November 2021 - Trac - lists.einsteintoolkit.org

#2043: new thorn for initial data (Hydro_RNS)
by Roland Haas 18 Nov '21

18 Nov '21

#2043: new thorn for initial data (Hydro_RNS) Reporter: Roberto De Pietri Status: resolved Milestone: Version: development version Type: enhancement Priority: minor Component: Other Changes (by Roland Haas): status: resolved (was new) The LSU and Parma groups used for publications and contributed to the development of the thorn the generate initial data for Rotating-Neutron-Star RNS based on Nik Stergioulas code (http://www.gravity.phys.uwm.edu/rns/) which constructs models of rapidly rotating, relativistic, compact stars using tabulated equations of state which are supplied by the user or polytqopic EOS. The code was widely used in conjunction with the Whisky code and more recently with GRHydro. The relevant code can be found here: [https://bitbucket.org/GravityPR/prthorns/src] I'd like another developer to have a look and give input. Once/If this is deemed ok to be included on technical grounds, we will add the necessary documentation. Test suites and example are already present. **Keyword:** parma -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2043/new-thorn-for-ini…

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#2043: new thorn for initial data (Hydro_RNS)
by Roland Haas 18 Nov '21

18 Nov '21

#2043: new thorn for initial data (Hydro_RNS) Reporter: Roberto De Pietri Status: new Milestone: Version: development version Type: enhancement Priority: minor Component: Other Comment (by Roland Haas): Applied as git hash [8a19ba52](https://bitbucket.org/einsteintoolkit/einsteininitialdata/commits… "Add Hydro\_RNSID" of [einsteininitialdata](https://bitbucket.org/einsteintoolkit/einsteininitiald… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2043/new-thorn-for-ini…

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#2043: new thorn for initial data (Hydro_RNS)
by Roland Haas 18 Nov '21

18 Nov '21

#2043: new thorn for initial data (Hydro_RNS) Reporter: Roberto De Pietri Status: new Milestone: Version: development version Type: enhancement Priority: minor Component: Other Comment (by Roland Haas): Compared to what is in the ET as of git hash [dfd2be34](https://bitbucket.org/einsteintoolkit/einsteininitialdata/commits… "ReadInterpolate: documnetation fixes" of [einsteininitialdata](https://bitbucket.org/einsteintoolkit/einsteininitiald… the differences in Hydro\_RNS \(git hash [cef42e5](https://bitbucket.org/GravityPR/prthorns/src/master/Hydro_RNSID//c… "Capitalisation Error" of \[\]\([https://bitbucket.org/GravityPR/prthorns/src/master/Hydro\_RNSID/](https://bitbucket.org/GravityPR/prthorns/src/master/Hydro_RNSID/)) \) seem to be that the latter supports a perturbation. Using instead git hash [f788d35](https://bitbucket.org/GravityPR/prthorns/src/master/Hydro_RNSID//c… "Allign to ET version" of \[\]\([https://bitbucket.org/GravityPR/prthorns/src/master/Hydro\_RNSID/\)](https://bitbucket.org/GravityPR/prthorns/src/master/Hydro_RNSID/)) they are identical up to some text formatting and GRHydro support. This ticket should be closed. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2043/new-thorn-for-ini…

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#2469: None of the thorns in WVUThorns_Diagnostics have documentation
by Roland Haas 18 Nov '21

18 Nov '21

#2469: None of the thorns in WVUThorns_Diagnostics have documentation Reporter: Roland Haas Status: new Milestone: ET_2021_05 Version: Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Is there progress on documentation for the remaining 3 thorns: * particle\_tracerET * Seed\_Magnetic\_Fields\_BNS ‌ -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2469/none-of-the-thorn…

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#2551: include RePriMand in the ET
by Wolfgang Kastaun 18 Nov '21

18 Nov '21

#2551: include RePriMand in the ET Reporter: Roland Haas Status: open Milestone: ET_2021_11 Version: development version Type: enhancement Priority: major Component: Comment (by Wolfgang Kastaun): I’ve been collecting commits in the development repo \(In the public repo I’d like a condensed history meaningful to users\), including the tex documentation from the pull request. I’ll push to public today. I also went through the review comments \(very useful, thanks again\). I have commented inside the pull request on some concerns that are non-issues as far as I can tell. The rest will be addressed in today's push. Due to time constraints, for the time being I will not fix all the error messages that should include the offending numbers in the message. This will probably go in the next release, which will also provide a TOV solver. Hope this is ok for the current ET release. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2551/include-reprimand…

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#1738: Update requirements documentation for Cactus
by Roland Haas 17 Nov '21

17 Nov '21

#1738: Update requirements documentation for Cactus Reporter: Ian Hinder Status: resolved Milestone: Version: development version Type: enhancement Priority: minor Component: Cactus Changes (by Roland Haas): status: resolved (was open) The Cactus User Guide has a section "Required software" which lists the software needed for Cactus. I think this should list the various language versions which are needed. For example, we could say (if this is the case) that Cactus requires C99 and C++98 or later. The page probably also should be updated to replace SVN with Git. **Keyword:** documentation -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1738/update-requiremen…

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#1738: Update requirements documentation for Cactus
by Roland Haas 17 Nov '21

17 Nov '21

#1738: Update requirements documentation for Cactus Reporter: Ian Hinder Status: open Milestone: Version: development version Type: enhancement Priority: minor Component: Cactus Comment (by Roland Haas): Should be fixed as of git hash [28bbb670](https://bitbucket.org/cactuscode/cactus/commits/28bbb670015e43811… "Cactus: document required C and C\+\+ versions" of [cactus](https://bitbucket.org/cactuscode/cactus) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1738/update-requiremen…

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#1278: Handle inf and nan in parameter file parser
by Roland Haas 17 Nov '21

17 Nov '21

#1278: Handle inf and nan in parameter file parser Reporter: Erik Schnetter Status: new Milestone: Version: Type: bug Priority: minor Component: Cactus Comment (by Roland Haas): @{557058:1671c5c3-29cc-4e83-9850-a152d33a6235} maybe revisit this for piraha? -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1278/handle-inf-and-na…

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#1278: Handle inf and nan in parameter file parser
by Roland Haas 17 Nov '21

17 Nov '21

#1278: Handle inf and nan in parameter file parser Reporter: Erik Schnetter Status: new Milestone: Version: Type: bug Priority: minor Component: Cactus Changes (by Roland Haas): assignee: Steven R. Brandt (was ) responsible: [] (was ) The test case in CactusTest/TestPar fails because inf is not recognised as number. **Keyword:** -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/1278/handle-inf-and-na…

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#2512: Enable detection of `attribute(pure)`
by Roland Haas 17 Nov '21

17 Nov '21

#2512: Enable detection of `attribute(pure)` Reporter: Erik Schnetter Status: new Milestone: Version: development version Type: proposal Priority: minor Component: Cactus Comment (by Roland Haas): I will re-enable `CCTK_ATTRIBUTE_PURE` shortly after the 2021\_11 release so that we can test if this breaks anything. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2512/enable-detection-…

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#2518: retire BlueGene/Q support in thorn vectors
by Roland Haas 17 Nov '21

17 Nov '21

#2518: retire BlueGene/Q support in thorn vectors Reporter: Roland Haas Status: new Milestone: Version: development version Type: task Priority: minor Component: Comment (by Roland Haas): As of [11/2020](https://www.top500.org/lists/top500/2020/11), Blue Joule no longer is updated in top500 -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2518/retire-bluegene-q…

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#2572: Build failure in PITTNullCode SphericalHarmonicReconGen
by Roland Haas 17 Nov '21

17 Nov '21

#2572: Build failure in PITTNullCode SphericalHarmonicReconGen Reporter: Wolfgang Kastaun Status: invalid Milestone: Version: ET_2021_05 Type: bug Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): status: invalid (was open) Comment (by Roland Haas): Cannot reproduce due to lack of arch Linux. Seems to be an issue in the Linux/GNU distro and not in the ET. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2572/build-failure-in-…

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#2571: runtime failure due to useing character*8 in DECLARE_CCTK_ARGUMENTS_CHECKED macro
by Roland Haas 17 Nov '21

17 Nov '21

#2571: runtime failure due to useing character*8 in DECLARE_CCTK_ARGUMENTS_CHECKED macro Reporter: Roland Haas Status: new Milestone: Version: development version Type: bug Priority: major Component: Cactus Changes (by Roland Haas): assignee: Roland Haas (was ) responsible: [] (was ) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2571/runtime-failure-d…

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#2551: include RePriMand in the ET
by Roland Haas 17 Nov '21

17 Nov '21

#2551: include RePriMand in the ET Reporter: Roland Haas Status: open Milestone: ET_2021_11 Version: development version Type: enhancement Priority: major Component: Comment (by Roland Haas): Please review. Pull request [https://github.com/wokast/RePrimAnd/pull/15](https://github.com/wokast/RePr… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2551/include-reprimand…

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#2571: runtime failure due to useing character*8 in DECLARE_CCTK_ARGUMENTS_CHECKED macro
by Roland Haas 17 Nov '21

17 Nov '21

#2571: runtime failure due to useing character*8 in DECLARE_CCTK_ARGUMENTS_CHECKED macro Reporter: Roland Haas Status: new Milestone: Version: development version Type: bug Priority: major Component: Cactus Comment (by Roland Haas): Please review. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2571/runtime-failure-d…

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#2571: runtime failure due to useing character*8 in DECLARE_CCTK_ARGUMENTS_CHECKED macro
by Roland Haas 17 Nov '21

17 Nov '21

#2571: runtime failure due to useing character*8 in DECLARE_CCTK_ARGUMENTS_CHECKED macro Reporter: Roland Haas Status: new Milestone: Version: development version Type: bug Priority: major Component: Cactus Comment (by Roland Haas): Pull request is here: [https://bitbucket.org/cactuscode/cactus/pull-requests/131/cactus-define-cus… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2571/runtime-failure-d…

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#2551: include RePriMand in the ET
by Roland Haas 17 Nov '21

17 Nov '21

#2551: include RePriMand in the ET Reporter: Roland Haas Status: open Milestone: ET_2021_11 Version: development version Type: enhancement Priority: major Component: Comment (by Roland Haas): The deep freeze for the release is going to be very soon. The documentation should go into `public` as soon as possible. Please also take a look at the review comments. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2551/include-reprimand…

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#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no"
by Gabriele Bozzola 17 Nov '21

17 Nov '21

#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no" Reporter: Gabriele Bozzola Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Gabriele Bozzola): It’s the opposite: it is the con2prim that does non-con2prim things. My workaround to achieve what I want is to change \`Tmunubase\` -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2497/illinoisgrmhd-is-…

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#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no"
by Roland Haas 17 Nov '21

17 Nov '21

#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no" Reporter: Gabriele Bozzola Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Part of the issue may be that ILGRMHD’s Tmunu code actually does non-Tmunu things namely con2prim as far as I remember. So not scheduling the Tmunu routines is not possible. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2497/illinoisgrmhd-is-…

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#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no"
by Gabriele Bozzola 17 Nov '21

17 Nov '21

#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no" Reporter: Gabriele Bozzola Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Gabriele Bozzola): Upon further inspection, the PR does not solve the problem. The group `SetTmunu` is not added to the scheduler when `TmunuBase::stress_energy_at_RHS = "no"` I don’t know how to fix this in a clean and easy way. The scheduler looks like this ``` GROUP HydroBase_Con2Prim: Convert from conservative to primitive variables GROUP SetTmunu: Group for calculating the stress-energy tensor TmunuBase::TmunuBase_ZeroTmunu: Initialise the stress-energy tensor to zero GROUP AddToTmunu: Add to the stress-energy tensor here IllinoisGRMHD::IllinoisGRMHD_conserv_to_prims: Compute primitive variables from conservatives. This is non-trivial, requiring a Newton-Raphson root-finder. IllinoisGRMHD::IllinoisGRMHD_outer_boundaries_on_P_rho_b_vx_vy_vz: Apply outflow-only, flat BCs on {P,rho_b,vx,vy,vz}. Outflow only == velocities pointed inward from outer boundary are set to zero. ``` `IllinoisGRMHD` computes Tmunu when it is doing primitive-recovery \(in `IllinoisGRMHD_convser_to_prims`\), so, it has to be scheduled after `TmunuBase_ZeroTmunu`. However, the group `SetTmunu` does not exist at all when \``TmunuBase::stress_energy_at_RHS = "no"` -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2497/illinoisgrmhd-is-…

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#2576: `after` statements in scheduler in `IllinoisGRMHD`
by Roland Haas 17 Nov '21

17 Nov '21

#2576: `after` statements in scheduler in `IllinoisGRMHD` Reporter: Gabriele Bozzola Status: new Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Roland Haas): Non existent functions in an `AFTER` or `BEFORE` \(and also `IN`\) clause in `schedule.ccl` are allowed in Cactus.They can for example be defined by thorns that are not included in the thornlist \(and may be private\). Eg `BSSN_RegisterVars` may be of that type. However your list also contains some that would seem to be in IllinoisGRMHD itself so their exclusion looks like a bug to me. Assigning to the ILGRMHD author \(and maintainer\) @{557058:8bc23f2a-45c0-477d-8ac4-a5a16c734278} -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2576/after-statements-…

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#2576: `after` statements in scheduler in `IllinoisGRMHD`
by Roland Haas 17 Nov '21

17 Nov '21

#2576: `after` statements in scheduler in `IllinoisGRMHD` Reporter: Gabriele Bozzola Status: new Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn Changes (by Roland Haas): assignee: Zach Etienne (was ) responsible: [] (was ) -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2576/after-statements-…

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#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no"
by Gabriele Bozzola 16 Nov '21

16 Nov '21

#2497: IllinoisGRMHD is incompatible with setting TmunuBase::stress_energy_at_RHS = "no" Reporter: Gabriele Bozzola Status: open Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn Comment (by Gabriele Bozzola): A opened a PR \([https://bitbucket.org/zach\_etienne/wvuthorns/pull-requests/8/fix-2497](https://bitbucket.org/zach_etienne/wvuthorns/pull-requests/8/fix-2497)\) which should fix this problem. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2497/illinoisgrmhd-is-…

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#2576: `after` statements in scheduler in `IllinoisGRMHD`
by Gabriele Bozzola 16 Nov '21

16 Nov '21

#2576: `after` statements in scheduler in `IllinoisGRMHD` Reporter: Gabriele Bozzola Status: new Milestone: Version: development version Type: bug Priority: major Component: EinsteinToolkit thorn In fixing #2497, I found that several `after` statements in the `schedule.ccl` of `IllinoisGRMHD` \(but probably also `GiRaFFE`\) are ill-defined \(or I don't know how the scheduler works\). In particular, according to `grep`, the following groups do not exist in the `Einstein Toolkit`: * `BSSN_RegisterVars` * `lapse_RegisterVars` * `Lapse_InitSymBound` * `empostid` * `lapsepostid` * `p2c` * `bssn_rhs` * `shift_rhs` * `compute_B_postrestrict` * `mhd_conserv2prims_postrestrict` * `outer_boundaries_on_A_mu` \(probably this one should be `IllinoisGRMHD_outer_boundaries_on_A_mu`\) * `compute_B_and_Bstagger_from_A` \(probably this one should be `IllinoisGRMHD_compute_B_and_Bstagger_from_A`\) In addition to this: * `IllinoisGRMHD_compute_B_and_Bstagger_from_A` is scheduled in `HydroBase_Boundaries`, but then `IllinoisGRMHD_conserv_to_prims` to be after `compute_B_and_Bstagger_from_A`, but it is scheduled in another group \(originally `AddToTmunu`, but with my fix it is `SetTmunu`\), so I am not sure what’s the use of that `after` * `IllinoisGRMHD` does not define `READ/WRITE` statements ‌ -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2576/after-statements-…

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#2575: online thorn documentation only lists thorns active in thorn list
by Roland Haas 16 Nov '21

16 Nov '21

#2575: online thorn documentation only lists thorns active in thorn list Reporter: Roland Haas Status: new Milestone: ET_2021_11 Version: development version Type: bug Priority: major Component: EinsteinToolkit website The online thorn documentation at [https://www.einsteintoolkit.org/documentation/ThornGuide.php](https://www.e… only shows thorns that are enabled in the full thornlist \([einsteintoolkit.th](http://einsteintoolkit.th)\) which misses thorns that are part of the Einstein Toolkit but not enabled by default \(eg LORENE2, RePrimAnd\). The script that builds the documentation should be extended to build documentation for all thorns in arrangements rather than only those on the thornlist. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2575/online-thorn-docu…

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