Trac October 2011

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179 discussions

[Einstein Toolkit] #525: Clean up CCTK_GFINDEX definitions
by Einstein Toolkit 11 May '12

11 May '12

#525: Clean up CCTK_GFINDEX definitions -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- The way in which CCTK_GFINDEX is defined is a bit complex, probably unnecessarily so. The file cctk.h distinguishes between compilers which support inlining and compilers which don't. This is probably useless these days since every compiler supports inlining, and if not, we don't really expect it to be fast. If the compiler supports inlining, we define static inline functions, which may or may not check array indices. If the compiler does not support inlining, and if CCTK_DEBUG is defined, then we use regular functions defined in DebugDefines.c, otherwise (i.e. without CCTK_DEBUG) we use macros. Overall, the indexing functions are defined three times, including once as macros. I suggest to simplify this, based on the assumption that every fast compiler supports inlining. I assume so because (a) the ubiquity of C++, which relies heavily on inlining, and (b) C99 officially introduced inlining 12 years ago. The new setup would have "static inline" definitions (without index checking) in cctk.h, and would have regular functions (with index checking) in DebugDefines.c, and would choose between these two implementations via CCTK_DEBUG. This would eliminate the macros, and would eliminate the case distinction based on whether the compiler supports inlining. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/525> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #262: make error messages in ReflectionSymmetry more informative
by Einstein Toolkit 11 May '12

11 May '12

#262: make error messages in ReflectionSymmetry more informative --------------------------------------------+------------------------------- Reporter: roland.haas@… | Type: enhancement Status: new | Priority: minor Milestone: | Component: Cactus Version: | Keywords: --------------------------------------------+------------------------------- this small patch includes the value of ierr in ReflectionSymmetries error messages -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/262> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #642: Cactus documentation target AllDoc does not make all the documentation
by Einstein Toolkit 08 May '12

08 May '12

#642: Cactus documentation target AllDoc does not make all the documentation -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- The Cactus make AllDoc command does not make all the documentation - specifically it does not make the ThornGuide consisting of documentation for all the thorns. It does make the individual thorn documents. Is there a reason for this? Perhaps in the past this was a performance issue, but the documentation can be generated in minutes now, and typically this is not done very frequently. I think we should change the system so that AllDoc generates all the documentation. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/642> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #588: simfactory tries to create the scratch directory when submitting the job
by Einstein Toolkit 07 May '12

07 May '12

#588: simfactory tries to create the scratch directory when submitting the job ------------------------+--------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- on some machines the desired scratch directory is not visible from the head node but is compute node local (eg. kraken I think or zwicky for sure). Simfactory should not try to create the scratch directory on the node that runs qsub but rather inside of the runscript or submitscript. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/588> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #339: ExternalLibraries/OpenSSL does not compile in 64-bit mode on Mac OS
by Einstein Toolkit 23 Apr '12

23 Apr '12

#339: ExternalLibraries/OpenSSL does not compile in 64-bit mode on Mac OS ---------------------------------------+------------------------------------ Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: Cactus | Version: Keywords: ExternalLibraries/OpenSSL | ---------------------------------------+------------------------------------ Compiling OpenSSL using ExternalLibraries leads to the following warning, followed by a build failure: + cd openssl-1.0.0d + ./config --prefix=/Users/ian/Cactus/et/configs/fink/scratch/external/OpenSSL Operating system: i686-apple-darwinDarwin Kernel Version 10.6.0: Wed Nov 10 18:13:17 PST 2010; root:xnu-1504.9.26~3/RELEASE_I386 WARNING! If you wish to build 64-bit library, then you have to invoke './Configure darwin64-x86_64-cc' *manually*. You have about 5 seconds to press Ctrl-C to abort. Configuring for darwin-i386-cc I don't know how to detect that the compiler is building in 64-bit mode in order to add the corresponding flag to the Configure line. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/339> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #430: Convert all parameter files, examples, and test cases to EOS_Omni
by Einstein Toolkit 17 Apr '12

17 Apr '12

#430: Convert all parameter files, examples, and test cases to EOS_Omni -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- Now that EOS_Omni is standard, we should convert all parameter files. At the moment, these parameter files still reference EOS_Base: EinsteinInitialData/TOVSolver/test/test_one_boost_max/test_one_boost_max.par EinsteinInitialData/TOVSolver/test/test_one_static_max/test_one_static_max.par EinsteinInitialData/TOVSolver/test/test_tov_carpet/test_tov_carpet.par EinsteinInitialData/TOVSolver/test/test_two_av/test_two_av.par EinsteinInitialData/TOVSolver/test/test_two_max/test_two_max.par LSUDevelopment/Refluxing/par/GRHydro_Carpet_Shocktube_base_works_with_gitCarpet.par The Refluxing parameter file is for reference only and should be remove now that hg Carpet is the default. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/430> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #493: All checkpoint files used in test suite need to be regenerated to work with development Carpet
by Einstein Toolkit 17 Apr '12

17 Apr '12

#493: All checkpoint files used in test suite need to be regenerated to work with development Carpet --------------------+------------------------------------------------------- Reporter: hinder | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: Carpet | Version: Keywords: | --------------------+------------------------------------------------------- The current stable and development (git and mercurial) versions of Carpet use incompatible checkpoint file formats. Neither can read the checkpoints generated by the other (http://lists.einsteintoolkit.org/pipermail/users/2011-August/001299.html). The tests checkpointML, recoverML, CarpetWaveToyNewRecover_test_1proc and CarpetWaveToyRecover_test_1proc need to have their checkpoint files regenerated. At this point, it is likely that these tests will start to fail for the stable version of Carpet, but making the stable version read these files would be more effort than it is worth. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/493> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #600: Some ideas for reducing spam on our web forms, if this becomes a problem in the future
by Einstein Toolkit 17 Apr '12

17 Apr '12

#600: Some ideas for reducing spam on our web forms, if this becomes a problem in the future -------------------------------------+-------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Component: EinsteinToolkit website | Version: Keywords: | -------------------------------------+-------------------------------------- http://nedbatchelder.com/text/stopbots.html -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/600> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #651: EOS thorns other than EOS_Omni should be removed from ET
by Einstein Toolkit 17 Apr '12

17 Apr '12

#651: EOS thorns other than EOS_Omni should be removed from ET -------------------+-------------------------------------------------------- Reporter: knarf | Owner: Type: task | Status: new Priority: minor | Milestone: ET_2012_05 Component: Other | Version: development version Keywords: | -------------------+-------------------------------------------------------- -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/651> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #492: Cannot add attachments to tickets "IOError: Client read error (Timeout?) "
by Einstein Toolkit 17 Apr '12

17 Apr '12

#492: Cannot add attachments to tickets "IOError: Client read error (Timeout?) " ----------------------------------+----------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit trac | Version: Keywords: | ----------------------------------+----------------------------------------- This evening I am unable to add attachments to any tickets. After selecting the attachment file, clicking on the button to actually upload it leads to the error message below. This has happened before, but in those cases the attachment was added successfully despite the error message. In this case, no attachment appears. I have tried several times, and none of them worked. Mod_python error: "PythonHandler trac.web.modpython_frontend" Traceback (most recent call last): File "/usr/lib64/python2.4/site-packages/mod_python/apache.py", line 299, in HandlerDispatch result = object(req) File "/usr/lib/python2.4/site-packages/trac/web/modpython_frontend.py", line 149, in handler gateway.run(dispatch_request) File "/usr/lib/python2.4/site-packages/trac/web/wsgi.py", line 89, in run response = application(self.environ, self._start_response) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 481, in dispatch_request return _dispatch_request(req, env, env_error) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 557, in _dispatch_request send_internal_error(env, req, sys.exc_info()) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 635, in send_internal_error description_en = get_description(lambda s, **kw: safefmt(s, kw)) File "/usr/lib/python2.4/site-packages/trac/web/main.py", line 631, in get_description req_args=pformat(req.args), sys_info=sys_info, File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 212, in __getattr__ value = self.callbacks[name](self) File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 195, in 'args': lambda req: arg_list_to_args(req.arg_list), File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 212, in __getattr__ value = self.callbacks[name](self) File "/usr/lib/python2.4/site-packages/trac/web/api.py", line 560, in _parse_arg_list fs = cgi.FieldStorage(fp, environ=self.environ, keep_blank_values=True) File "/usr/lib64/python2.4/cgi.py", line 526, in __init__ self.read_multi(environ, keep_blank_values, strict_parsing) File "/usr/lib64/python2.4/cgi.py", line 646, in read_multi environ, keep_blank_values, strict_parsing) File "/usr/lib64/python2.4/cgi.py", line 528, in __init__ self.read_single() File "/usr/lib64/python2.4/cgi.py", line 661, in read_single self.read_lines() File "/usr/lib64/python2.4/cgi.py", line 683, in read_lines self.read_lines_to_outerboundary() File "/usr/lib64/python2.4/cgi.py", line 710, in read_lines_to_outerboundary line = self.fp.readline() File "/usr/lib/python2.4/site-packages/trac/web/modpython_frontend.py", line 50, in readline return self.req.readline(size) IOError: Client read error (Timeout?) -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/492> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac October 2011