Trac July 2013

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[Einstein Toolkit] #626: Recovery fails in AHFinderDirect RecoverML with out-of-bounds assertion in CarpetLib
by Einstein Toolkit 28 Oct '13

28 Oct '13

#626: Recovery fails in AHFinderDirect RecoverML with out-of-bounds assertion in CarpetLib --------------------+------------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: defect | Status: new Priority: major | Milestone: ET_2011_10 Component: Carpet | Version: Keywords: | --------------------+------------------------------------------------------- when trying to recover in AHFinderDirect's RecoverML test (parfiles attached) I get: {{{ cactus_et: /home/rhaas/ET_2011_10/arrangements/Carpet/CarpetLib/src/th.hh:79: double th::get_time(int, int, int) const: Assertion `tl>=0 and tl<timelevels' failed. }}} After some debuggin I traced this down to the metric which in CarpetIOHDF5/src/Input.cc:762 is reported (by gf->timelevels (ml, rl)) to have three timelevels. However the timelevels member of gf->t (a th) gives the number of timelevels as two {{{ gf->t.timelevels $28 = 2 }}} Since timelevels is new in Carpet/Hg my suspicion would be that it is not properly updated when gf->set_timelevels is called (the comments in th.hh seem to indicated that it is assumed to be const which seems odd given that ggf::set_timelevels exists). I don't understand enough of Carpet to fix or further debug this. Marking its as major and release relevant in case it is actually a Carpet bug. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/626> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1364: be mor careful extracting $MAKE in RunTestSuite
by Einstein Toolkit 28 Oct '13

28 Oct '13

#1364: be mor careful extracting $MAKE in RunTestSuite ------------------------+--------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: defect | Status: new Priority: critical | Milestone: ET_2013_05 Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- currently sim --testsuite fails on kraken since the extracted $MAKE command is incorrect since it splits at the second "=" in the make definition: {{{ make = env LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/opt/gcc/4.5.1/snos/lib64:/opt/gcc/mpc/0.8.1/lib" make -j2 }}} the attached patch rectifies this. Tested on kraken and lonestar. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1364> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1392: loopcontrol outputs nan values
by Einstein Toolkit 28 Oct '13

28 Oct '13

#1392: loopcontrol outputs nan values --------------------+------------------------------------------------------- Reporter: knarf | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: ET_2013_11 Component: Carpet | Version: development version Keywords: | --------------------+------------------------------------------------------- After a recent update of carpet, some of my par files produce output like this: {{{ INFO (LoopControl): LoopControl statistics: INFO (LoopControl): Loops traversed: 4 INFO (LoopControl): Setups encountered: 14 INFO (LoopControl): Params explored: 14 INFO (LoopControl): Unoptimized time would have been: -nan s INFO (LoopControl): Actual time spent: -nan s (-nan%) INFO (LoopControl): Ideal time could have been: -nan s (-nan%) }}} Although no problem for the run, the 'nan's should probably not be output in that way. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1392> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1251: Use Parsing Expression Grammar for Par Files
by Einstein Toolkit 28 Oct '13

28 Oct '13

#1251: Use Parsing Expression Grammar for Par Files -------------------------+-------------------------------------------------- Reporter: sbrandt | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Other | Version: Keywords: | -------------------------+-------------------------------------------------- Piraha is a parsing framework/library based on Parsing Expression Grammars (PEGs). This allows you to define the grammar of a language using a simple regular-expression-type language, and Piraha will use this to decode an input file into a hierarchical data structure of the parsed data (a "parse tree"). See http://code.google.com/p/piraha-peg/, http://en.wikipedia.org/wiki/Parsing_expression_grammar. I've hacked a version of Cactus to use Piraha for parameter parsing. Please take a look: https://svn.cactuscode.org/flesh/branches/with_piraha This version is able to run the ET testsuite. This version can understand the variables $parfile, $ENV{name}, and $pi (which is 3.14...). Variables can be standalone, or be substituted from inside strings. It can understand mathematical expressions including grouping, order of operation, and a few functions (sin, cos, tan, exp, sqrt). Other parameters from the parameter file are available for use in mathematical expressions. Some debug printing is in place so you can get an idea of what's going on. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1251> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1066: Implement IMEX integrators in MoL
by Einstein Toolkit 25 Oct '13

25 Oct '13

#1066: Implement IMEX integrators in MoL -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- Dana Alic contributed an implementation of IMEX integrators for MoL. I attach the implementation as a patch (based on r133 of MoL). The implementation is well tested. The patch does not apply cleanly, and seems to make some modifications to the schedule etc. as well that have since been superseded by other changes to MoL. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1066> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #652: CACTUS_CONFIGS_DIR should be documented
by Einstein Toolkit 23 Oct '13

23 Oct '13

#652: CACTUS_CONFIGS_DIR should be documented -------------------------+-------------------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- At the moment CACTUS_CONFIGS_DIR is only mentioned in doc/FAQ. It should be documented in the regular documentation as well. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/652> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #963: Improve McLachlan accuracy
by Einstein Toolkit 15 Oct '13

15 Oct '13

#963: Improve McLachlan accuracy -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- James van Meter provided me with an optimised version of McLachlan. He states: 1. You are not taking full advantage of the chi=exp(-2phi) variable. There are several terms you divide by chi or chi^2 in expressions with overall factors exp(-4phi). I rewrote the BSSN equations to make these cancellations before coding. So where you have an expression of the form chi^2(A+B/chi^2), I have chi^2A+B. This gives a slight but noticeable advantage in both accuracy and performance. 2. I added Hamiltonian-constraint-damping terms due to Duez et al. These terms don't seem to be well-known but they are effective. 3. I added a Gamma-constraint-damping term due to Yo et al. 4. I enforce det(g)=1. I have not tested this new version yet, but James suggests to include it into the Einstein Toolkit. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/963> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1372: AHFinderDirect/misner1.2-025 test fails on datura in ET_2013_05 release branch
by Einstein Toolkit 03 Oct '13

03 Oct '13

#1372: AHFinderDirect/misner1.2-025 test fails on datura in ET_2013_05 release branch -----------------------------------+---------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: AHFinderDirect | -----------------------------------+---------------------------------------- AHFinderDirect/misner1.2-025 test fails on datura in ET_2013_05 release branch. Diffs are: {{{ BH_diagnostics.ah1.gp: differences below tolerance on 1 lines BH_diagnostics.ah2.gp: differences below tolerance on 1 lines h.t0.ah1.gp: differences below tolerance on 703 lines h.t0.ah2.gp: differences below tolerance on 698 lines sf_area[0].xg: differences below tolerance on 1 lines sf_min_radius[0].xg: differences below tolerance on 1 lines sf_radius[0]_2D.asc: differences below tolerance on 496 lines sf_radius[1]_2D.asc: substantial differences significant differences on 5 (out of 1058) lines maximum absolute difference in column 3 is 1.75718694541256e+243 maximum relative difference in column 3 is 2899588673.18783 (insignificant differences on 37 lines) }}} Since this does not fail in the ubuntu test VM, it might be something to do with the Intel compiler vs GCC. According to http://einsteintoolkit.org/release- info/parse_testsuite_results.php, it seems that this test was failing on a number of machines for a while. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1372> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1398: make evolution_method etc. parameters of ADMBase steerable
by Einstein Toolkit 25 Aug '13

25 Aug '13

#1398: make evolution_method etc. parameters of ADMBase steerable -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: ADMBase | -----------------------------------+---------------------------------------- this is occasionally useful to continue a run that started in Cowling approximation using a spacetime thorn (or the other way around, continue in cowling once the spacetime settles down to a stationary state). The attached patch makes all but the initial data parameters of admbase steerable on recovery. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1398> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1254: Simplify SimFactory's get-output-dir command
by Einstein Toolkit 19 Aug '13

19 Aug '13

#1254: Simplify SimFactory's get-output-dir command -------------------------+-------------------------------------------------- Reporter: hinder | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- Currently, sim get-output-dir returns: {{{ Simulation name: <simname> Output directory: <basedir>/<simname>/output-NNNN/<parbasename> }}} I think most uses of this command would be in shell scripts, where it would be easier to use if it only output the actual output directory. The first line is redundant, as the user has already specified the simulation name. Also, simfactory is appending the <parbasename>, and assuming that such a directory exists and contains some useful data. Without parsing the parameter file and duplicating cactus logic, it cannot know where the actual data is. I think simfactory should just give the output-0000 directory, and leave it up to the user to figure out where to find the data in there. The attached patch implements this change. OK to apply? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1254> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Trac July 2013