#2598: thornyflat - production run segmentation fault

Reporter: Maria Status: new Milestone: Version: ET_2021_11 Type: bug Priority: major Component:

Simfactory scripts for ThornyFlat give segmentation fault in production run. I am attaching the cfg, ini, run and sub scripts.

In the simulations directory, the SIMFACTORY directory does not have inside the subdirectories: exe, cfg, run and par and NODES is empty. The only file is the properties.ini, which includes:

____

Loading torque version 6.1.3 : dev/torque/6.1.3

Loading openmpi version 4.1.2_gcc112 : parallel/openmpi/4.1.2_gcc112

Loading openblas version 0.3.19_gcc112 : libs/openblas/0.3.19_gcc112

+ set -e

+ cd /scratch/mbh0012/simulations/bnsG2/output-0000-active

+ echo Checking:

+ pwd

+ hostname

+ date

+ cat

+ echo Environment:

+ export GMON_OUT_PREFIX=gmon.out

+ GMON_OUT_PREFIX=gmon.out

+ export CACTUS_NUM_PROCS=2

+ CACTUS_NUM_PROCS=2

+ export CACTUS_NUM_THREADS=20

+ CACTUS_NUM_THREADS=20

+ export OMP_NUM_THREADS=20

+ OMP_NUM_THREADS=20

+ env

+ sort

+ echo Starting:

++ date +%s

+ export CACTUS_STARTTIME=1642991790

+ CACTUS_STARTTIME=1642991790

+ mpiexec -n 2 -npernode 2 /scratch/mbh0012/simulations/bnsG2/SIMFACTORY/exe/cactus_nst -L 3 /scratch/mbh0012/simulations/bnsG2/output-0000/nsnstohmns.par

[trcis001:09698] *** Process received signal ***

[trcis001:09698] Signal: Segmentation fault (11)

[trcis001:09698] Signal code:  (128)

[trcis001:09698] Failing at address: (nil)

[trcis001:09698] [ 0] /lib64/libpthread.so.0(+0xf630)[0x2b4fc7e60630]

[trcis001:09698] [ 1] /shared/software/parallel/openmpi/4.1.2_gcc112/lib/libopen-rte.so.40(orte_get_attribute+0x21)[0x2b4fc6f4b101]

[trcis001:09698] [ 2] /shared/software/parallel/openmpi/4.1.2_gcc112/lib/libopen-rte.so.40(orte_plm_base_setup_job+0xf0)[0x2b4fc6f83530]

[trcis001:09698] [ 3] /lib64/libevent_core-2.0.so.5(event_base_loop+0x774)[0x2b4fc7a2f3a4]

[trcis001:09698] [ 4] mpiexec[0x40133a]

[trcis001:09698] [ 5] /lib64/libc.so.6(__libc_start_main+0xf5)[0x2b4fc808f555]

[trcis001:09698] [ 6] mpiexec[0x40114e]

[trcis001:09698] *** End of error message ***

/scratch/mbh0012/simulations/bnsG2/output-0000/SIMFACTORY/RunScript: line 24:  9698 Segmentation fault      (core dumped) mpiexec -n 2 -npernode 2 /scratch/mbh0012/simulations/bnsG2/SIMFACTORY/exe/cactus_nst -L 3 /scratch/mbh0012/simulations/bnsG2/output-0000/nsnstohmns.par attachment: thornyflat.cfg (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/25...) attachment: thornyflat.ini (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/25...) attachment: thornyflat.run (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/25...) attachment: thornyflay.sub (https://api.bitbucket.org/2.0/repositories/einsteintoolkit/tickets/issues/25...)

-- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2598/thornyflat-product...