Hi Roland et al.

I did a clean, from-scratch compilation after copying that 18.2.0 Darwin architecture file to 18.6.0.

Sadly, no change. Still fails at link time with all the "Undefined _H5xxxx" errors.

Bernard

On Thu, 20 Jun 2019 at 11:42, Haas, Roland rhaas@illinois.edu wrote:

Hello Bernard,

I am still in the process of trying to reproduce your error.

However one thing I noticed is that (yet again) Cactus needs a new architecture file (once for each Apple update) and reports that darwin 18.6.0 is not a known architecture. This may be part of the reason for failure.

You can fix this by doing:

cd repos/flesh/lib/make/known-architectures cp darwin18.2.0 darwin18.6.0

I have pushed such architecture files into both the release branch and master (just now).

Yours, Roland

...

Hi.

I just downloaded the current stable ET release --- ET_2019_03 --- and am trying a simple from-scratch compilation on my MacOS machine running Mojave with Macports-supplied packages.

I'm using the current osx-macports.cfg for my configuration, having installed the ports mentioned at the top of the file. What I'm seeing is a link-time failure involving the HDF5 libraries --- see below.

Are there extra configuration steps I should be taking? Thanks, Bernard

----------- error output at end of compilation --------

Undefined symbols for architecture x86_64:

"_H5Aclose", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,

int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  ...

"_H5Acreate1", referenced from:

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,

int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned

long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  ...

"_H5Aget_space", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Aget_type", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Aopen_name", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Aread", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Awrite", referenced from:

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,

int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned

long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  ...

"_H5Dclose", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Dcreate1", referenced from:

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Dextend", referenced from:

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

"_H5Dget_space", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

"_H5Dget_storage_size", referenced from:

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

"_H5Dget_type", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Dopen1", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

"_H5Dread", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

"_H5Dwrite", referenced from:

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Eauto_is_v2", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Eget_auto1", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Eget_auto2", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Eset_auto1", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Eset_auto2", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Fclose", referenced from:

  _CarpetIOHDF5_CloseFiles in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::CloseFile(_cGH const*, long long&, long

long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Fcreate", referenced from:

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 0> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 1> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 2> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Fis_hdf5", referenced from:

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 0> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 1> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 2> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 3> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

"_H5Fopen", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 0> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 1> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Gclose", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteMetadata(_cGH const*, int, int, int, bool,

long long) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5Gcreate1", referenced from:

  CarpetIOHDF5::WriteMetadata(_cGH const*, int, int, int, bool,

long long) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5Gget_objinfo", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

"_H5Giterate", referenced from:

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Gopen1", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Gunlink", referenced from:

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5P_CLS_DATASET_CREATE_ID_g", referenced from:

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5P_CLS_DATASET_XFER_ID_g", referenced from:

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5P_CLS_FILE_ACCESS_ID_g", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 0> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Pclose", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Pcreate", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Pget_edc_check", referenced from:

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Pset_chunk", referenced from:

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Pset_deflate", referenced from:

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Pset_edc_check", referenced from:

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Pset_fapl_core", referenced from:

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

"_H5Pset_fclose_degree", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::OpenFile(_cGH const*, int, int, int,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, CarpetLib::vect<int, 0> const&, bool, bool, long long&, long long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Pset_filter", referenced from:

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Pset_shuffle", referenced from:

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<3>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 3> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 1> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Sclose", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,

int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  ...

"_H5Screate", referenced from:

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  AHFinderDirect::WriteAttribute(long long, char const*, char

const*, int) [clone .constprop.195] in libthorn_AHFinderDirect.a(patch_system.cc.o)

"_H5Screate_simple", referenced from:

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,

int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned

long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Sget_select_npoints", referenced from:

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Sget_simple_extent_dims", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

"_H5Sget_simple_extent_ndims", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Sget_simple_extent_npoints", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Sselect_hyperslab", referenced from:

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 2> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5T_C_S1_g", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  AHFinderDirect::WriteAttribute(long long, char const*, char

const*, int) [clone .constprop.195] in libthorn_AHFinderDirect.a(patch_system.cc.o)

"_H5T_NATIVE_DOUBLE_g", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*)   in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5T_NATIVE_FLOAT_g", referenced from:

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*)   in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5T_NATIVE_HSIZE_g", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, unsigned

long long const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

"_H5T_NATIVE_INT16_g", referenced from:

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5T_NATIVE_INT32_g", referenced from:

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5T_NATIVE_INT64_g", referenced from:

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5T_NATIVE_INT8_g", referenced from:

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5T_NATIVE_INT_g", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int const*,

int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

"_H5T_NATIVE_LDOUBLE_g", referenced from:

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*)   in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5T_NATIVE_SCHAR_g", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5Tclose", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5Tcopy", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  AHFinderDirect::WriteAttribute(long long, char const*, char

const*, int) [clone .constprop.195] in libthorn_AHFinderDirect.a(patch_system.cc.o)

"_H5Tcreate", referenced from:

  CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*)   in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5Tget_class", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

"_H5Tget_size", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteVarChunkedSequential(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarChunkedParallel(_cGH const*, long long,

double&, ioRequest const*, bool, long long) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  CarpetIOHDF5::IOHDF5<0>::WriteHDF5(_cGH const*, long long&, long

long&, std::vector<CarpetLib::gdata*, std::allocatorCarpetLib::gdata* >, CarpetLib::bbox<int, 3> const&, int, CarpetLib::vect<int, 3> const&, CarpetLib::vect<int, 0> const&, int, int, int, int, int, int, double, CarpetLib::vect<double, 3> const&, CarpetLib::vect<double, 3> const&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5Tinsert", referenced from:

  CarpetIOHDF5::SetupGH(tFleshConfig*, int, _cGH*)   in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

"_H5Tset_size", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, char const*

const*, int) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteLargeAttribute(long long, char const*, char

const*) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::AddAttributes(_cGH const*, char const*, int, int,

ioRequest const*, CarpetLib::bbox<int, 3> const&, long long, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  AHFinderDirect::WriteAttribute(long long, char const*, char

const*, int) [clone .constprop.195] in libthorn_AHFinderDirect.a(patch_system.cc.o)

"_H5check_version", referenced from:

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  Multipole_OutputComplexToH5File(_cGH*, Multipole::variable_desc

const*, double const*, Multipole::mode_array const&) in libthorn_Multipole.a(utils.cc.o)

  CarpetIOHDF5::WriteVarUnchunked(_cGH const*, long long, double&,

ioRequest const*, bool) in libthorn_CarpetIOHDF5.a(Output.cc.o)

  ...

"_H5garbage_collect", referenced from:

  _CarpetIOHDF5_CloseFiles in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Checkpoint(_cGH const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::OutputVarAs(_cGH const*, char const*, char const*)

in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::IOHDF5<0>::CloseFile(_cGH const*, long long&, long

long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<1>::CloseFile(_cGH const*, long long&, long

long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  CarpetIOHDF5::IOHDF5<2>::CloseFile(_cGH const*, long long&, long

long&) in libthorn_CarpetIOHDF5.a(OutputSlice.cc.o)

  ...

"_H5open", referenced from:

  CarpetIOHDF5::BrowseDatasets(long long, char const*, void*) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::OpenFileSet(_cGH const*,

std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char const*, int) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::ReadVar(_cGH const*, CarpetIOHDF5::file_t&,

double&, std::_List_const_iteratorCarpetIOHDF5::patch_t, std::vector<CarpetLib::bboxset2::bboxset<int, 3>, std::allocator<CarpetLib::bboxset2::bboxset<int, 3> > >&, bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::Recover(_cGH*, char const*, int) in

libthorn_CarpetIOHDF5.a(Input.cc.o)

  CarpetIOHDF5::CCTKtoHDF5_Datatype(_cGH const*, int, bool) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, int) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  CarpetIOHDF5::WriteAttribute(long long, char const*, double) in

libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)

  ...

ld: symbol(s) not found for architecture x86_64

collect2: error: ld returned 1 exit status

make[1]: *** [/Users/bjkelly1/nobackup/codes/Cactus/exe/cactus_sim] Error 1

make: *** [sim] Error 2

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

Hi Roland.

Here's the result of uname -a:

Darwin gs66-dodder 18.6.0 Darwin Kernel Version 18.6.0: Thu Apr 25 23:16:27 PDT 2019; root:xnu-4903.261.4~2/RELEASE_X86_64 x86_64

Attached is the full list of installed ports (a bit longer than yours)

Bernard

On Thu, 20 Jun 2019 at 12:44, Haas, Roland rhaas@illinois.edu wrote:

Hello Bernard,

...

I did a clean, from-scratch compilation after copying that 18.2.0 Darwin architecture file to 18.6.0.

Sadly, no change. Still fails at link time with all the "Undefined _H5xxxx" errors.

Ok. Since it starts with at "_" I almost suspected it may be some Fortran binding but then it is being called from C++ code.

My own test is still compiling (slow VM).

Could you include the output of:

• sudo port installed
• uname -a

I have included my own output to give you an idea of what I am looking for (note that I cannot tell yet if compiling in my VM will encounter the same error you see).

Yours, Roland

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

Hi Roland, everyone:

I just came back to this problem in the last day or two, and with some experimentation, I fixed it by adding the following lines to my config-info ---that is, to simfactory/mdb/optionlists/osx-macports.cfg:

HDF5_INC_DIRS=/opt/local/include HDF5_LIBS=hdf5 hdf5_cpp hdf5_hl HDF5_LIB_DIRS=/opt/local/lib

That is, it wasn't enough to just say "HDF5_DIR=/opt/local"

Hope this helps if someone else runs into problems (and thanks for the help getting here),

Bernard

On Fri, 21 Jun 2019 at 14:20, Haas, Roland rhaas@illinois.edu wrote:

Hello Bernard,

unfortunately (or fortunately) it linked fine for me. No errors were reported.

Looking at the installed ports I also cannot see anything strange.

I am not sure what else I could now do to help debug this. Possibly some other package that you have installed is interfering or there is some environment variable set?

Yours, Roland

...

Hi Roland.

Here's the result of uname -a:

Darwin gs66-dodder 18.6.0 Darwin Kernel Version 18.6.0: Thu Apr 25 23:16:27 PDT 2019; root:xnu-4903.261.4~2/RELEASE_X86_64 x86_64

Attached is the full list of installed ports (a bit longer than yours)

Bernard

On Thu, 20 Jun 2019 at 12:44, Haas, Roland rhaas@illinois.edu wrote:

...

Hello Bernard,

...

I did a clean, from-scratch compilation after copying that 18.2.0 Darwin architecture file to 18.6.0.

Sadly, no change. Still fails at link time with all the "Undefined _H5xxxx" errors.

Ok. Since it starts with at "_" I almost suspected it may be some Fortran binding but then it is being called from C++ code.

My own test is still compiling (slow VM).

Could you include the output of:

• sudo port installed
• uname -a

I have included my own output to give you an idea of what I am looking for (note that I cannot tell yet if compiling in my VM will encounter the same error you see).

Yours, Roland

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

Hi Roland.

No, my locally set environment variables are few, and don't include anything to do with HDF5.

Bernard

On Tue, 2 Jul 2019 at 17:46, Haas, Roland rhaas@illinois.edu wrote:

Hello Bernard,

thank you for the update. Glad that you could find a workaround.

These should not be needed as the scripts in ExternalLibraries/HDF5 are supposed to figure these out based on just HDF5_DIR (and possible pkgconfig files though MacPorts does not always deliver those).

We had issues in the past where there were environment variables HDF5_DIR (though never anything else really) defined in a user's environment (for example from a environment module on a cluster) and, due to the way make works, these take precedence over values in the optionlists.

Can you check if you enter

env | grep HDF5

if anything shows up, please? In particular a HDF5_DIR would likely fool the automatic detection but as long as you *also* have the HDF5_INC/LIB/BLAH variables set, then HDF5_DIR is (almost, b/c it is used to find things like h5ls) not needed.

Yours, Roland

...

Hi Roland, everyone:

I just came back to this problem in the last day or two, and with some experimentation, I fixed it by adding the following lines to my config-info ---that is, to simfactory/mdb/optionlists/osx-macports.cfg:

HDF5_INC_DIRS=/opt/local/include HDF5_LIBS=hdf5 hdf5_cpp hdf5_hl HDF5_LIB_DIRS=/opt/local/lib

That is, it wasn't enough to just say "HDF5_DIR=/opt/local"

Hope this helps if someone else runs into problems (and thanks for the help getting here),

Bernard

On Fri, 21 Jun 2019 at 14:20, Haas, Roland rhaas@illinois.edu wrote:

...

Hello Bernard,

unfortunately (or fortunately) it linked fine for me. No errors were reported.

Looking at the installed ports I also cannot see anything strange.

I am not sure what else I could now do to help debug this. Possibly some other package that you have installed is interfering or there is some environment variable set?

Yours, Roland

...

Hi Roland.

Here's the result of uname -a:

Darwin gs66-dodder 18.6.0 Darwin Kernel Version 18.6.0: Thu Apr 25 23:16:27 PDT 2019; root:xnu-4903.261.4~2/RELEASE_X86_64 x86_64

Attached is the full list of installed ports (a bit longer than yours)

Bernard

On Thu, 20 Jun 2019 at 12:44, Haas, Roland rhaas@illinois.edu wrote:

...

Hello Bernard,

...

I did a clean, from-scratch compilation after copying that 18.2.0 Darwin architecture file to 18.6.0.

Sadly, no change. Still fails at link time with all the "Undefined _H5xxxx" errors.

Ok. Since it starts with at "_" I almost suspected it may be some Fortran binding but then it is being called from C++ code.

My own test is still compiling (slow VM).

Could you include the output of:

• sudo port installed
• uname -a

I have included my own output to give you an idea of what I am looking for (note that I cannot tell yet if compiling in my VM will encounter the same error you see).

Yours, Roland

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .

-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://keys.gnupg.net.