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[Einstein Toolkit] #1169: add LAPACK_LIB_DIRS and LAPACK_INC_DIRS option to LAPACK
by Einstein Toolkit 06 Nov '12

06 Nov '12

#1169: add LAPACK_LIB_DIRS and LAPACK_INC_DIRS option to LAPACK -----------------------------------+---------------------------------------- Reporter: rhaas | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: LAPACK | -----------------------------------+---------------------------------------- the attached patch adds options similar to MPI's options of the same name to LAPACK. They are useful when using the C interface and requiring access to the include file since the LAPACK included in mkl (like MPI) has "non- standard" directory layout. Also historically LAPACK_DIR specifies /usr/lib whereas eg. HDF5_DIR or GSL_DIR specify /usr . The patch does not change this later behaviour. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1169> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1119: hdf5toascii_slicer should output variable names in headers
by Einstein Toolkit 06 Nov '12

06 Nov '12

#1119: hdf5toascii_slicer should output variable names in headers -------------------------+-------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: Component: Carpet | Version: Keywords: | -------------------------+-------------------------------------------------- CarpetIOASCII currently puts something like {{{ # data columns: 13:rho }}} into its headers. hdf5toascii_slicer does not. It would be useful if the relavant code was copied into the slicer (from outputslice.cc). Particularly useful if one translates a checkpoint file to ASCII to inspect values in detail. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1119> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1168: simfactory rev 1677 fail to start on lonestar
by Einstein Toolkit 06 Nov '12

06 Nov '12

#1168: simfactory rev 1677 fail to start on lonestar ------------------------+--------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: defect | Status: new Priority: blocker | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- It seems as if {{{ module load TACC cuda cuda_SDK }}} fails with the warning {{{ }}} after which simfactory fails to continue. My suspicion is that cuda is not available for OpenMPI (which is the selected MPI stack) and the module then returns and error and simfactory aborts if the env command does not succeed. The output I get is: {{{ ==> qc0_cuda.err <== + cd /work/00945/rhaas/ET_trunk + /work/00945/rhaas/ET_trunk/simfactory/bin/sim run qc0_cuda --machine=lonestar --restart-id=0 Inactive Modules: 1) cuda 2) cuda_SDK Lmod Warning: Did not find: cuda cuda_SDK Try: "module spider cuda cuda_SDK" ==> qc0_cuda.out <== TACC: Setting memory limits for job 842190 to unlimited KB TACC: Dumping job script: -------------------------------------------------------------------------------- #! /bin/bash #$ -A TG-PHY100033 #$ -q normal #$ -r n #$ -l h_rt=0:15:00 #$ -pe 2way 36 #$ #$ -V #$ -N qc0_cuda-0000 #$ -M rhaas #$ -m abe #$ -o /scratch/00945/rhaas/simulations/qc0_cuda/output-0000/qc0_cuda.out #$ -e /scratch/00945/rhaas/simulations/qc0_cuda/output-0000/qc0_cuda.err set -x cd /work/00945/rhaas/ET_trunk /work/00945/rhaas/ET_trunk/simfactory/bin/sim run qc0_cuda --machine=lonestar --restart-id=0 -------------------------------------------------------------------------------- TACC: Done. Simulation name: qc0_cuda Running simulation qc0_cuda Mon Nov 5 23:03:27 CST 2012 Simfactory Done at date: 0 TACC: Cleaning up after job: 842190 TACC: Done. }}} Removing this command from envsetup lets me run. However since I do not run CUDA (the commit claims OpenCL which also seems wrong), does someone who uses OpenCL/CUDA on lonestar want to suggest an alternative? -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1168> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1167: Thorns with missing release branches
by Einstein Toolkit 06 Nov '12

06 Nov '12

#1167: Thorns with missing release branches -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: defect | Status: new Priority: blocker | Milestone: ET_2012_11 Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- The OpenCL related thorns do not have release branches: Summary of Warnings: Could not checkout module CactusExamples/WaveToyOpenCL svn: E170000: URL 'https://svn.cactuscode.org/arrangements/CactusExamples/WaveToyOpenCL/branch…' doesn't exist Could not checkout module CactusUtils/Accelerator svn: E170000: URL 'https://svn.cactuscode.org/arrangements/CactusUtils/Accelerator/branches/ET…' doesn't exist Could not checkout module CactusUtils/OpenCLRunTime svn: E170000: URL 'https://svn.cactuscode.org/arrangements/CactusUtils/OpenCLRunTime/branches/…' doesn't exist Could not checkout module ExternalLibraries/OpenCL svn: E170000: URL 'https://svn.cactuscode.org/projects/ExternalLibraries/OpenCL/branches/ET_20…' doesn't exist Time Elapsed: 3 minutes, 20 seconds -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1167> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1165: Vector test fails with intel12 compilers on my laptop
by Einstein Toolkit 05 Nov '12

05 Nov '12

#1165: Vector test fails with intel12 compilers on my laptop -----------------------------------+---------------------------------------- Reporter: diener | Owner: Type: defect | Status: new Priority: blocker | Milestone: ET_2012_11 Component: EinsteinToolkit thorn | Version: development version Keywords: | -----------------------------------+---------------------------------------- One of the vector tests fail on my laptop with the intel12 compilers. Erik provided that attached patch that fixed the problem. Erik has applied the patch to the main branch but it needs to be back ported to the release branch. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1165> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1166: Add non-vectorised test cases
by Einstein Toolkit 05 Nov '12

05 Nov '12

#1166: Add non-vectorised test cases -----------------------------------+---------------------------------------- Reporter: eschnett | Owner: Type: enhancement | Status: new Priority: major | Milestone: Component: EinsteinToolkit thorn | Version: Keywords: | -----------------------------------+---------------------------------------- We should add test cases without vectorisation to the Einstein Toolkit. We should test both configurations that set VECTORISE=no, and thorns that have been generated via Kranc without vectorisation. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1166> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1163: Test cases with specific number of processes
by Einstein Toolkit 02 Nov '12

02 Nov '12

#1163: Test cases with specific number of processes -------------------------+-------------------------------------------------- Reporter: rhaas | Owner: eschnett Type: enhancement | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -------------------------+-------------------------------------------------- Simfactory needs support for #1075. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1163> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1157: simfactory option list for Mac OSX
by Einstein Toolkit 01 Nov '12

01 Nov '12

#1157: simfactory option list for Mac OSX -----------------------------+---------------------------------------------- Reporter: pf289@… | Owner: eschnett Type: defect | Status: new Priority: minor | Milestone: Component: SimFactory | Version: Keywords: | -----------------------------+---------------------------------------------- In the option list for osx-lion-macports-gcc.cfg it says that one should have installed the following macports: szip, gcc46, fftw, fftw-3, gsl, openssl, hdf5-18 +gcc46 -universal, zlib, openmpi +gcc46 With these ports installed, the following compiler error occurs: ld: library not found for -lhdf5hl_fortran collect2: ld returned 1 exit status make[1]: *** [/Users/paufigueras/Universitat/Cactus/exe/cactus_testconfig] Error 1 make: *** [testconfig] Error 2 To fix it, one should install the hdf5 port with the fortran variant. In other words, in the ports list above one should replace: hdf5-18 +gcc46 -universal -> hdf5-18 +fortran +gcc46 -universal -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1157> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #663: thornlists within Cactus should get cleaned up
by Einstein Toolkit 01 Nov '12

01 Nov '12

#663: thornlists within Cactus should get cleaned up -------------------------+-------------------------------------------------- Reporter: knarf | Owner: Type: enhancement | Status: new Priority: minor | Milestone: Component: Cactus | Version: development version Keywords: | -------------------------+-------------------------------------------------- Most of the thornlists in https://svn.cactuscode.org/Utilities/trunk/Thornlist* are out of date, and should get cleaned up. -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/663> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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[Einstein Toolkit] #1150: Simfactory: it doesn't honor --procs when running testsuites
by Einstein Toolkit 31 Oct '12

31 Oct '12

#1150: Simfactory: it doesn't honor --procs when running testsuites ------------------------+--------------------------------------------------- Reporter: bmundim | Owner: eschnett Type: defect | Status: new Priority: major | Milestone: Component: SimFactory | Version: Keywords: | ------------------------+--------------------------------------------------- I have entered the following command: sim create-submit trestles__2_8 --testsuite --procs 2 --num-threads 8 but trestles__2_8/output-0000/SIMFACTORY/RunScript only sets -np 1: ${MPICHDIR}/bin/mpirun_rsh -tv -np 1 -hostfile ${MPI_NODEFILE} /oasis/scratch/trestles/bcmundim/temp_project/simulations/trestles__2_8/SIMFACTORY/exe/cactus_sim -L 3 ${TESTSUITE_PARFILE} This may be related to bug #1075. Thanks! -- Ticket URL: <https://trac.einsteintoolkit.org/ticket/1150> Einstein Toolkit <http://einsteintoolkit.org> The Einstein Toolkit

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