Trac October 2011

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[Einstein Toolkit] #533: Want graphical TRAC statistics
by Einstein Toolkit 17 Apr '12

17 Apr '12

#533: Want graphical TRAC statistics -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: optional | Milestone: Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- It would be nice to have a few graphs on the TRAC front page showing some statistics, e.g. number of important open tickets, mean time before a ticket is closed, etc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/533> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #358: FAQ entry
by Einstein Toolkit 17 Apr '12

17 Apr '12

#358: FAQ entry ----------------------------+----------------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus website | Version: Keywords: | ----------------------------+----------------------------------------------- For a new FAQ: Q: I get errors like "/usr/include/H5Dpublic.h:145: error: too many arguments to function ‘hid_t H5Dopen1(hid_t, const char*)’" A: The HDF5 library you use is either version 1.6 or defaults to it. If it is version 1.6.x, update to 1.8.x. If it is 1.8.x and it defaults to the 1.6 API version, you might be out of luck, especially on Debian Squeeze systems, see http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=537414. What you can then do is to remove (comment) out the macro H5_USE_16_API_DEFAULT in /usr/include/H5pubconf.h. This isn't pretty, but is really a bug in the package and has to be fixed there. There is no way to switch to the new API on those systems, other than specifying the API version of each symbol separately, which would be even messier. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/358> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #576: Einstein toolkit installation problems
by Einstein Toolkit 17 Apr '12

17 Apr '12

#576: Einstein toolkit installation problems -----------------------------+---------------------------------------------- Reporter: Vassilios Mewes | Type: defect Status: new | Priority: major Milestone: | Component: Other Version: ET_2011_05 | Keywords: fortran 77 compilation errors -----------------------------+---------------------------------------------- Hello! I am trying to install the Einstein toolkit. I followed the instructions on the wiki (improved tutorial for new users) i am using the following command to build the configuration: ./simfactory/bin/sim build firsttry --thornlist=manifest/einsteintoolkit.th --optionlist=/home/vass/.cactus/config there are compilation errors of F77 sourcefiles, i tried both gfortran and the older g77 compiler, both give me numerous errors. I am using Ubuntu 11.04 x64... this is my configuration file (for some reason, cactus won't find gfortran unless i specify it in the configuration file, which i believe it should?): CPP = cpp FPP = cpp CC = gcc CXX = g++ F77 = gfortran F90 = gfortran ffppflags= -traditional MPI=OpenMPI here are the error messages when trying to build: above here it is building zlib and HDF5 and so on..i think these are all build correctly.. Checking consistency... Creating Thorn-Flesh bindings... Creating implementation bindings... Creating parameter bindings... Creating variable bindings... Creating schedule bindings... Creating function bindings... CST finished. Checking status of thorn Boundary ________________________________________________________________________ Checking status of thorn CoordBase ________________________________________________________________________ ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn ADMCoupling ________________________________________________________________________ Checking status of thorn ADMMacros ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn AEILocalInterp ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn BLAS ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Fortran ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetLib ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn IOUtil ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetEvolutionMask ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn zlib ________________________________________________________________________ ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetMask ________________________________________________________________________ Checking status of thorn GSL ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CarpetTracker ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn Constants ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn CoordGauge ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn SphericalSurface ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn DistortedBHIVP ________________________________________________________________________ ________________________________________________________________________ Checking status of thorn EOSG_Base ________________________________________________________________________ Preprocessing /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/DistortedBHIVP.F ________________________________________________________________________ Compiling /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/DistortedBHIVP.F Preprocessing /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/Stab3d.F Compiling /home/vass/Cactus/arrangements/EinsteinInitialData/DistortedBHIVP/src/Stab3d.F /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:476.6: 123 format(1x, 'Pars: amp',f8.5,' eta0',f8.5,' c',f8.5,' sigma',f8.5,' 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:476.6: 123 format(1x, 'Pars: amp',f8.5,' eta0',f8.5,' c',f8.5,' sigma',f8.5,' 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:477.6: &n',i3) 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:477.6: &n',i3) 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:519.2: qf(i,j,k) = amp*(1.00000000000000d0+c*cos(phigrd(k))**2)* 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:521.72: $ /sigma**2)))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:522.2: qfetaeta(i,j,k) = amp*(1.00000000000000d0+c*cos(phigrd(k)) 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:529.72: $ )*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:530.2: qfqq(i,j,k) = amp*(-1.00000000000000d0+n)*n*(1.00000000 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:538.72: $ /sigma**2)))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:539.2: qfphi(i,j,k) = -2.00000000000000d0*amp*c*cos(phigrd(k))*(exp(- 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:542.72: $ )*sin(phigrd(k))*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:543.2: qfphiphi(i,j,k) = -2.00000000000000d0*amp*c*cos(phigrd(k))**2* 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:548.72: $ sin(phigrd(k))**2*sin(qgrd(j))**n 1 Error: Unexpected STATEMENT FUNCTION statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:105.6: 10 call usermv(cc,cn,cs,ce,cw,ct,cb,x,Ap,im,jm,km) 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:105.6: 10 call usermv(cc,cn,cs,ce,cw,ct,cb,x,Ap,im,jm,km) 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:138.4: 1 continue 1 Error: Non-numeric character in statement label at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:138.4: 1 continue 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:181.72: goto 10 1 Error: Label 10 referenced at (1) is never defined /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:181.72: goto 10 1 Error: Label 10 referenced at (1) is never defined /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/Stab3d.f:194.72: if (rnorm .gt. tol) goto 1 1 Error: Label 1 referenced at (1) is never defined make[3]: *** [Stab3d.F.o] Error 1 make[3]: *** Waiting for unfinished jobs.... /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:1289.6: 110 continue 1 Error: Bad continuation line at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:1289.6: 110 continue 1 Error: Unclassifiable statement at (1) /home/vass/Cactus/configs/firsttry/build/DistortedBHIVP/DistortedBHIVP.f:474.17: write(*,123)amp,eta0,c,sigma,n 1 Error: FORMAT label 123 at (1) not defined Checking status of thorn EOSG_Polytrope ________________________________________________________________________ make[3]: *** [DistortedBHIVP.F.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/vass/Cactus/configs/firsttry/lib/libthorn_DistortedBHIVP.a] Error 2 make[1]: *** Waiting for unfinished jobs.... as thornlist i am using the einsteintoolkit.th thornlist as downloaded. the compilation errors are not exclusive to the distortedBHIVP file, when i comment this file to be build in the thornlist, other files won't be compiled as well... might be a system error, as i already had problems downloading the toolkit, it wouldn't download completely, but left out LocalInterp and LocalReduce for some strange reason. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/576> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #547: WALLTIME_HOURS incorrect
by Einstein Toolkit 09 Apr '12

09 Apr '12

#547: WALLTIME_HOURS incorrect ------------------------+--------------------------------------------------- Reporter: hinder | Owner: eschnett Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- The SimFactory variable WALLTIME_HOURS should be expanded to the walltime of the job, not the walltime which was requested on the command line. If the user specifies more walltime than the queue allows, SimFactory splits the job into several restarts to give the total walltime requested. However, parameter files expect WALLTIME_HOURS to be the walltime of the job, not of the simulation. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/547> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #646: PITTNullCode/NullNews does not build on BlueGene/P
by Einstein Toolkit 03 Apr '12

03 Apr '12

#646: PITTNullCode/NullNews does not build on BlueGene/P -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- PITTNullCode/NullNews does not build on BlueGene/P; the C++ STL reports an error. The reason seems to be that NULL is interpreted as integer constant instead of a pointer. An explicit case solves this problem there: {{{ Index: src/set_pointers.h =================================================================== --- src/set_pointers.h (revision 3) +++ src/set_pointers.h (working copy) @@ -1,9 +1,9 @@ // define pointer array for past timelevels! - vector<CCTK_REAL*> uBondiP(max_timelevels, NULL); - vector<CCTK_COMPLEX*> Psi4P(max_timelevels, NULL); - vector<CCTK_COMPLEX*> NewsP(max_timelevels, NULL); - vector<CCTK_COMPLEX*> NewsBP(max_timelevels, NULL); + vector<CCTK_REAL*> uBondiP(max_timelevels, (CCTK_REAL*)NULL); + vector<CCTK_COMPLEX*> Psi4P(max_timelevels, (CCTK_COMPLEX*)NULL); + vector<CCTK_COMPLEX*> NewsP(max_timelevels, (CCTK_COMPLEX*)NULL); + vector<CCTK_COMPLEX*> NewsBP(max_timelevels, (CCTK_COMPLEX*)NULL); // Get current timelevel... // We assume here that the two vars uBondi[0] amd uBondi[1] are right next to each }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/646> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #221: Simfactory should complain about unused arguments
by Einstein Toolkit 20 Mar '12

20 Mar '12

#221: Simfactory should complain about unused arguments ------------------------+--------------------------------------------------- Reporter: eschnett | Owner: mthomas Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- When more arguments are given to simfactory that it uses, it should complain with an error message. For example, "sim stop sim1 sim2" stops simulation sim1 and ignores the argument sim2. Instead, it should output an error message if the argument sim2 is ignored. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/221> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #623: use GRHydro_polytrope_handle whenever prim2conpolytrope is called
by Einstein Toolkit 13 Feb '12

13 Feb '12

#623: use GRHydro_polytrope_handle whenever prim2conpolytrope is called --------------------+------------------------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Other | Version: Keywords: | --------------------+------------------------------------------------------- Currently GRHydro uses grhydro_eos_handle in both Primitive2Conservative and Primitive2ConservativePoly and relies on grhydro_eos_handle being an actual handle to the 2d polytype in the later. This means that calling Primitive2ConservativePoly from within a run with grhydro_eos_type == "General" uses the wrong handle (namely the general eos). This is not normally a problem since Primitive2ConservativePoly is only ever called if grhydro_eos_type == "polytype", with the exception of EoSChangeGammaK which always calls Primitive2ConservativePoly (and has to call a polytype routine). There are basically two ways to make this work in this case: * use GRHydro_polytrope_handle in Primitive2ConservativePoly * call prim2conPoly from within EoSChangeGammaK The first option has the disadvantage that this is not what Conservative2Primitive does. The second has the disadvantage that EoSChangeGammaK has to also recompute Yecons (and any other new conservatives we might define) on top of calling prim2conPoly. Any comments? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/623> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #558: Carpet with Periodic Boundary Conditions
by Einstein Toolkit 08 Feb '12

08 Feb '12

#558: Carpet with Periodic Boundary Conditions -----------------------------+---------------------------------------------- Reporter: hfinkel@… | Owner: eschnett Type: enhancement | Status: new Priority: major | Milestone: Component: Carpet | Version: Keywords: carpet periodic | -----------------------------+---------------------------------------------- The current Carpet driver is not compatible with the periodic boundary conditions (as provided by the Periodic thorn or otherwise). Erik's comment on the User's list was: "It is straightforward to implement periodicity in the grid structure -- one needs to take the current grid structure, shift it in the 26 directions, and take the logical union of all 27 grid structures. This will then be automatically clipped. The most complex part is calculating by how much to shift." Please implement support for periodic BCs in Carpet. This will directly enable production science runs. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/558> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #120: Improve built-in help system
by Einstein Toolkit 08 Feb '12

08 Feb '12

#120: Improve built-in help system -------------------------+-------------------------------------------------- Reporter: hinder | Owner: mthomas Type: enhancement | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- SimFactory currently provides a single help screen when you type "sim help". I would like to be able to do "sim help <command>" and get help which is relevant for that command. This help should say briefly what the command does, and give a comprehensive list of the options specific to that command. The top-level "sim help" command should then give a list of the commands, and a list of the simfactory options which apply to all commands. This first help page should be kept as brief as possible so that it is easy to see at a glance what commands are available. The most common commands should be listed first, and maybe separated from the less common commands. I think this is important as it is the first port-of-call when someone wants to know how to use a particular feature, especially when the syntax is similar but not quite the same as in SimFactory 1. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/120> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #543: Change diff format in GetDomponents
by Einstein Toolkit 05 Feb '12

05 Feb '12

#543: Change diff format in GetDomponents ---------------------------+------------------------------------------------ Reporter: eschnett | Owner: eric9 Type: enhancement | Status: new Priority: major | Milestone: Component: GetComponents | Version: Keywords: | ---------------------------+------------------------------------------------ It would be convenient to change the format of GetComponent's --diff command to output diffs that can be directly applied via "patch -p0" from the main Cactus directory. That is, file names such as "a/Tools/CodeGen/Schedule.m" should be changed to "repos/Kranc/Tools/CodeGen/Schedule.m". -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/543> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac October 2011