New subject: [Einstein Toolkit] #2117: CarpetIOHDF5 commit 69c73fb1 " CarpetIOHDF5: Add "active" attribute to grid function dataset describing which points are active" breaks 'IO::out_mode = "onefile"' (was: CarpetIOHDF5 commit 69c73fb1 " CarpetIOHDF5: Add "active" attribute to grid function dataset describing which points are active" break 'IO::out_mode = "onefile"')

5 Feb 2018


      #2117: CarpetIOHDF5 commit 69c73fb1 " CarpetIOHDF5: Add "active" attribute to grid
function dataset describing which points are active" break 'IO::out_mode =
"onefile"'
--------------------+-------------------------------------------------------
 Reporter:  rhaas   |       Owner:  eschnett           
     Type:  defect  |      Status:  new                
 Priority:  major   |   Milestone:                     
Component:  Carpet  |     Version:  development version
 Keywords:          |  
--------------------+-------------------------------------------------------
 Setting
 {{{
 IO::out_mode            = "onefile"
 }}}
 in a parfile and running with more than 1 MPI ranks causes and out-of-
 range array access in Output.cc in line 913:
 {{{
     ostringstream buf;
     buf << (vdd.at(Carpet::map)
                 ->local_boxes.at(mglevel)
                 .at(refinementlevel)
 ---->           .at(local_component)
                 .active);
 }}}
 due to {{{local_component}}} being -1. This is the backtrace:
 {{{
 #6  0x00007ffff3a03355 in std::__throw_out_of_range_fmt(char const*, ...)
 ()
    from /usr/lib/x86_64-linux-gnu/libstdc++.so.6
 #7  0x00005555578f17ee in std::vector<dh::local_dboxes,
 std::allocatordh::local_dboxes >::_M_range_check (__n=<optimized out>,
 this=<optimized out>) at /usr/include/c++/7/bits/stl_vector.h:825
 #8  std::vector<dh::local_dboxes, std::allocatordh::local_dboxes >::at
 (__n=<optimized out>,
     this=<optimized out>) at /usr/include/c++/7/bits/stl_vector.h:846
 #9  CarpetIOHDF5::AddAttributes (cctkGH=cctkGH@entry=0x55555f829ab0,
     fullname=fullname@entry=0x5555634efb10 "TMUNUBASE::eTxx", vdim=3,
 refinementlevel=<optimized out>,
     refinementlevel@entry=0, request=request@entry=0x5555635801b0,
 bbox=...,
     dataset=360287970189640065, is_index=false)
     at
 /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/build/CarpetIOHDF5/Output.cc:913
 #10 0x00005555578f2a45 in CarpetIOHDF5::WriteVarChunkedSequential
 (cctkGH=cctkGH@entry=0x55555f829ab0,
     outfile=outfile@entry=72057594037928056, io_bytes=@0x7fffffffb960:
 62212, request=0x5555635801b0,
     called_from_checkpoint=called_from_checkpoint@entry=true,
 indexfile=indexfile@entry=-1)
     at
 /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/build/CarpetIOHDF5/Output.cc:513
 #11 0x00005555578d9bdf in CarpetIOHDF5::Checkpoint (cctkGH=0x55555f829ab0,
 called_from=0)
     at
 /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/build/CarpetIOHDF5/CarpetIOHDF5.cc:1218
 }}}
To reproduce:
{{{
 wget https://einsteintoolkit.org/gallery/ns/tov.par
 OMP_NUM_THREADS=1 mpirun -n 2 exe/cactus_sim tov.par
 }}}
 }}}
-- 
Ticket URL: https://trac.einsteintoolkit.org/ticket/2117
Einstein Toolkit http://einsteintoolkit.org
The Einstein Toolkit

[Einstein Toolkit] #2117: CarpetIOHDF5 commit 69c73fb1 " CarpetIOHDF5: Add "active" attribute to grid function dataset describing which points are active" break 'IO::out_mode = "onefile"'