Trac May 2015

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112 discussions

[Einstein Toolkit] #1716: Add a TRAC component for Jenkins
by Einstein Toolkit 22 May '15

22 May '15

#1716: Add a TRAC component for Jenkins -----------------------------------+---------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Server Infrastructure | Version: development version Keywords: | -----------------------------------+---------------------------------------- It would be useful to have a TRAC component for the Jenkins build and test system. Something like "Continuous Integration system". -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1716> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #796: Support https for einsteintoolkit.org
by Einstein Toolkit 22 May '15

22 May '15

#796: Support https for einsteintoolkit.org -------------------------------------+-------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit website | Version: Keywords: | -------------------------------------+-------------------------------------- To show our commitment to privacy and IT safety, we should enable https support for our web site. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/796> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1777: Abort CST before running configuration scripts in case of errors at that point
by Einstein Toolkit 22 May '15

22 May '15

#1777: Abort CST before running configuration scripts in case of errors at that point -------------------------+-------------------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: development version Keywords: | -------------------------+-------------------------------------------------- Abort CST before running configuration scripts in case of errors at that point https://bitbucket.org/cactuscode/cactus/pull-request/4/abort-cst-before- running-configuration/diff -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1777> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1773: Cactus adds non-existent directories to include path
by Einstein Toolkit 22 May '15

22 May '15

#1773: Cactus adds non-existent directories to include path --------------------+------------------------------------------------------- Reporter: knarf | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Cactus | Version: development version Keywords: | --------------------+------------------------------------------------------- Currently, THORN/src/include is unconditionally added to the compiler include paths, regardless of whether it exists or not. While this is not an error in general, newer compilers emit a warning for non-existent include directories. The patch in the merge requests adds the directory only if it exists. https://bitbucket.org/cactuscode/cactus/pull-request/11/dont-add-non- existing-thorn-include-paths/diff -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1773> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1506: compiling Cactus on Windows
by Einstein Toolkit 17 May '15

17 May '15

#1506: compiling Cactus on Windows --------------------------------+------------------------------------------- Reporter: jtao | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Cactus | Version: development version Keywords: compiling, windows | --------------------------------+------------------------------------------- Hi, In the process to create the cactusBSSN benchmark for SPEC, I worked with Mat from PGI(now NVIDIA) to help resolve some compilation issues on Windows. I don't have patches for each one of them, but attemptive solutions could be found in the email below. These are not critical issues but it would be good to be resolved to help future windows users if there is any. Regards, Jian Mathew COLGROVE wrote: > Hi Jian, > > I've been working on porting cactusBSSN to Windows. After working through some header file configuration, I encountered several undefined references. I've been able to work around some of them, but a few others I need some help with. > > 1) "STDOUT_FILENO" and "STDERR_FILENO" in Cactus/main/Warnlevel.c > These symbols are found in "unistd.h" which is not available on Windows. I just commented these lines out since I don't think this section is executed. Though, the proper fix would be to define then in > the cctk_Config.h file if not "HAVE_UNISTD_H" is not. The function isatty is defined in unistd.h. A conditional macro will be necessary for that function as well in this case. #if HAVE_UNISTD_H if (!isatty (STDOUT_FILENO)) val = ""; #endif > 2) "hypot" and "copysign" in Cactus/main/Complex.c > > Windows does support "hypot" and "copysign", however they spell them "_hypot" and "_copysign". To work around, I created two versions of each macro that use these symbols. I will probably do the same. > 3) "regexec", "regfree", and "regcomp" in Cactus/main/Parameters.c and Cactus/utils/misc.c > > Windows does not support these functions. We may be able to integrate a port from glibc into the benchmark but I would rather not. Since previous versions of Cactus did not used these symbols, can we use an older version other these files? As a matter of fact, Cactus includes files from the src of the GNU C library. You can find them under Your_Cactus/src/gnu. It is likely that you pre-configured Cactus on a linux box or other systems which provide the library. Cactus will then use the system default instead. To compiler regex.c getopt.c distributed with Cactus, you need to go to Your_Cactus/configs/spec/config-data/ and set both BUILD_GETOPT BUILD_REGEX to yes. # GNU stuff BUILD_GETOPT = yes BUILD_REGEX = yes This will solve #4 below as well. > 4) "getopt_long_only", "optarg", and "optind" in Cactus/main/ProcessCommandLine.c > > Again, there is no Windows equivalent for these symbols. We may be able to integrate something from http://gnuwin32.sourceforge.net/packages/libgw32c.htm, but I would rather not. Since previous versions of Cactus did not used these symbols, can we use an older version other this file? > > 5) "gethostname" and "gethostbyname" in Cactus/utils/Network.c > > Windows does have these functions but we'd need to link with a DLL which I'd rather not have to do (the user should have the option on how to link). Though, I think we'd be safe to remove these functions. Yes, the prototypes of gethostname and gethostbyname can be found in winsock2.h, and Cactus knows how to deal with them on Windows. --------------------------------------- Network.c : ... #elif defined HAVE_WINSOCK2_H #include <winsock2.h> #endif /* HAVE_WINSOCK2_H */ ... --------------------------------------- If linking DLL will be an issue, I would suggest you keep Util_GetHostName but make it a dummy function since Util_GetHostName serves as the interface to gethostname for Cactus. Regards, Jian -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1506> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1755: Problem with building on Ubuntu 14.04
by Einstein Toolkit 15 May '15

15 May '15

#1755: Problem with building on Ubuntu 14.04 -----------------------------------+---------------------------------------- Reporter: maxim.barkov@… | Owner: Type: defect | Status: new Priority: major | Milestone: ET_2014_11 Component: Cactus | Version: development version Keywords: MPI build | -----------------------------------+---------------------------------------- Hello, Following the instructions on the page: https://docs.einsteintoolkit.org/et-docs/Simplified_Tutorial_for_New_Users I failed to compile ET on the Ubuntu 14.04 In the file ubuntu.cfg paths to mpi libs or includes do not exist, The MPICH2 package is installed (sudo apt-get install mpich2) It could be better to change mpich to openmpi? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1755> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1764: Error with compilation of HWLOC
by Einstein Toolkit 15 May '15

15 May '15

#1764: Error with compilation of HWLOC -----------------------------------+---------------------------------------- Reporter: maxim.barkov@… | Owner: Type: defect | Status: new Priority: blocker | Milestone: Component: Other | Version: development version Keywords: HWLOC | -----------------------------------+---------------------------------------- I updated the ET nightly version. The configuration works fine on the local Ubuntu gcc PC, but it fails to compile at CFCA CRAY XC30 cluster with Intel environment. I do not see error message. {{{ Using configuration: test ModuleCmd_Switch.c(172):ERROR:152: Module 'PrgEnv-cray' is currently not loaded ModuleCmd_Switch.c(172):ERROR:152: Module 'PrgEnv-cray' is currently not loaded ModuleCmd_Switch.c(172):ERROR:152: Module 'PrgEnv-cray' is currently not loaded ModuleCmd_Switch.c(172):ERROR:152: Module 'PrgEnv-cray' is currently not loaded ModuleCmd_Switch.c(172):ERROR:152: Module 'PrgEnv-cray' is currently not loaded Reconfiguring test Writing configuration to: /work/barkovmm/ET/Cactus/configs/test/OptionList ModuleCmd_Switch.c(172):ERROR:152: Module 'PrgEnv-cray' is currently not loaded Cactus - version: 4.2.3 Reconfiguring test. Using configuration options from configure line Setting fds to '4,5 -j --' End of options from configure line Adding configuration options from '/work/barkovmm/ET/Cactus/configs/test/OptionList'... Setting VERSION to 'cfca-2015-04-03' Setting CPP to 'cpp' Setting FPP to 'cpp' Setting CC to 'cc' Setting CXX to 'CC' Setting F77 to 'ftn' Setting F90 to 'ftn' Setting CPPFLAGS to '-g' Setting FPPFLAGS to '-g -traditional' Setting CFLAGS to '-g -debug all -traceback -xHost -align -std=gnu99 -ansi-alias' Setting CXXFLAGS to '-g -debug all -traceback -xHost -align -std=gnu++0x -ansi-alias -D__builtin_signbit=__signbit' Setting F77FLAGS to '-g -debug all -traceback -xHost -align -pad -safe_cray_ptr' Setting F90FLAGS to '-g -debug all -traceback -xHost -align -pad -safe_cray_ptr' Setting C_LINE_DIRECTIVES to 'yes' Setting F_LINE_DIRECTIVES to 'yes' Setting VECTORISE to 'yes' Setting VECTORISE_ALIGNED_ARRAYS to 'no' Setting VECTORISE_INLINE to 'no' Setting DEBUG to 'no' Setting CPP_DEBUG_FLAGS to '-DCARPET_DEBUG' Setting FPP_DEBUG_FLAGS to '-DCARPET_DEBUG' Setting C_DEBUG_FLAGS to '' Setting CXX_DEBUG_FLAGS to '' Setting F77_DEBUG_FLAGS to '-check bounds -check format' Setting F90_DEBUG_FLAGS to '-check bounds -check format' Setting OPTIMISE to 'yes' Setting CPP_OPTIMISE_FLAGS to '' Setting FPP_OPTIMISE_FLAGS to '' Setting C_OPTIMISE_FLAGS to '-O2 -no-prec-div' Setting CXX_OPTIMISE_FLAGS to '-Ofast' Setting F77_OPTIMISE_FLAGS to '-Ofast' Setting F90_OPTIMISE_FLAGS to '-Ofast' Setting C_NO_OPTIMISE_FLAGS to '-O0' Setting CXX_NO_OPTIMISE_FLAGS to '-O0' Setting F77_NO_OPTIMISE_FLAGS to '-O0' Setting F90_NO_OPTIMISE_FLAGS to '-O0' Setting PROFILE to 'no' Setting CPP_PROFILE_FLAGS to '' Setting FPP_PROFILE_FLAGS to '' Setting C_PROFILE_FLAGS to '-pg' Setting CXX_PROFILE_FLAGS to '-pg' Setting F77_PROFILE_FLAGS to '-pg' Setting F90_PROFILE_FLAGS to '-pg' Setting OPENMP to 'yes' Setting CPP_OPENMP_FLAGS to '-openmp' Setting FPP_OPENMP_FLAGS to '-fopenmp' Setting C_OPENMP_FLAGS to '-openmp' Setting CXX_OPENMP_FLAGS to '-openmp' Setting F77_OPENMP_FLAGS to '-openmp' Setting F90_OPENMP_FLAGS to '-openmp' Setting WARN to 'yes' Setting CPP_WARN_FLAGS to '' Setting FPP_WARN_FLAGS to '-Wall' Setting C_WARN_FLAGS to '' Setting CXX_WARN_FLAGS to '' Setting F90_WARN_FLAGS to '' Setting F77_WARN_FLAGS to '' Setting BLAS_DIR to 'NO_BUILD' Setting BOOST_DIR to 'BUILD' Setting FFTW_DIR to '/opt/fftw/3.3.4.0/haswell/' Setting GSL_DIR to '/work/ap/GSL/gsl-1.15/intel/' Setting GSL_INC_DIRS to '/work/ap/GSL/gsl-1.15/intel/include' Setting GSL_LIB_DIRS to '/work/ap/GSL/gsl-1.15/intel/lib' Setting HDF5_DIR to '/opt/cray/hdf5/1.8.13' Setting HWLOC_DIR to 'BUILD' Setting LAPACK_DIR to 'NO_BUILD' Setting MPI_DIR to 'NONE' Setting OPENBLAS_DIR to 'NO_BUILD' Setting OPENBLAS_LIBS to '' Setting PAPI_DIR to '/opt/cray/papi/5.3.2' Setting PETSC_DIR to '/opt/cray/petsc/3.5.1.0/real/INTEL/140/haswell/' Setting PTHREADS to 'yes' Setting ZLIB_DIR to 'BUILD' End of options from '/work/barkovmm/ET/Cactus/configs/test/OptionList'. }}} {{{ checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' yes checking for sysctl... icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' yes checking for sysctlbyname... no checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working _syscall3... no checking for KERRIGHED... no checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... yes checking numaif.h presence... yes checking for numaif.h... yes checking for numa_available in -lnuma... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... no checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml linux x86 checking components to build as plugins... checking for X... no ### ### Configuring hwloc documentation ### checking if this is a developer build... no (doxygen generation is optional) checking for doxygen... /usr/bin/doxygen checking for pdflatex... no checking for makeindex... no checking for fig2dev... no checking for gs... /usr/bin/gs checking for epstopdf... no checking if can build doxygen docs... no checking for a sed that does not truncate output... /usr/bin/sed checking if the sed -i option requires an argument... no checking for w3m... /usr/bin/w3m checking for lynx... no checking if can build top-level README... yes checking if will build doxygen docs... no checking if will install doxygen docs... yes checking whether to enable "picky" compiler mode... no (default) ### ### Configuring hwloc command line utilities ### checking for wchar_t... yes checking for putwc... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for setlocale... (cached) yes checking for uselocale... yes checking xlocale.h usability... yes checking xlocale.h presence... yes checking for xlocale.h... yes checking for setlocale... (cached) yes checking for uselocale... (cached) yes checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking for nl_langinfo... yes checking termcap support using ncurses and ... no checking termcap support using ncurses and -ltermcap... no checking termcap support using ncurses and -lncursesw... yes checking whether diff accepts -u... -u checking whether diff accepts -w... -w ### ### Configuring hwloc tests ### checking for pthread_self in -lpthread... yes checking whether numa_bitmask_alloc is declared... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes checking for ibv_open_device in -libverbs... no checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking for xmllint... xmllint checking for bunzip2... bunzip2 checking if CXX works... yes checking whether diff accepts -u... -u ### ### Performing final hwloc configuration ### checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64 -unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... CC -E checking for ld used by CC... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance icpc: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance checking whether the CC linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for CC option to produce PIC... -fPIC -DPIC checking if CC PIC flag -fPIC -DPIC works... yes checking if CC static flag -static works... yes checking if CC supports -c -o file.o... yes checking if CC supports -c -o file.o... (cached) yes checking whether the CC linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/doxygen-config.cfg config.status: creating utils/Makefile config.status: creating hwloc.pc config.status: creating tests/Makefile config.status: creating tests/linux/Makefile config.status: creating tests/linux/gather/Makefile config.status: creating tests/xml/Makefile config.status: creating tests/ports/Makefile config.status: creating tests/rename/Makefile config.status: creating tests/linux/hwloc-gather-topology config.status: creating tests/linux/gather/test-gather-topology.sh config.status: creating tests/linux/test-topology.sh config.status: creating tests/xml/test-topology.sh config.status: creating tests/wrapper.sh config.status: creating utils/hwloc-assembler-remote config.status: creating utils/test-hwloc-annotate.sh config.status: creating utils/test-hwloc-assembler.sh config.status: creating utils/test-hwloc-calc.sh config.status: creating utils/test-hwloc-distances.sh config.status: creating utils/test-hwloc-distrib.sh config.status: creating utils/test-hwloc-info.sh config.status: creating utils/test-hwloc-ls.sh config.status: creating utils/test-fake-plugin.sh config.status: creating include/private/autogen/config.h config.status: creating include/hwloc/autogen/config.h config.status: linking src/topology-solaris.c to tests/ports/topology- solaris.c config.status: linking src/topology-solaris-chiptype.c to tests/ports /topology-solaris-chiptype.c config.status: linking src/topology-aix.c to tests/ports/topology-aix.c config.status: linking src/topology-osf.c to tests/ports/topology-osf.c config.status: linking src/topology-windows.c to tests/ports/topology- windows.c config.status: linking src/topology-darwin.c to tests/ports/topology- darwin.c config.status: linking src/topology-freebsd.c to tests/ports/topology- freebsd.c config.status: linking src/topology-netbsd.c to tests/ports/topology- netbsd.c config.status: linking src/topology-hpux.c to tests/ports/topology-hpux.c config.status: linking src/topology-bgq.c to tests/ports/topology-bgq.c config.status: linking src/topology-opencl.c to tests/ports/topology- opencl.c config.status: linking src/topology-cuda.c to tests/ports/topology-cuda.c config.status: linking src/topology-nvml.c to tests/ports/topology-nvml.c config.status: linking src/topology-gl.c to tests/ports/topology-gl.c config.status: executing depfiles commands config.status: executing chmoding-scripts commands config.status: executing libtool commands ----------------------------------------------------------------------------- Hwloc optional build support status (more details can be found above): Probe / display I/O devices: no Graphical output (Cairo): no XML input / output: basic libnuma memory support: no Plugin support: no ----------------------------------------------------------------------------- hwloc: Building... Making all in src CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC misc.lo CC base64.lo icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC topology-xml-nolibxml.lo icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC topology-linux.lo icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC topology-x86.lo icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CCLD libhwloc.la Making all in include Making all in utils CC lstopo_no_graphics-lstopo.o CC lstopo_no_graphics-lstopo-color.o CC lstopo_no_graphics-lstopo-text.o CC lstopo_no_graphics-lstopo-draw.o CC lstopo_no_graphics-lstopo-fig.o CC lstopo_no_graphics-lstopo-xml.o CC hwloc-annotate.o CC hwloc-assembler.o icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC hwloc-calc.o CC hwloc-bind.o CC hwloc-distances.o CC hwloc-distrib.o icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC hwloc-info.o icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CC hwloc-ps.o icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' Creating hwloc.7 man page... Creating lstopo.1 man page... Creating hwloc-annotate.1 man page... Creating hwloc-bind.1 man page... Creating hwloc-calc.1 man page... Creating hwloc-distances.1 man page... Creating hwloc-distrib.1 man page... Creating hwloc-info.1 man page... Creating hwloc-ps.1 man page... Creating hwloc-assembler.1 man page... Creating hwloc-assembler-remote.1 man page... icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' Creating hwloc-gather-topology.1 man page... CCLD hwloc-annotate CCLD hwloc-assembler CCLD hwloc-distances icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CCLD hwloc-distrib CCLD hwloc-ps icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CCLD hwloc-calc icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' CCLD hwloc-bind ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' make[5]: *** [hwloc-assembler] Error 1 make[5]: *** Waiting for unfinished jobs.... make[5]: *** [hwloc-annotate] Error 1 icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' make[5]: *** [hwloc-distances] Error 1 icc: command line warning #10121: overriding '-xCORE-AVX2' with '-xHost' ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' make[5]: *** [hwloc-distrib] Error 1 ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' make[5]: *** [hwloc-ps] Error 1 ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' make[5]: *** [hwloc-calc] Error 1 ld: attempted static link of dynamic object `/work/barkovmm/ET/Cactus/configs/cid_rg/scratch/build/hwloc/hwloc-1.7.2/src/.libs/libhwloc.so' make[5]: *** [hwloc-bind] Error 1 make[4]: *** [all-recursive] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/work/barkovmm/ET/Cactus/configs/cid_rg/lib/libthorn_hwloc.a] Error 2 make: *** [cid_rg] Error 2 }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1764> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1775: Add Boost to ET
by Einstein Toolkit 15 May '15

15 May '15

#1775: Add Boost to ET -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- There was a request to support Boost in the ET. I suggest to add our Boost thorn, in the same way that we currently support PETSc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1775> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1776: Wrong mpirun copied to utilities directory in MPI thorn
by Einstein Toolkit 13 May '15

13 May '15

#1776: Wrong mpirun copied to utilities directory in MPI thorn -----------------------------------+---------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Other | Version: development version Keywords: ExternalLibraries/MPI | -----------------------------------+---------------------------------------- On Mac OS, if I set MPI_DIR=BUILD in order to build OpenMPI using the MPI thorn, Cactus should copy the built version of mpirun into exe/<config>. However, if it finds one in /usr/local/bin, it copies that one instead. NB: to compile OpenMPI, you need gnu99 or later in CFLAGS, as OpenMPI needs the 'asm' directive, which is a GNU extension. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1776> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1763: Several users unsubscribed from mailing lists
by Einstein Toolkit 11 May '15

11 May '15

#1763: Several users unsubscribed from mailing lists ----------------------+----------------------------------------------------- Reporter: hinder | Owner: Type: defect | Status: new Priority: critical | Milestone: Component: Other | Version: development version Keywords: | ----------------------+----------------------------------------------------- It looks like I have been accidentally unsubscribed from several ET mailing lists. I received no unsubscription notification; I just stopped receiving the mails. The last posts I have from the users and tickets lists are from 26.03.2015. Eloisa and Oleg apparently also had this problem. I suspect others have also been unsubscribed, so it would be good to look into this and figure out what went wrong, and re-subscribe people. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1763> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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