960: Dissipation thorn schedules LOCAL routines after GLOBAL ones ----------------------------------------------+----------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: Dissipation and SphericalSurface | ----------------------------------------------+----------------------------- Dissipation currently contains a schedule item {{{ SCHEDULE setup_epsdis AT cctk_poststep after SphericalSurface_HasBeenSet { LANG: C SYNC: epsdisA_group } "Setup spatially varying dissipation" }}} However SphericalSurface_HasBeenSet is AFTER SphericalSurface_Set which is a GLOBAL routine. Since GLOBAL routines run last in POSTSTEP (which is in EVOL) the AFTER modifier is ignored for all but the last (finest) refinement level. This can lead to the wrong surface shape to be used by the local routines. It might actually make sense to teach the flesh about GLOBAL/LOCAL etc and refuse AFTER/BEFORE statements that span different modes. This of course depends on how much work this is and if we expect the dependency and task based scheduler to be finished soon and if there are legitimate uses for AFTER/BEFORE to span modes. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/960> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #912: Use CACTUS_CONFIGS_DIR in Formaline
by Einstein Toolkit 23 May '16

23 May '16

#912: Use CACTUS_CONFIGS_DIR in Formaline -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- Formaline assumes that configurations are stored in a "configs" subdirectory of $CCTK_HOME. Use $CACTUS_CONFIGS_DIR instead. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/912> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #584: Use of uninitialized value in concatenation
by Einstein Toolkit 07 May '16

07 May '16

#584: Use of uninitialized value in concatenation ------------------------+--------------------------------------------------- Reporter: hinder | Owner: eschnett Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- After failing to check out a thornlist (the current einsteintoolkit.th) the automated build and test system re-runs GetComponents with --update. On 27-Sep-2011, this gave the error: {{{ Use of uninitialized value in concatenation (.) or string at ./GetComponents line 2514. }}} This line seems to be {{{ $url = "(".$component{"URL"}.")|(".$component{"AUTH_URL"}.")"; }}} Is the problem that SimFactory doesn't have an AUTH_URL? I'm attaching the log of the testsuite script. I don't know if the error is serious or not, since the checkout has already failed. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/584> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #702: Tests should use IO::out_fileinfo = "none"
by Einstein Toolkit 18 Apr '16

18 Apr '16

#702: Tests should use IO::out_fileinfo = "none" -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- The Cactus User Guide (http://einsteintoolkit.org/documentation/UsersGuide/UsersGuidech9.html#x13-…) recommends that test output files should always be the same, and hence use IO::out_fileinfo = "none". I would like to implement this for the tests in the ET, as it makes comparing test output using standard (non-Cactus testsuite mechanism) diff tools possible. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/702> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1419: Cactus should produce no errors in Valgrind
by Einstein Toolkit 12 Nov '15

12 Nov '15

#1419: Cactus should produce no errors in Valgrind -------------------------+-------------------------------------------------- Reporter: sbrandt | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Cactus_4.3.0 Component: Cactus | Version: development version Keywords: | -------------------------+-------------------------------------------------- Valgrind is a useful tool for identifying a large number of coding problems. Currently, running Cactus under valgrind produces a large number of spurious errors due to the implementation of the string library. Attempts to use the valgrind suppression mechanism to eliminate them have proven difficult. However, these errors all go away if we simply replace all calls to strdup() with calls to util_Strdup(), a function which is already part of Cactus. Making this replacement shouldn't have any negative impacts, and it would make valgrind more usable. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1419> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #706: External Library Support
by Einstein Toolkit 12 Nov '15

12 Nov '15

#706: External Library Support -------------------------+-------------------------------------------------- Reporter: sbrandt | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Cactus_4.1.0 Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- We should remove support for all external library support that's wired into the flesh (except maybe MPI) in favor of the newer more generic mechanism. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/706> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac October 2013