Hello Villani,
just before the error at the end you can see a couple of lines:
--8<-- [...] CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !
CST error 44: -> Thorn 'WatchDog' requires the capability 'PTHREADS'. Please add a thorn that provides 'PTHREADS' to your ThornList or remove 'WatchDog' from it ! --8<--
and at the beginning of that list of errors you can see the following:
--8<-- ------------------------------------------------------ Warnings were generated during execution of the CST ------------------------------------------------------
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/BLAS
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/FFTW3
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/GSL --8<-- indicating that some modules (thorns) could not be downloaded and are missing.
Those missing are downloaded using subversion (using the svn command) and possibly you are missing it.
Steve already asked this, but can you double check that you ran the command (all in one line):
sudo apt-get install -y libjpeg-turbo?-dev gcc git liblapack-dev make subversion g++ libpapi-dev libhwloc-dev libopenmpi-dev libhdf5-openmpi-dev libssl-dev numactl gfortran libhdf5-dev libfftw3-dev patch rsync libgsl-dev pkg-config
and that
svn --version
works?
If that works, can you please provide the log files generated by:
cd $HOME ./GetComponents --update ./einsteintoolkit.th &>GetComponents.log
and
svn info https://github.com/einsteintoolkit/ExternalLibraries-GSL.git &>svn.log
ie the two files GetComponents.log and svn.log .
Yours, Roland
Villani,
This is what I saw in your files as well. To me, this says your checkout didn't work. What was the output of your call to GetComponents?
--Steve
On 9/25/2019 6:12 AM, Haas, Roland wrote:
Hello Villani,
just before the error at the end you can see a couple of lines:
--8<-- [...] CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !
CST error 44: -> Thorn 'WatchDog' requires the capability 'PTHREADS'. Please add a thorn that provides 'PTHREADS' to your ThornList or remove 'WatchDog' from it ! --8<--
and at the beginning of that list of errors you can see the following:
--8<--
Warnings were generated during execution of the CST
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/BLAS
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/FFTW3
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/GSL --8<-- indicating that some modules (thorns) could not be downloaded and are missing.
Those missing are downloaded using subversion (using the svn command) and possibly you are missing it.
Steve already asked this, but can you double check that you ran the command (all in one line):
sudo apt-get install -y libjpeg-turbo?-dev gcc git liblapack-dev make subversion g++ libpapi-dev libhwloc-dev libopenmpi-dev libhdf5-openmpi-dev libssl-dev numactl gfortran libhdf5-dev libfftw3-dev patch rsync libgsl-dev pkg-config
and that
svn --version
works?
If that works, can you please provide the log files generated by:
cd $HOME ./GetComponents --update ./einsteintoolkit.th &>GetComponents.log
and
svn info https://github.com/einsteintoolkit/ExternalLibraries-GSL.git &>svn.log
ie the two files GetComponents.log and svn.log .
Yours, Roland
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
svn --version says:
svn, version 1.10.6 (r1863367)
compiled Aug 26 2019, 08:36:15 on x86_64-unknown-linux-gnu
Copyright (C) 2019 The Apache Software Foundation.
This software consists of contributions made by many people;
see the NOTICE file for more information.
Subversion is open source software, see http://subversion.apache.org/
Sono disponibili i seguenti moduli di accesso (RA) al repository:
* ra_svn : Modulo per accedere ad un repository tramite il protocollo di rete svn.
- gestisce lo schema 'svn'
* ra_local : Modulo per accedere ad un repository sul disco locale.
- gestisce lo schema 'file'
The following authentication credential caches are available:
* Plaintext cache in /home/mattia/.subversion
* GPG-Agent
the long command says that everything is installed and updated.
I am encountering some problem emailing you: i have been trying for almost a week now and always got the message:
554 5.7.1 Service unavailable; Client host [209.85.221.47] blocked using dnsbl.sorbs.net; Currently Sending Spam See: http://www.sorbs.net/lookup.shtml?209.85.221.47
as a response.
Il 25/09/19 15:12, Haas, Roland ha scritto:
Hello Villani,
just before the error at the end you can see a couple of lines:
--8<-- [...] CST error 43: -> Thorn 'TwoPunctures_KerrProca' requires the capability 'GSL'. Please add a thorn that provides 'GSL' to your ThornList or remove 'TwoPunctures_KerrProca' from it !
CST error 44: -> Thorn 'WatchDog' requires the capability 'PTHREADS'. Please add a thorn that provides 'PTHREADS' to your ThornList or remove 'WatchDog' from it ! --8<--
and at the beginning of that list of errors you can see the following:
--8<--
Warnings were generated during execution of the CST
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/BLAS
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/FFTW3
CST error in /home/mattia/Cactus/lib/sbin/CST (at 376) -> Missing thorn ExternalLibraries/GSL --8<-- indicating that some modules (thorns) could not be downloaded and are missing.
Those missing are downloaded using subversion (using the svn command) and possibly you are missing it.
Steve already asked this, but can you double check that you ran the command (all in one line):
sudo apt-get install -y libjpeg-turbo?-dev gcc git liblapack-dev make subversion g++ libpapi-dev libhwloc-dev libopenmpi-dev libhdf5-openmpi-dev libssl-dev numactl gfortran libhdf5-dev libfftw3-dev patch rsync libgsl-dev pkg-config
and that
svn --version
works?
If that works, can you please provide the log files generated by:
cd $HOME ./GetComponents --update ./einsteintoolkit.th &>GetComponents.log
and
svn info https://github.com/einsteintoolkit/ExternalLibraries-GSL.git &>svn.log
ie the two files GetComponents.log and svn.log .
Yours, Roland
Hello Villani,
svn --version says:
svn, version 1.10.6 (r1863367)
Ok so at least subversion is installed.
the long command says that everything is installed and updated.
Did you also run the two commands
./GetComponents --update ./einsteintoolkit.th &>GetComponents.log
and
svn info https://github.com/einsteintoolkit/ExternalLibraries-GSL.git &>svn.log
producing the two files GetComponents.log and svn.log .
Could you please send me to two output files GetComponents.log and svn.log?
I have seen failures of this sort for svn (really openssl) versions that were too old since github will not accept any ssl connections from servers that are to using at least tls v 1.2. However your svn version seems sufficiently new that I would expect it to be linked against a new enough version of OpenSSL.
Can you let me know what version of Linux / OSX / Whatnot you are running?
On Linux you can try and use the command "lsb_release --all".
I am encountering some problem emailing you: i have been trying for almost a week now and always got the message:
554 5.7.1 Service unavailable; Client host [209.85.221.47] blocked using dnsbl.sorbs.net; Currently Sending Spam See: http://www.sorbs.net/lookup.shtml?209.85.221.47
as a response.
There is not much that I can do about this as this is a University wide spam filter. The IP address that is banned (209.85.221.47) seems to belong to Google (mail-wr1-f47.google.com). Are you trying to use Google to send emails? I would rather use your "regular" University account (and email server) which does not seem to be blocked. Sending emails just to users@einsteintoolkit.org is enough though, there is no actual need to CC me on it.
I will forward your blocked email message to the admins here as I would have hoped that GMail was not blocked since quite a number of US Universities actually run their (student) emails using Google's services.
Yours, Roland
users@lists.einsteintoolkit.org
-
Haas, Roland -
Steven R. Brandt -
Villani