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[Einstein Toolkit] #1281: SimFactory should expire its executable cache
by Einstein Toolkit 05 Mar '13

05 Mar '13

#1281: SimFactory should expire its executable cache ------------------------+--------------------------------------------------- Reporter: hinder | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- SimFactory stores executables in a CACHE directory in basedir. This directory seems to grow without limit. I just discovered that I had 73 GB of executables in there. SimFactory should probably delete anything older than a few weeks. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1281> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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Re: [ET Trac] [Einstein Toolkit] #30: Implement a "get" command
by Einstein Toolkit 05 Mar '13

05 Mar '13

#30: Implement a "get" command --------------------------+------------------------------------------------- Reporter: hinder | Owner: mthomas Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Resolution: | Keywords: --------------------------+------------------------------------------------- Comment (by hinder): There is a tool called "h5check" (http://www.hdfgroup.org/products/hdf5_tools/h5check.html) which checks hdf5 files for consistency. It is probably too slow to run this on every transfer, but this would be the most robust solution. I have just encountered an HDF5 file which gives no errors with h5ls but fails an h5check. This file was being written when I ran out of quota. h5dump also fails, on all the datasets I have tried in the file, so I expect the file is not usable due to the header being corrupted. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/30#comment:8> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1280: include warning in "No files created in test directory" test system output if no extensions were registered
by Einstein Toolkit 04 Mar '13

04 Mar '13

#1280: include warning in "No files created in test directory" test system output if no extensions were registered -------------------------+-------------------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: test system | -------------------------+-------------------------------------------------- The test system finds out about which files to compile by merging all EXTENSIONS options from all thorns. If none are registered it just reports "no files were generated" since no files match the patterns. It might be useful to include a hint "Did you add file extensions in any test.ccl file?" in the test system output. This issue can arise if for example only some tests are transferred to a cluster or one inserts test cases into a source tree from a formaline tarball (to verify if that particular code would still pass the test). The tests then appear to all pass since 0 out of 0 files compare identical. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1280> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1278: Handle inf and nan in parameter file parser
by Einstein Toolkit 03 Mar '13

03 Mar '13

#1278: Handle inf and nan in parameter file parser ----------------------+----------------------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: minor | Milestone: Component: Cactus | Version: Keywords: | ----------------------+----------------------------------------------------- The test case in CactusTest/TestPar fails because inf is not recognised as number. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1278> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1262: simfactory doesn't know how to handle 'old' simulations
by Einstein Toolkit 02 Mar '13

02 Mar '13

#1262: simfactory doesn't know how to handle 'old' simulations ------------------------+--------------------------------------------------- Reporter: knarf | Owner: eschnett Type: defect | Status: new Priority: major | Milestone: ET_2013_05 Component: SimFactory | Version: development version Keywords: | ------------------------+--------------------------------------------------- Trying to restart a simulation after an update of simfactory I get {{{ $ sim submit A3_oct --procs=256 Assigned restart id: 2 Traceback (most recent call last): File "/home/knarf/utils/simfactory/bin/../lib/sim.py", line 148, in <module> main() File "/home/knarf/utils/simfactory/bin/../lib/sim.py", line 144, in main CommandDispatch() File "/home/knarf/utils/simfactory/bin/../lib/sim.py", line 106, in CommandDispatch module.main() File "/home/knarf/utils/simfactory/lib/sim-manage.py", line 397, in main CommandDispatch() File "/home/knarf/utils/simfactory/lib/sim-manage.py", line 376, in CommandDispatch exec("command_%s()" % command) File "<string>", line 1, in <module> File "/home/knarf/utils/simfactory/lib/sim-manage.py", line 267, in command_submit restart.userSubmit(simulationName) File "/home/knarf/utils/simfactory/lib/simrestart.py", line 353, in userSubmit self.submit(submitScript) File "/home/knarf/utils/simfactory/lib/simrestart.py", line 590, in submit (nodes, ppn_used, procs, ppn, procs_requested, num_procs, num_threads, num_smt) = simlib.GetProcs(existingProperties) File "/home/knarf/utils/simfactory/lib/simlib.py", line 834, in GetProcs num_smt = existingProperties.numsmt AttributeError: SimProperties instance has no attribute 'numsmt' }}} -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1262> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1274: python trace instead of error message when simulation name is missing
by Einstein Toolkit 01 Mar '13

01 Mar '13

#1274: python trace instead of error message when simulation name is missing ------------------------+--------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- Doing: {{{ simfactory/bin/sim create-submit --configuration bns_all --parfile ~/scratch/cactus/mhd/MBondi_B1.51253333333333_Mdot1_Sch_Highres.par --procs 16 --walltime 4:0:0 }}} results in {{{ Traceback (most recent call last): File "simfactory/bin/../lib/sim.py", line 148, in ? main() File "simfactory/bin/../lib/sim.py", line 144, in main CommandDispatch() File "simfactory/bin/../lib/sim.py", line 106, in CommandDispatch module.main() File "/panfs/ds06/sxs/rhaas/shc/cactus/Zelmani/simfactory/lib/sim- manage.py", line 397, in main CommandDispatch() File "/panfs/ds06/sxs/rhaas/shc/cactus/Zelmani/simfactory/lib/sim- manage.py", line 376, in CommandDispatch exec("command_%s()" % command) File "<string>", line 1, in ? File "/panfs/ds06/sxs/rhaas/shc/cactus/Zelmani/simfactory/lib/sim- manage.py", line 151, in command_create_submit simulationName = simenv.OptionsManager.args.pop(0) IndexError: pop from empty list }}} rather than some more useful error message that no simulation name was specified. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1274> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1273: hdf5 index files created for checkpoints not deleted
by Einstein Toolkit 28 Feb '13

28 Feb '13

#1273: hdf5 index files created for checkpoints not deleted -----------------------------------------+---------------------------------- Reporter: wolfgang.kastaun@… | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: Carpet | Version: ET_2012_11 Keywords: | -----------------------------------------+---------------------------------- I recently evolved with activated hdf5 index file creation, using the Oersted release. I notice that also for checkpoint files the index files are saved, but in contrast to the checkpoint files themselves, the old index files are never deleted. I had more than 25000 checkpoint index files accumulated in my simulation directory ! -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1273> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1269: use XARGS configuration variable
by Einstein Toolkit 27 Feb '13

27 Feb '13

#1269: use XARGS configuration variable --------------------+------------------------------------------------------- Reporter: knarf | Owner: knarf Type: defect | Status: new Priority: minor | Milestone: ET_2013_05 Component: Cactus | Version: development version Keywords: | --------------------+------------------------------------------------------- The attached patch let's Cactus use a define variable XARGS, much like others (e.g., TAR). This is necessary on systems where the default xargs program cannot be used (e.g., pandora.hpc.lsu.edu). The patch also let's the flesh use this variable, making it compile on these machines. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1269> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1139: Adding PeriodicCarpet to the Einstein Toolkit
by Einstein Toolkit 26 Feb '13

26 Feb '13

#1139: Adding PeriodicCarpet to the Einstein Toolkit -------------------------+-------------------------------------------------- Reporter: bentivegna | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: Component: Carpet | Version: development version Keywords: | -------------------------+-------------------------------------------------- Old thorn Periodic does not behave correctly with AMR patches that overlap the periodic boundaries (see ticket #694). A significantly different mechanism to handle has been implemented, by Erik, in LSUThorns/PeriodicCarpet. This thorn should be added to the Einstein Toolkit, and slowly replace Periodic. Before introducing this thorn to the ET, we need at least one testcase with AMR. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1139> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1268: Cross-references in reference manual should be easier
by Einstein Toolkit 25 Feb '13

25 Feb '13

#1268: Cross-references in reference manual should be easier -------------------------+-------------------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: Cactus | Version: Keywords: | -------------------------+-------------------------------------------------- The cross references in the reference manual look like: {{{ \begin{SeeAlso2}{CCTK\_VError}{CCTK-VError} prints an error message with a variable argument list \end{SeeAlso2} }}} This is cumbersome, because the function description needs to be repeated. Instead, a simple pointer to the function should suffice. If this is not possible directly in latex, then we may want to use a different mechanism (e.g. Doxygen?). -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1268> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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