Trac January 2011

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[Einstein Toolkit] #246: --thornlist option broken
by Einstein Toolkit 29 Jan '11

29 Jan '11

#246: --thornlist option broken ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: blocker | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- The --thornlist option seems to be broken. I append a log file demonstrating this. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/246> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #249: Remote build broken
by Einstein Toolkit 28 Jan '11

28 Jan '11

#249: Remote build broken ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: blocker | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- I want to build a debug configuration remotely on Eric. This is the screen output I receive. It seems the argument of the --thornlist option is lost in some way. Building debug configuration... [2011-01-28 19:59:56] Executing: ./simfactory/bin/sim --remote eric build --reconfig --debug --opti onlist=queenbee-mvapich2.cfg --submitscript=queenbee-mvapich2.sub --runscript=qu eenbee-mvapich2.run --thornlist=manifest/einsteintoolkit.th DEBUG: Simfactory command: ./simfactory/bin/../lib/sim.py "--remote" "eric" "bui ld" "--reconfig" "--debug" "--optionlist=queenbee-mvapich2.cfg" "-- submitscript= queenbee-mvapich2.sub" "--runscript=queenbee-mvapich2.run" "-- thornlist=manifest /einsteintoolkit.th" DEBUG: Version exported The Simulation Factory: Manage Cactus simulations Info: defs: /home/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/defs.ini Info: defs.local: /home/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/defs. local.ini Executing command for remote machine: eric usage: sim.py [args] command Available Commands: print-mdb print parsable mdb sync sync cactus sourcetree to a remote machine remove-submitscript remove a submit script from a configuration submit submit a simulation archive archive a simulation or an individual restart list-configurations list simfactory cactus configurations print-mdb-entry list information about a single machine create create a simulation create-run create and run a simulation cleanup clean up a simulation create-submit create and submit a simulation build build cactus either locally or remotely list-archived-simulations list archived simulations checkout checkout thorns using GetComponents list-simulations list simfactory cactus simulations run launch a simulation stop stop an active simulation execute execute a command setup-silent silently create a set of reasonable defaults show-output show the output of a simulation list-machines list all the machines in the machine database setup interactively configure simfactory run-debug launch simulation using an interactive debugger purge purge a simulation get-archived-simulation retrieve an archived simulation by simulationid get-output-dir get the output directory for a given simulation/restart login launch an interactive shell on a remote machine whoami what is the name of the machine simfactory is running on interactive initiate an interactive session on a compute node sim.py: error: --thornlist option requires a value Warning: Error 256 occured while executing command "/bin/bash -c '{ :; } && { { :; } && { :; } && ssh -Y -o UserKnownHostsFile=/home/eschnett /EinsteinToolkit-hg-vanilla/simfactory/etc/ssh_known_hosts eschnett(a)is.cct.lsu.edu '\''ssh -Y -o UserKnownHostsFile=/home/eschnett /EinsteinToolkit-hg-vanilla/simfactory/etc/ssh_known_hosts eschnett(a)eric.loni.org '\''\'\'''\''cd /work/eschnett && /work/eschnett /EinsteinToolkit-hg-vanilla/simfactory/bin/sim '\''\'\'''\''\'\''\'\'''\'''\''\'\'''\''build'\''\'\'''\''\'\''\'\'''\'''\''\'\'''\'' --runscript --optionlist --submitscript --reconfig --debug --thornlist'\''\'\'''\'''\''; }'" -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/249> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #247: sync broken
by Einstein Toolkit 28 Jan '11

28 Jan '11

#247: sync broken ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: blocker | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- $ ./bin/sim sync numrel07Traceback (most recent call last): File "./bin/../simfactory/lib/sim.py", line 140, in <module> simenv.init(BASE_PATH=BASE_PATH, callingExecutable=os.path.join(BASE_PATH, "bin/sim"), usageString=buildUsageString(), optionGroups=optionGroups) TypeError: init() got an unexpected keyword argument 'BASE_PATH' -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/247> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #243: Wrong error message for non-existing parameter file
by Einstein Toolkit 28 Jan '11

28 Jan '11

#243: Wrong error message for non-existing parameter file ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- I created a simulation specifying a parameter file that does not exist. The error message indicates that simfactory looks for the parameter file within its mdb directory. It should not; it should look for the parameter file relative to the current directory instead. Submitting test job...[2011-01-27 14:35:26] Executing: ./simfactory/bin/sim --remote requin create-submit empty- requin-20 11.01.27-14.00.30 --parfile=par/empty.par --walltime=1:0:0 --procs=4 --num-threads=2DEBUG: Simfactory command: ./simfactory/bin/../lib/sim.py " --remote" "requin" "create-submit" "empty-requin-2011.01.27-14.00.30" "-- parfile=par/empty.par" "--walltime=1:0:0" "--procs=4" "--num- threads=2"DEBUG: Version exportedThe Simulation Factory: Manage Cactus simulations Info: defs: /home/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/defs.ini Info: defs.local: /home/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/defs. local.ini Executing command for remote machine: requinDEBUG: Simfactory command: /work/eschnett/EinsteinToolkit-hg-vanilla/simfactory/ bin/../lib/sim.py "create-submit" "empty-requin-2011.01.27-14.00.30" "-- parfile= par/empty.par" "--procs=4" "--walltime=1:0:0" "--num-threads=2" DEBUG: Version exported The Simulation Factory: Manage Cactus simulations Info: defs: /req-sfs/work/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/defs.ini Info: defs.local: /req-sfs/work/eschnett/EinsteinToolkit-hg- vanilla/simfactory/e tc/defs.local.ini Cactus Directory: /req-sfs/work/eschnett/EinsteinToolkit-hg-vanilla Info: simenv.COMMAND: create-submit Info: Executing command: create_submitdoes not exist Error: specified parfile /req-sfs/work/eschnett/EinsteinToolkit-hg- vanilla/simfa ctory/mdb/parfiles/par/empty.par does not exist or is not readableInfo: executing command: /bin/bash -c '{ :; } && { { :; } && { :; } && ssh -Y -o UserKnownHostsFile=/home/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/ssh _known_hosts eschnett(a)requin.sharcnet.ca '\''cd /work/eschnett && cd /work/eschnett/EinsteinToolkit-hg-vanilla && /work/eschnett /EinsteinToolkit-hg-vanilla/sim factory/bin/sim '\''\'\'''\''create-submit'\''\'\'''\'' '\''\'\'''\''empty-requ in-2011.01.27-14.00.30'\''\'\'''\'' --parfile=par/empty.par --procs=4 --walltime =1:0:0 --num-threads=2'\''; }' Error 256 occured while executing command "/bin/bash -c '{ :; } && { { :; } && { :; } && ssh -Y -o UserKnownHostsFile=/home/eschnett/EinsteinToolkit-hg- vanilla/simfactory/etc/ssh_known_hosts eschnett(a)requin.sharcnet.ca '\''cd /work/eschnet t && cd /work/eschnett/EinsteinToolkit-hg-vanilla && /work/eschnett/EinsteinTool kit-hg-vanilla/simfactory/bin/sim '\''\'\'''\''create-submit'\''\'\'''\'' '\''\ '\'''\''empty-requin-2011.01.27-14.00.30'\''\'\'''\'' --parfile=par/empty.par -- procs=4 --walltime=1:0:0 --num-threads=2'\''; }'" [2011-01-27 14:35:28] -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/243> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #244: Log files are too verbose
by Einstein Toolkit 28 Jan '11

28 Jan '11

#244: Log files are too verbose ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- Restart log files contain many lines like [LOG:2011-01-27 16:35:05] Restart log for simulation empty- requin-2011.01.27-15. 21.30 created/opened with restart id 0, long restart id 0000 There should only be a log entry if the restart (or simulation) is modified. If an operation only examines the restart state, there should be no log entry. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/244> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #245: Log files should be for simulations, not for restarts
by Einstein Toolkit 28 Jan '11

28 Jan '11

#245: Log files should be for simulations, not for restarts ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- The log files should be associated with simulations, not with restarts. They should reside in the main directory, so that they are immediately visible. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/245> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #204: @USER@ is not expanded for a remote build command
by Einstein Toolkit 26 Jan '11

26 Jan '11

#204: @USER@ is not expanded for a remote build command ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: critical | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- A remote build on bp fails with the error: Error 512 occured while executing command "/bin/bash -c '{ export PATH=/usr/apps/patch-2.6.1/bin:$PATH; } && { cd /home/home/ac/eschnett /EinsteinToolkit-hg && echo yes | { mkdir -p /u/home/ac/@USER@/tmp && env TMPDIR=/u/home/ac/@USER@/tmp gmake -j4 sim-debug-config options=/home/home/ac/eschnett/EinsteinToolkit-hg/configs/sim- debug/OptionList; } 2>&1; }'" -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/204> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #240: Missing line breaks in warning
by Einstein Toolkit 26 Jan '11

26 Jan '11

#240: Missing line breaks in warning ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- I received the following warning (which should say "warning" instead of "error", or should not appear at all): Error reading simulation qc0-mclachlan-simple-oliver-2009.09.30-20.01.56 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2009.10.19-16.41.47 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple- oliver-2009.10.19-19.25.35 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2010.02.16-15.22.08 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2010.02.25-11.01.55 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple- oliver-2010.03.05-15.35.49 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2010.03.21-23.33.06 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2010.03.22-13.02.02 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple- oliver-2010.03.22-14.48.26 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2010.03.22-15.24.50 with restart 0, broken/old simulation, skipping Error reading simulation qc0-mclachlan-simple-oliver-2010.03.22-20.48.07 with restart 0, broken/old simulation, skipping Error reading simulation static_tov- oliver-2010.06.06-00.36.14 with restart 0, broken/old simulation, skipping Error reading simulation static_tov-oliver-2010.06.07-11.35.16 with restart 0, broken/old simulation, skipping Error reading simulation static_tov-oliver-2010.09.22-17.22.02 with restart 0, broken/old simulation, skipping Error reading simulation static_tov- oliver-2010.10.08-23.09.00 with restart 0, broken/old simulation, skipping -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/240> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #217: Improve handling of nonexistent schedule groups
by Einstein Toolkit 26 Jan '11

26 Jan '11

#217: Improve handling of nonexistent schedule groups -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: CST | -------------------------+-------------------------------------------------- Currently, if a routine is scheduled in a nonexistent schedule group, there is a nonfatal warning at the time the CST is run. The reason that the warning is nonfatal is that sometimes it is desirable to schedule in a group which only exists if a certain thorn is activated, as the routine would not make sense without that thorn. However, mistyping the group name or not having a sufficiently up-to-date version of the thorn providing the group (see MoL_PseudoEvolution) will lead to the routine not being scheduled at all, with only a warning at CST time. This warning is very easy to miss. I propose making the error a fatal error, and allowing the thorn writer to indicate in the schedule.ccl file that a function is scheduled only "optionally" in a given group, if that is the intention. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/217> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #182: Variable-assignment options to "make" gain additional whitespace
by Einstein Toolkit 26 Jan '11

26 Jan '11

#182: Variable-assignment options to "make" gain additional whitespace --------------------+------------------------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: make | --------------------+------------------------------------------------------- If you build a Cactus configuration using make <configname>-config <option1>=<value1> <option2>=<value2> the <value1>... get spaces added to them in configs/<configname>/config- info. This does not happen if you use options from a file. Depending on how the variables are used, this extra space at the end can be a problem (e.g. it causes problems with GSL_DIR, as the GSL script doesn't expect whitespace at the end of the variable). I traced this to a greedy regular expression in setup_configuration.pl. The attached patch fixes the problem, but has not been tested extensively. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/182> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac January 2011