Trac December 2016

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[Einstein Toolkit] #1861: NaNChecker: do not report missing storage when checking "all" variables
by Einstein Toolkit 01 Jan '17

01 Jan '17

#1861: NaNChecker: do not report missing storage when checking "all" variables -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: Formaline | -----------------------------------+---------------------------------------- pull request at https://bitbucket.org/cactuscode/cactusutils/pull- requests/6/nanchecker-do-not-report-missing-storage/diff removes lots of output about variables having no storage if checking all variables for NaN is requested. Since "all" variables means "all that could be defined" and not "all that are turned on" there is always lots of clutter when "all" is used. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1861> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1979: EOS_Omni: read add option to read EOS table on a single process
by Einstein Toolkit 01 Jan '17

01 Jan '17

#1979: EOS_Omni: read add option to read EOS table on a single process ----------------------+----------------------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Other | Version: development version Keywords: EOS_Omni | ----------------------+----------------------------------------------------- This re-activates the functionality from e7eb9a5 which was accidentally removed in the meantime. Pull request is in https://bitbucket.org/einsteintoolkit/einsteineos/pull-requests/1 /eos_omni-read-add-option-to-read-eos-table/diff This is a bugfix since the parameters for the functionality were never removed, this is minor since to code works perfectly fine as is, it is just slower (and ignores those parameters). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1979> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1977: CarpetIOHDF5: fix numbering of files when there are fewer than ioprocs than mpi ranks, create output directory on all ranks
by Einstein Toolkit 01 Jan '17

01 Jan '17

#1977: CarpetIOHDF5: fix numbering of files when there are fewer than ioprocs than mpi ranks, create output directory on all ranks --------------------+------------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: Carpet | Version: development version Keywords: | --------------------+------------------------------------------------------- The first patch makes it possible to read the generated output files in VisIt without having to rename them since they are now (again) names var.file_0.h5 var.file_1.h5 ... var.file_<nioprocs>.h5 rather than eg var.file_0.h5 var.file_4.h5. The second one matches what out_vars does. Pull request is at: https://bitbucket.org/eschnett/carpet/pull-requests/15/carpetiohdf5-minor- fixes/diff -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1977> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1976: CarpetIOHDF5: add option to have one output file per process
by Einstein Toolkit 01 Jan '17

01 Jan '17

#1976: CarpetIOHDF5: add option to have one output file per process -------------------------+-------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: enhancement | Status: new Priority: major | Milestone: Component: Carpet | Version: development version Keywords: | -------------------------+-------------------------------------------------- This is useful when running on systems where many files slow down file access (ie lustre file systems) and where there are many hdf5 output files per MPI rank. The code combines all output into a file $parfile.h5 which is currently hard-coded. https://bitbucket.org/eschnett/carpet/pull-requests/14/carpetiohdf5-add- option-to-have-one-output/diff -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1976> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1996: Formaline can deadlock
by Einstein Toolkit 28 Dec '16

28 Dec '16

#1996: Formaline can deadlock -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: critical | Milestone: ET_2016_11 Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- I found that Formaline recently started to deadlock when creating git repositories. The problem was that {{{cat}}} was called without arguments. This patch corrects the problem: Change line 382 from {{{ cat $(filter-out '$(TARBALL_DIR)/config-Cactus.files', $?) && \ }}} to {{{ cat /dev/null $(filter-out '$(TARBALL_DIR)/config- Cactus.files', $?) && \ }}} i.e. add a {{{/dev/null}}} there. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1996> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1998: Typo on ET website
by Einstein Toolkit 21 Dec '16

21 Dec '16

#1998: Typo on ET website --------------------------------------+------------------------------------- Reporter: figura.antonio@… | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit website | Version: development version Keywords: | --------------------------------------+------------------------------------- The last paragraph in https://einsteintoolkit.org/ reports that the fourteenth release of the Einstein Toolkit has been issued on June 2016, instead of November 2016. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1998> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1959: Rename Root Directory "EinsteinToolkit"
by Einstein Toolkit 12 Dec '16

12 Dec '16

#1959: Rename Root Directory "EinsteinToolkit" -------------------------+-------------------------------------------------- Reporter: anonymous | Owner: Type: enhancement | Status: new Priority: unset | Milestone: Component: Other | Version: development version Keywords: | -------------------------+-------------------------------------------------- Upon downloading a fresh ET, I was reminded once again that there remain some vestiges of the past: the root directory is still named "Cactus". Although most of the code within the ET currently depends on the Cactus infrastructure, I think we should have a mindset more inclusive to other infrastructures moving forward. There is no "one size fits all" in NR, after all. To this end, I propose to rename the root directory "EinsteinToolkit". -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1959> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #394: Testsuite log file should contain more information
by Einstein Toolkit 12 Dec '16

12 Dec '16

#394: Testsuite log file should contain more information -------------------------+-------------------------------------------------- Reporter: hinder | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: testsuites | -------------------------+-------------------------------------------------- It is useful to look at the testsuite log file for information about how the tests were run. For example, which compiler was used, and with what compiler options. We need to balance this against providing information which will always change, making diffs hard to read. The most extreme case would be to output all make variables. Maybe better would be to output CC, CFLAGS, CXX, etc. Another option would be to parse these and say "intel compiler", "gcc", "pgi" etc. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/394> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1991: IllinoisGRMHD's magnetizedTOV.par test uses too much memory
by Einstein Toolkit 07 Dec '16

07 Dec '16

#1991: IllinoisGRMHD's magnetizedTOV.par test uses too much memory -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: development version Keywords: IllinoisGRMHD | -----------------------------------+---------------------------------------- It requests ~1GB of memory which is too much for a test case I think. Simple changes to reduce memory consumption is setting {{{ CoordBase::dx = 1.5 CoordBase::dy = 1.5 CoordBase::dz = 1.5 CarpetRegrid2::num_levels_1 = 2 }}} down from {{{ CoordBase::dx = 1.0 CoordBase::dy = 1.0 CoordBase::dz = 1.0 CarpetRegrid2::num_levels_1 = 4 }}} which should bring memory consumption down to ~150MB which is much better eg on the Jenkins test slaves. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1991> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1981: Configuration files for MARCONI.
by Einstein Toolkit 06 Dec '16

06 Dec '16

#1981: Configuration files for MARCONI. -------------------------+-------------------------------------------------- Reporter: bentivegna | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: development version Keywords: | -------------------------+-------------------------------------------------- I have made the simfactory configuration files for the Marconi system: http://www.hpc.cineca.it/hardware/marconi available via this pull request: https://bitbucket.org/simfactory/simfactory2/pull-requests/13 /configuration-files-for-cinecas-marconi/diff Any comment or contribution is welcome. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1981> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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