Trac August 2018

trac@lists.einsteintoolkit.org

1 participants
59 discussions

[Einstein Toolkit] #2186: PUGH: support zero sized grid arrays
by Einstein Toolkit 03 Oct '18

03 Oct '18

#2186: PUGH: support zero sized grid arrays ---------------------------------+----------------------------------- Reporter: Roland Haas | Type: defect Status: new | Priority: minor Milestone: | Component: EinsteinToolkit thorn Version: development version | Keywords: PUGH ---------------------------------+----------------------------------- if a grid array has size 0 we ignore it during communication by setting its ghost size and overlap region to zero, cctk_lsh will show up a zero as well This fixes the bug that Erik observed in https://bitbucket.org/cactuscode/cactustest/commits/8a6601f about 14 years ago. As far as I can tell this test has been failing since then and only was not caught b/c the testing system actually does not look at the Cactus return code. Pull request is here: https://bitbucket.org/cactuscode/cactuspugh/pull- requests/2/pugh-support-zero-sized-grid-arrays/diff -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2186> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 4

[Einstein Toolkit] #2171: PAPI Compile Issues with Intel 19 beta on Ubuntu 18.04
by Einstein Toolkit 03 Oct '18

03 Oct '18

#2171: PAPI Compile Issues with Intel 19 beta on Ubuntu 18.04 ---------------------------------+-------------------- Reporter: zachetie@… | Type: defect Status: new | Priority: unset Milestone: | Component: Other Version: development version | Keywords: ---------------------------------+-------------------- I get this error message when attempting to compile the latest ETK master (Jul 27, 2018) with the default ThornList using Intel 19.0.0.070 20180524 on Ubuntu 18.04: PAPI: Building... In file included from pfmlib_common.c(32): /usr/include/stdlib.h(140): error: identifier "_Float32" is undefined extern _Float32 strtof32 (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(146): error: identifier "_Float64" is undefined extern _Float64 strtof64 (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(158): error: identifier "_Float32x" is undefined extern _Float32x strtof32x (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(164): error: identifier "_Float64x" is undefined extern _Float64x strtof64x (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(233): error: identifier "_Float32" is undefined _Float32 __f) ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(239): error: identifier "_Float64" is undefined _Float64 __f) ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(251): error: identifier "_Float32x" is undefined _Float32x __f) ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(257): error: identifier "_Float64x" is undefined _Float64x __f) ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(316): error: identifier "_Float32" is undefined extern _Float32 strtof32_l (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(323): error: identifier "_Float64" is undefined extern _Float64 strtof64_l (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(337): error: identifier "_Float32x" is undefined extern _Float32x strtof32x_l (const char *__restrict __nptr, ^ In file included from pfmlib_common.c(32): /usr/include/stdlib.h(344): error: identifier "_Float64x" is undefined extern _Float64x strtof64x_l (const char *__restrict __nptr, ^ compilation aborted for pfmlib_common.c (code 2) -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2171> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 2

[Einstein Toolkit] #2185: PAPI's compilation produces warnings
by Einstein Toolkit 03 Oct '18

03 Oct '18

#2185: PAPI's compilation produces warnings ---------------------------------+----------------------------------- Reporter: Roland Haas | Type: defect Status: new | Priority: minor Milestone: | Component: EinsteinToolkit thorn Version: development version | Keywords: PAPI ---------------------------------+----------------------------------- PAPI's build procedure currently contains two failing parts, one that shows up as error messages along the lines of "libthorn_PAPI.a_tests cannot be build" which is caused by Cactus setting a NAME variable in MAKEFLAGS which overrides what PAPI's Makefile wants to use and once that is finished, the tests actually fail to run since eg OpenMP libraries are missing. The attached patch gets rid of NAME and builds only the parts we need. The $(pwd)/libpfm4/lib/libpfm.a path is copied from the Makefile (Rules.pfm4_pe I believe). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2185> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 3

[Einstein Toolkit] #2190: make sim-ThornGuide fails
by Einstein Toolkit 03 Oct '18

03 Oct '18

#2190: make sim-ThornGuide fails ---------------------------------+-------------------- Reporter: Roland Haas | Type: defect Status: new | Priority: minor Milestone: | Component: Cactus Version: development version | Keywords: ---------------------------------+-------------------- One cannot build the ThornGuide using the current ET master (90d12c0b): {{{ rhaas@ekohaes8:.../cactus/ET_vanilla$ make VERBOSE=yes sim-ThornGuide echo ________________________________________________________________________ ________________________________________________________________________ Creating ThornGuide for configuration sim cd /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim; \ mkdir -p doc rm -rf /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build mkdir /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build if test -r /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/ThornList ; then \ cd /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build; \ make -f /data/rhaas/postdoc/gr/cactus/ET_vanilla/doc/ThornGuide/Makefile THORNLIST=/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/ThornList MASTER_FILE=ThornGuide-sim DOCBUILDDIR=/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build; \ if test -e "/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build /ThornGuide-sim.pdf"; then \ mv "/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build /ThornGuide-sim.pdf" /data/rhaas/postdoc/gr/cactus/ET_vanilla/doc /ThornGuide-sim.pdf; \ echo " ThornGuide-sim.pdf created in doc directory."; \ echo " Done."; \ fi \ else \ echo " Error: /data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/ThornList not found."; \ fi make[1]: Entering directory '/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build' THORN_DEPENDENCIES=`/usr/bin/perl -s /data/rhaas/postdoc/gr/cactus/ET_vanilla/lib/sbin/ThornList.pl -arrangements_dir=/data/rhaas/postdoc/gr/cactus/ET_vanilla/arrangements -thornlist=/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/ThornList` Gathering documentation from thorn ccl files Processing.... param.ccl.... /usr/bin/perl -s /data/rhaas/postdoc/gr/cactus/ET_vanilla/lib/sbin/ParamLatex.pl -cctk_home=/data/rhaas/postdoc/gr/cactus/ET_vanilla -directory=/data/rhaas/postdoc/gr/cactus/ET_vanilla/arrangements -thornlist=/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/ThornList -outdir=./ -section -grouping=bythorn -sort=scope > LOG_PARAMLATEX_MSGS 2>&1 make[1]: *** [/data/rhaas/postdoc/gr/cactus/ET_vanilla/doc/ThornGuide/Makefile:91: ThornGuide-sim.tex] Error 255 make[1]: Leaving directory '/data/rhaas/postdoc/gr/cactus/ET_vanilla/configs/sim/doc/build' }}} and the LOG file contains {{{ Undefined subroutine &main::parse_ccl called at /data/rhaas/postdoc/gr/cactus/ET_vanilla/lib/sbin/parameter_parser.pl line 46. CTThorns }}} The line was introduced in git hash 618ef008 "Speedup branch implements caching of CCL files." about 1.25 years ago. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2190> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 4

[Einstein Toolkit] #2191: parameter file download seems wrong in Gallery: Binary black hole GW150914
by Einstein Toolkit 03 Oct '18

03 Oct '18

#2191: parameter file download seems wrong in Gallery: Binary black hole GW150914 ---------------------------------+-------------------- Reporter: anonymous | Type: defect Status: new | Priority: unset Milestone: | Component: Other Version: development version | Keywords: ---------------------------------+-------------------- I use curl -Lf http://einsteintoolkit.org/gallery/bbh/GW150914.rpar -o par/GW150914.rpar to down the parameter file and run the simulation, it give me error like: Error: Error while executing parameter file script /home/someone/simulations/GW150914_1/output-0000/GW150914.rpar -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2191> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 3

[Einstein Toolkit] #2143: trac statistics link is broken
by Einstein Toolkit 03 Oct '18

03 Oct '18

#2143: trac statistics link is broken -------------------------+--------------------------------- Reporter: Roland Haas | Owner: Steven R. Brandt Type: defect | Status: assigned Priority: minor | Milestone: Component: Other | Version: development version Keywords: trac | -------------------------+--------------------------------- The link "Ticket statistics" ie https://trac.einsteintoolkit.org/stats/tickets on the front page of trac leads to an error page {{{ No handler matched request to /stats/tickets }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2143> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 1

[Einstein Toolkit] #2115: supermike II fails to compile
by Einstein Toolkit 05 Sep '18

05 Sep '18

#2115: supermike II fails to compile ------------------------+--------------------------------------------------- Reporter: rhaas | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: development version Keywords: | ------------------------+--------------------------------------------------- The current simfactory files fail to compile the ET on SuperMike II at LSU HPC. One gets: {{{ In file included from /home/rhaas/ET_vanilla/arrangements/CactusUtils/Vectors/src/vectors.cc(1): /home/rhaas/ET_vanilla/arrangements/CactusUtils/Vectors/src/vectors.h(877): error: invalid type for defaulted constructor vmask(vmask &&) = default; ^ }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2115> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 9

[Einstein Toolkit] #2172: Test "Binary black hole GW150914" example
by Einstein Toolkit 03 Sep '18

03 Sep '18

#2172: Test "Binary black hole GW150914" example -------------------------------------+--------------------------------- Reporter: Roland Haas | Owner: SCupp Type: task | Status: assigned Priority: major | Milestone: ET_2018_08 Component: EinsteinToolkit website | Version: development version Keywords: | -------------------------------------+--------------------------------- Before each release, check that http://einsteintoolkit.org/gallery/bbh/index.html still works and produces correct output. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2172> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 3

[Einstein Toolkit] #2181: update OpenMPI tarball to 1.10.7
by Einstein Toolkit 03 Sep '18

03 Sep '18

#2181: update OpenMPI tarball to 1.10.7 ---------------------------------+----------------------------------- Reporter: Roland Haas | Type: defect Status: new | Priority: major Milestone: | Component: EinsteinToolkit thorn Version: development version | Keywords: MPI ---------------------------------+----------------------------------- Compiling on bethe (a private workstation at Caltech that is however part of http://einsteintoolkit.org/testsuite_results/index.php) fails due to the OpenMP source code not (anymore) being compatible with ibverbs library installed on the system (leaving aside the question why a single workstation would have infiniband libraries installed in the first place). Updating to 1.10.7 fixes this. Attached please find a patch (sans tarball which can be downloaded from here https://www.open-mpi.org/software/). Using these changes lets me compile MPI successfully and eventually builds the ET as well. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2181> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 4

[Einstein Toolkit] #2188: running on wheeler fails with error messages from MPI
by Einstein Toolkit 03 Sep '18

03 Sep '18

#2188: running on wheeler fails with error messages from MPI -------------------------+--------------------------------- Reporter: Roland Haas | Owner: Erik Schnetter Type: defect | Status: assigned Priority: major | Milestone: ET_2018_08 Component: SimFactory | Version: development version Keywords: | -------------------------+--------------------------------- Trying to run on wheeler fails with lengthy error messages from MPI even when using a single MPI rank. I attach a sample error file from the gaussian test in the testsuite. Wheeler is a private machine at Caltech so if this cannot be fixed I would remove it from the list of machines shown on http://einsteintoolkit.org/testsuite_results/index.php . Erik since you maintained wheeler's files and the machine files point to an MPI stack in your $HOME, do you want to look into this? Otherwise I can set up a machine setup using the software stack used by SpEC (which sees much more regular use on wheeler) but that will likely not use the same set of modern compilers and other software that your setup uses, or we can remove wheeler from the list of officially supported machines for this release. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/2188> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

1 4

2026

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

Trac August 2018