Trac October 2015

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109 discussions

[Einstein Toolkit] #1676: Add CT_MultiLevel elliptic solver to the Einstein Toolkit
by Einstein Toolkit 08 Feb '16

08 Feb '16

#1676: Add CT_MultiLevel elliptic solver to the Einstein Toolkit -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: Other | Version: development version Keywords: | -------------------------+-------------------------------------------------- This elliptic solver (http://lists.einsteintoolkit.org/pipermail/users/2013-August/003174.html) is being used by more people now, and it would be good to have it in the toolkit. It has tests and documentation, and the author supports (though has not requested) inclusion (http://lists.einsteintoolkit.org/pipermail/users/2014-January/003425.html). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1676> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1832: Rewrite git handling in Formaline
by Einstein Toolkit 26 Nov '15

26 Nov '15

#1832: Rewrite git handling in Formaline -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- Handle git repositories in a single script, vastly simplifying the code. This also correct several error or inconsistencies along the way. - tar files are no longer recored in git (they lead to very large repositories) - the code is now serial (since git is serial anyway), so that locking the repo is no longer necessary - use the flesh's TAR variable instead of looking for tar - correct paths returned by "find" (git is picky about double slashes) See <https://bitbucket.org/cactuscode/cactusutils/pull-requests/4/handle- git-repositories-in-a-single-script/diff>. Fixes #1830. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1832> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1830: Formaline "Could not tag" warning when building on Datura
by Einstein Toolkit 23 Nov '15

23 Nov '15

#1830: Formaline "Could not tag" warning when building on Datura -----------------------------------+---------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: Formaline | -----------------------------------+---------------------------------------- Building the ET on datura leads to an odd warning from formaline/git. {{{ Could not tag Command was /home/ianhin/Cactus/EinsteinToolkitGit/configs/sim/scratch/Formaline/bin /git-lock.pl /usr/bin/git tag 'build-sim-datura- ianhin-2015.10.23-10.51.01-2256' at /home/ianhin/Cactus/EinsteinToolkitGit/configs/sim/scratch/Formaline/bin /git-commit-everything.pl line 48. Formaline: WARNING: Error while committing to repository }}} Full output is below. {{{ Checking status of thorn CarpetRegrid Checking status of thorn CarpetRegrid2 Checking status of thorn CarpetSlab Checking status of thorn GRHydro Creating /home/ianhin/Cactus/EinsteinToolkitGit/configs/sim/lib/libthorn_CT_MultiLevel.a Checking status of thorn NoExcision Checking status of thorn PeriodicCarpet Checking status of thorn TestCarpetGridInfo Formaline: Adding thorn CT_MultiLevel to git repository... Creating Formaline tarball for thorn CT_MultiLevel COMPILING arrangements/EinsteinInitialData/NoExcision/src/getlevelinfo.cc Updating /home/ianhin/Cactus/EinsteinToolkitGit/configs/sim/lib/libthorn_NoExcision.a Formaline: Adding thorn NoExcision to git repository... Creating Formaline tarball for thorn NoExcision Formaline: Committing source tree to git repository... Could not tag Command was /home/ianhin/Cactus/EinsteinToolkitGit/configs/sim/scratch/Formaline/bin /git-lock.pl /usr/bin/git tag 'build-sim-datura- ianhin-2015.10.23-10.51.01-2256' at /home/ianhin/Cactus/EinsteinToolkitGit/configs/sim/scratch/Formaline/bin /git-commit-everything.pl line 48. Formaline: WARNING: Error while committing to repository Formaline: Pushing source tree to master git repository... Formaline: Pushing to local repository /home/ianhin/Cactus/EinsteinToolkitGit/../CactusSourceJar.git... Formaline: Done. Formaline: (Formaline has finished updating the git repositories. Formaline: If the build process seems to hang, some other command Formaline: is still running, e.g. the final link stage.) Creating Formaline tarball for thorn OpenBLAS Creating Formaline tarball for thorn HDF5 Creating Formaline tarball for thorn MPI ________________________________________________________________________ Creating cactus_sim in /home/ianhin/Cactus/EinsteinToolkitGit/exe from EinsteinAnalysis/ADMAnalysis EinsteinBase/ADMBase EinsteinBase/ADMCoupling EinsteinBase/ADMMacros EinsteinAnalysis/ADMMass Numerical/AEILocalInterp EinsteinAnalysis/AHFinder EinsteinAnalysis/AHFinderDirect CactusBase/Boundary CTThorns/CT_Analytic CTThorns/CT_MultiLevel EinsteinAnalysis/CalcK Carpet/Carpet Carpet/CarpetEvolutionMask Carpet/CarpetIOASCII Carpet/CarpetIOBasic Carpet/CarpetIOHDF5 Carpet/CarpetIOScalar Carpet/CarpetIntegrateTest Carpet/CarpetInterp Carpet/CarpetInterp2 Carpet/CarpetLib Carpet/CarpetMask Carpet/CarpetProlongateTest Carpet/CarpetReduce Carpet/CarpetRegrid Carpet/CarpetRegrid2 Carpet/CarpetRegridTest Carpet/CarpetSlab Carpet/CarpetTracker CactusBase/CartGrid3D CactusNumerical/Cartoon2D EinsteinBase/Constants WVUThorns/Convert_to_HydroBase CactusBase/CoordBase EinsteinBase/CoordGauge Carpet/CycleClock CactusExamples/DemoInterp CactusNumerical/Dissipation EinsteinInitialData/DistortedBHIVP EinsteinAnalysis/EHFinder EinsteinBase/EOS_Base EinsteinEOS/EOS_Hybrid EinsteinEOS/EOS_IdealFluid EinsteinEOS/EOS_Omni EinsteinEOS/EOS_Polytrope EinsteinExact/EinsteinExact_Test CactusElliptic/EllBase CactusElliptic/EllSOR EinsteinInitialData/Exact EinsteinAnalysis/Extract ExternalLibraries/FFTW3 CactusExamples/FleshInfo CactusUtils/Formaline CactusBase/Fortran EinsteinEvolve/GRHydro EinsteinEvolve/GRHydro_InitData ExternalLibraries/GSL EinsteinExact/GaugeWave KrancNumericalTools/GenericFD ExternalLibraries/HDF5 CactusConnect/HTTPD CactusConnect/HTTPDExtra CactusExamples/HelloWorld Carpet/HighOrderWaveTest EinsteinBase/HydroBase EinsteinAnalysis/Hydro_Analysis EinsteinInitialData/Hydro_InitExcision EinsteinInitialData/IDAnalyticBH EinsteinInitialData/IDAxiBrillBH EinsteinInitialData/IDAxiOddBrillBH EinsteinInitialData/IDBrillData EinsteinInitialData/IDConstraintViolate EinsteinInitialData/IDFileADM EinsteinInitialData/IDLinearWaves CactusWave/IDScalarWave CactusWave/IDScalarWaveC CactusWave/IDScalarWaveCXX CactusWave/IDScalarWaveElliptic CactusExamples/IDWaveMoL WVUThorns/ID_converter_ILGRMHD CactusBase/IOASCII CactusBase/IOBasic CactusPUGHIO/IOHDF5 CactusPUGHIO/IOHDF5Util CactusIO/IOJpeg CactusBase/IOUtil WVUThorns/IllinoisGRMHD CactusBase/InitBase CactusNumerical/InterpToArray EinsteinExact/KerrSchild ExternalLibraries/LORENE CactusNumerical/LocalInterp CactusNumerical/LocalInterp2 CactusNumerical/LocalReduce Carpet/LoopControl McLachlan/ML_ADMConstraints McLachlan/ML_ADMQuantities McLachlan/ML_BSSN McLachlan/ML_BSSN_Helper McLachlan/ML_BSSN_Test McLachlan/ML_CCZ4 McLachlan/ML_CCZ4_Helper McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy McLachlan/ML_WaveToy_Test ExternalLibraries/MPI CactusUtils/MemSpeed EinsteinInitialData/Meudon_Bin_BH EinsteinInitialData/Meudon_Bin_NS EinsteinInitialData/Meudon_Mag_NS EinsteinExact/Minkowski CactusNumerical/MoL EinsteinExact/ModifiedSchwarzschildBL EinsteinAnalysis/Multipole CactusUtils/NaNCatcher CactusUtils/NaNChecker EinsteinEvolve/NewRad CactusUtils/Nice EinsteinInitialData/NoExcision CactusUtils/NoMPI CactusNumerical/Noise CactusNumerical/Norms PITTNullCode/NullConstr PITTNullCode/NullDecomp PITTNullCode/NullEvolve PITTNullCode/NullExact PITTNullCode/NullGrid PITTNullCode/NullInterp PITTNullCode/NullNews PITTNullCode/NullPsiInt PITTNullCode/NullSHRExtract PITTNullCode/NullVars ExternalLibraries/OpenBLAS ExternalLibraries/OpenSSL EinsteinAnalysis/Outflow ExternalLibraries/PAPI CactusPUGH/PUGH CactusPUGH/PUGHInterp CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic Carpet/PeriodicCarpet CactusExamples/Poisson EinsteinAnalysis/PunctureTracker EinsteinAnalysis/QuasiLocalMeasures Carpet/ReductionTest Carpet/ReductionTest2 Carpet/ReductionTest3 CactusNumerical/ReflectionSymmetry Carpet/RegridSyncTest EinsteinInitialData/RotatingDBHIVP CactusNumerical/RotatingSymmetry180 CactusNumerical/RotatingSymmetry90 CactusExamples/SampleBoundary CactusExamples/SampleIO WVUThorns/Seed_Magnetic_Fields EinsteinUtils/SetMask_SphericalSurface EinsteinExact/ShiftedGaugeWave CactusNumerical/Slab CactusNumerical/SlabTest CactusConnect/Socket CactusNumerical/SpaceMask PITTNullCode/SphericalHarmonicDecomp PITTNullCode/SphericalHarmonicRecon PITTNullCode/SphericalHarmonicReconGen CactusNumerical/SphericalSurface EinsteinBase/StaticConformal CactusNumerical/SummationByParts CactusBase/SymBase CactusUtils/SystemStatistics CactusUtils/SystemTopology CactusElliptic/TATelliptic EinsteinUtils/TGRtensor EinsteinInitialData/TOVSolver CactusUtils/TerminationTrigger CactusTest/TestArrays Carpet/TestCarpetGridInfo CactusTest/TestComplex CactusTest/TestCoordinates CactusTest/TestFortranCrayPointers CactusTest/TestFortranDependencies1 CactusTest/TestFortranDependencies2 CactusTest/TestFpointerNULL CactusTest/TestFreeF90 CactusTest/TestGlobalReduce CactusTest/TestInclude1 CactusTest/TestInclude2 CactusNumerical/TestLocalInterp2 CactusNumerical/TestLocalReduce CactusTest/TestLoop Carpet/TestLoopControl CactusTest/TestMath CactusTest/TestMoL CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule CactusTest/TestStrings CactusTest/TestTable CactusTest/TestTimers CactusTest/TestTypes CactusBase/Time CactusExamples/TimerInfo CactusUtils/TimerReport Carpet/Timers EinsteinBase/TmunuBase CactusUtils/Trigger EinsteinInitialData/TwoPunctures EinsteinExact/Vaidya2 CactusUtils/Vectors CactusWave/WaveBinarySource CactusExamples/WaveMoL CactusExamples/WaveToy1DF77 CactusExamples/WaveToy2DF77 CactusWave/WaveToyC CactusWave/WaveToyCXX CactusWave/WaveToyExtra CactusWave/WaveToyF77 CactusWave/WaveToyF90 CactusWave/WaveToyFreeF90 EinsteinAnalysis/WeylScal4 ExternalLibraries/hwloc ExternalLibraries/libjpeg ExternalLibraries/pciutils ExternalLibraries/pthreads ExternalLibraries/zlib }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1830> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1419: Cactus should produce no errors in Valgrind
by Einstein Toolkit 12 Nov '15

12 Nov '15

#1419: Cactus should produce no errors in Valgrind -------------------------+-------------------------------------------------- Reporter: sbrandt | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Cactus_4.3.0 Component: Cactus | Version: development version Keywords: | -------------------------+-------------------------------------------------- Valgrind is a useful tool for identifying a large number of coding problems. Currently, running Cactus under valgrind produces a large number of spurious errors due to the implementation of the string library. Attempts to use the valgrind suppression mechanism to eliminate them have proven difficult. However, these errors all go away if we simply replace all calls to strdup() with calls to util_Strdup(), a function which is already part of Cactus. Making this replacement shouldn't have any negative impacts, and it would make valgrind more usable. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1419> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #706: External Library Support
by Einstein Toolkit 12 Nov '15

12 Nov '15

#706: External Library Support -------------------------+-------------------------------------------------- Reporter: sbrandt | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Cactus_4.1.0 Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- We should remove support for all external library support that's wired into the flesh (except maybe MPI) in favor of the newer more generic mechanism. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/706> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #641: Parameter files and thornlists could be tested as part of the release process
by Einstein Toolkit 11 Nov '15

11 Nov '15

#641: Parameter files and thornlists could be tested as part of the release process -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: ET_2012_05 Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- There are a number of parameter files and thornlists included as examples with thorns in the ET, and in Cactus. Would it be feasible to have these tested as part of the release process? For example, they should run without crashing or missing thorns, should not trigger NaNs etc, and we should minimise any warnings that are emitted. It would be nice to automate this, though it probably requires a cluster, so would be distinct from the usual test suite procedure, due to requiring more memory than tests. Something to think about for the next release. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/641> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1762: thorn lists in utils refer to old svn repositories
by Einstein Toolkit 11 Nov '15

11 Nov '15

#1762: thorn lists in utils refer to old svn repositories --------------------+------------------------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: major | Milestone: ET_2015_05 Component: Other | Version: development version Keywords: | --------------------+------------------------------------------------------- The thornlists in https://bitbucket.org/cactuscode/utilities.git refer to the old Subversion repositories. This should be fixed before the next release. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1762> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #697: Repository and thorn names cannot be different
by Einstein Toolkit 10 Nov '15

10 Nov '15

#697: Repository and thorn names cannot be different ---------------------------+------------------------------------------------ Reporter: eschnett | Owner: eric9 Type: defect | Status: new Priority: critical | Milestone: Component: GetComponents | Version: Keywords: | ---------------------------+------------------------------------------------ I am accessing some thorns stored in git repositories at bitbucket.org, which insists that all repository names are all lower case. I don't know how to specify this in GetComponents. When I say !TARGET = $ARR !TYPE = git !URL = git@bitbucket.org:user/thorn.git !AUTH_URL = git@bitbucket.org:user/thorn.git !CHECKOUT = Arrangement/Thorn then GetComponents does not create a symbolic link from Thorn to ../../repos/thorn, but to ../../repos/thorn/Arrangement/Thorn instead. How do I avoid this? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/697> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1834: Thorn CT_Analytic does not build on Shelob
by Einstein Toolkit 01 Nov '15

01 Nov '15

#1834: Thorn CT_Analytic does not build on Shelob -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: unset | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- The file CT_Analytic_Exact_Calc.cc takes more than 30 minutes to build on Shelob, and the build process is thus aborted by the operating system: {{{ COMPILING arrangements/CTThorns/CT_Analytic/src/CT_Analytic_Exact_Calc.cc Message from root@shelob1 on <no tty> at 17:25 ... {string1} EOF icpc: error #10106: Fatal error in /usr/local/compilers/Intel/composer_xe_2013.5.192/bin/intel64/mcpcom, terminated by kill signal compilation aborted for /project/eschnett/shelob/Cvanilla/configs/sim/build/CT_Analytic/CT_Analytic_Exact_Calc.cc (code 1) }}} I've looked at the source code. It seems Kranc-generated, with expressions spanning many lines and many calls to pow. Maybe a small change to the Kranc script choosing different options (e.g. enabling CSE, or replacing calls to pow by explicit multiplication) could remedy this. At the moment I will disable this thorn on Shelob. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1834> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1833: add version to LORENE library
by Einstein Toolkit 28 Oct '15

28 Oct '15

#1833: add version to LORENE library -----------------------------------+---------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: ET_2015_11 Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- Now that capabilities can have versions, I propose to give the current LORENE external library the version 2014-04-18: the date the code was pulled from Lorene CVS and added to our repository (according to the log). Since Lorene is (still) in CVS and doesn't use release versions, a date is the best we can do. Also, I propose to let the three thorns in the ET that use LORENE depend on that version in their configuration.ccl . -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1833> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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