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#2575: online thorn documentation only lists thorns active in thorn list
by Roland Haas 16 Nov '21

16 Nov '21

#2575: online thorn documentation only lists thorns active in thorn list Reporter: Roland Haas Status: new Milestone: ET_2021_11 Version: development version Type: bug Priority: major Component: EinsteinToolkit website The online thorn documentation at [https://www.einsteintoolkit.org/documentation/ThornGuide.php](https://www.e… only shows thorns that are enabled in the full thornlist $[einsteintoolkit.th](http://einsteintoolkit.th)$ which misses thorns that are part of the Einstein Toolkit but not enabled by default $eg LORENE2, RePrimAnd$. The script that builds the documentation should be extended to build documentation for all thorns in arrangements rather than only those on the thornlist. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2575/online-thorn-docu…

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#2551: include RePriMand in the ET
by Roland Haas 12 Nov '21

12 Nov '21

#2551: include RePriMand in the ET Reporter: Roland Haas Status: open Milestone: ET_2021_11 Version: development version Type: enhancement Priority: major Component: Comment (by Roland Haas): Sphinx’s LaTeX output is produces broken LaTeX for me: ``` ! Extra alignment tab has been changed to \cr. <template> }$\hfill \endtemplate l.2819 ... \epsilon}(\rho, \theta, Y_e)\end{split} ``` This with RePrimAnd hash [6ec1def](https://github.com/wokast/RePrimAnd/commits/6ec1defa01d91a4df0f648… "Merge pull request #13 from rhaas80/public" of [RePrimAnd](https://github.com/wokast/RePrimAnd) sphinx 4.2.0-5, doxygen 1.9.1 on my Debian bookworm box. There seems to be no way to produce LaTeX output in sphinx that could be included in the Cactus documentation.tex file $ie that does not include the document preamble and documentclass$. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2551/include-reprimand…

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#2551: include RePriMand in the ET
by Roland Haas 12 Nov '21

12 Nov '21

#2551: include RePriMand in the ET Reporter: Roland Haas Status: open Milestone: ET_2021_11 Version: development version Type: enhancement Priority: major Component: Comment (by Roland Haas): Pull request with minimal docs is here: [https://github.com/wokast/RePrimAnd/pull/15](https://github.com/wokast/RePr… Pull request with review comments is here: [https://github.com/wokast/RePrimAnd/pull/14](https://github.com/wokast/RePr… Comments not in source code: * the HDF5 files in EOS will not be visible to the user right now $they are in the tarball but not copied anywhere where the user can find them$. Should they be? * the Python script to create HDF5 EOS files should be provided in exe/sim/foo.py ‌ -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2551/include-reprimand…

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#2574: alias patterns for BlueWaters and frontera conflict
by Roland Haas 07 Nov '21

07 Nov '21

#2574: alias patterns for BlueWaters and frontera conflict Reporter: Roland Haas Status: new Milestone: Version: ET_2021_05 Type: bug Priority: major Component: SimFactory Comment (by Roland Haas): Applied as git hash [db9c2090](https://bitbucket.org/simfactory/simfactory2/commits/db9c2090cd58… "Frontera: use full hostname in aliaspattern" of [simfactory2](https://bitbucket.org/simfactory/simfactory2) ‌ -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2574/alias-patterns-fo…

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#2574: alias patterns for BlueWaters and frontera conflict
by Gabriele Bozzola 07 Nov '21

07 Nov '21

#2574: alias patterns for BlueWaters and frontera conflict Reporter: Roland Haas Status: new Milestone: Version: ET_2021_05 Type: bug Priority: major Component: SimFactory Comment (by Gabriele Bozzola): It works. You can also add the ^ in front. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2574/alias-patterns-fo…

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#2574: alias patterns for BlueWaters and frontera conflict
by Roland Haas 07 Nov '21

07 Nov '21

#2574: alias patterns for BlueWaters and frontera conflict Reporter: Roland Haas Status: new Milestone: Version: ET_2021_05 Type: bug Priority: major Component: SimFactory Comment (by Roland Haas): If you could change aliaspattern to: ``` aliaspattern = login[1234]\.frontera\.tacc\.utexas\.edu$ ``` ie remove the `(...)?` optional marker, then check if `./simfactory/bin/sim whoami` still reports frontera then we can update the machine definition file to avoid the confusion due to identical login node hostnames in different cluster domains. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2574/alias-patterns-fo…

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#2574: alias patterns for BlueWaters and frontera conflict
by Gabriele Bozzola 07 Nov '21

07 Nov '21

#2574: alias patterns for BlueWaters and frontera conflict Reporter: Roland Haas Status: new Milestone: Version: ET_2021_05 Type: bug Priority: major Component: SimFactory Comment (by Gabriele Bozzola): `hostname -f` returns `login4.frontera.tacc.utexas.edu` on Frontera. I can test any other change if you want so. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2574/alias-patterns-fo…

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#2574: alias patterns for BlueWaters and frontera conflict
by Roland Haas 05 Nov '21

05 Nov '21

#2574: alias patterns for BlueWaters and frontera conflict Reporter: Roland Haas Status: new Milestone: Version: ET_2021_05 Type: bug Priority: major Component: SimFactory Comment (by Roland Haas): The missing `^` has been added to master in git hash [2207d60b](https://bitbucket.org/simfactory/simfactory2/commits/2207d60bb8b2… "Frontera: add missing beginning of string anchor to alias pattern" of [simfactory2](https://bitbucket.org/simfactory/simfactory2) and ET\_2021\_05 in git hash [88a28cf6](https://bitbucket.org/simfactory/simfactory2/commits/88a28cf67062… "Frontera: add missing beginning of string anchor to alias pattern" of [simfactory2](https://bitbucket.org/simfactory/simfactory2) . Cursory testing indicates that for Stampede2 one can use the FQDN for the alias pattern. I have no access to Frontera but expect the same to be true there as well $same computing center, same pattern of names$. On BlueWaters on the other hand even `hostname -f` just returns `h2ologin[1234]` so the domain name of the alias pattern should be removed since it is never use $but the hostnames alone are already sufficiently unique$. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2574/alias-patterns-fo…

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#2574: alias patterns for BlueWaters and frontera conflict
by Roland Haas 05 Nov '21

05 Nov '21

#2574: alias patterns for BlueWaters and frontera conflict Reporter: Roland Haas Status: new Milestone: Version: ET_2021_05 Type: bug Priority: major Component: SimFactory Both Blue Waters and Frontera define somewhat lenient regular expressions to match for their respective login nodes. Namely: ``` aliaspattern = ^h2ologin[1-4](\.ncsa\.illinois\.edu)?$ ``` and ``` aliaspattern = login[1234](\.frontera\.tacc\.utexas\.edu)?$ ``` In particular Frontera’s is too lenient since it misses the `^` anchor to anchor the regex to the beginning of the string making it match any node whose name contains `login[1234]`. This was encountered in real live by Cheng-Hsin Cheng while testing the BBH gallery example on BlueWaters. This confuses `sim setup` $and `setup-silent`$ but does apparently not face `sim whoami`, which on Blue Waters at least returns `bluewaters`. Possibly b/c Blue Waters is alphabetically first. There are two things that should be fixed by: 1. add a `^` to the alias pattern for Frontera 2. check whether one can leave in the FQDN instead of just the hostname itself since `login` since a fairly typical $if annoyingly generic$ hostname $eg Stampede2, also TACC, uses the same name$. 3. simfactory should warn / abort if more than one machine definition files aliaspattern matches I think $unless the pattern is emtpy, which we use for “alternative” machine definition files$. Should be backported. -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2574/alias-patterns-fo…

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#2176: Test "Binary neutron star" example
by Roland Haas 05 Nov '21

05 Nov '21

#2176: Test "Binary neutron star" example Reporter: Roland Haas Status: open Milestone: ET_2021_11 Version: development version Type: task Priority: major Component: EinsteinToolkit website Comment (by Roland Haas): Gabriele Bozzola provided some hints on how one could use kuibit $see there$ instead of VisIt for the movies: [https://bitbucket.org/einsteintoolkit/tickets/issues/2538/inclusion-of-kuib… -- Ticket URL: https://bitbucket.org/einsteintoolkit/tickets/issues/2176/test-binary-neutr…

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