Hello,
I'm having problems with CarpetMask when I attempt to build a simulation. Included are my error messages. Does anyone have any suggestions?
Preprocessing /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc Compiling /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc: In function ?void CarpetMask::CarpetSurfaceSetup(cGH*)?: /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: error: call of overloaded ?isnan(double&)? is ambiguous /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: error: call of overloaded ?isnan(double&)? is ambiguous /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) make[3]: *** [mask_surface.cc.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/joshua/Cactus/configs/ConfigName/lib/libthorn_CarpetMask.a] Error 2 make[1]: *** Waiting for unfinished jobs....
Sincerely,
Joshua Harris
Joshua
C++ compilers differ in their ways in which they make C functions such as isnan available. There is a standard way, but there are often also additional "backward compatible" ways, and this can sometimes lead to confusion. In your case, the C++ compiler sees two "different" versions of isnan and thus reports an error.
We have determined compiler options and header flags that make things work for almost all standard operating systems and standard compilers. We have documented these in the simulation factory http://simfactory.org, which can also be directly accessed at https://svn.cct.lsu.edu/repos/numrel/simfactory/branches/PYSIM_DEV/mdb/optionlists/.
What machine, operating system, and compiler are you using? Your best bet is probably to start with the options for a machine most closely to your setup.
-erik
On Wed, Jun 15, 2011 at 4:58 PM, jhar131@cct.lsu.edu wrote:
Hello,
I'm having problems with CarpetMask when I attempt to build a simulation. Included are my error messages. Does anyone have any suggestions?
Preprocessing /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc Compiling /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc: In function ?void CarpetMask::CarpetSurfaceSetup(cGH*)?: /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: error: call of overloaded ?isnan(double&)? is ambiguous /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: error: call of overloaded ?isnan(double&)? is ambiguous /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) make[3]: *** [mask_surface.cc.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/joshua/Cactus/configs/ConfigName/lib/libthorn_CarpetMask.a] Error 2 make[1]: *** Waiting for unfinished jobs....
Sincerely,
Joshua Harris
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
Erik,
I am using a 64 bit intel dual core laptop, with fedora 15 as the OS, I am compiling with gcc version 4.6.; and I am attempting to build a simulation with fedora.cfg.
Sincerely,
Joshua Harris
Quoting Erik Schnetter schnetter@cct.lsu.edu:
Joshua
C++ compilers differ in their ways in which they make C functions such as isnan available. There is a standard way, but there are often also additional "backward compatible" ways, and this can sometimes lead to confusion. In your case, the C++ compiler sees two "different" versions of isnan and thus reports an error.
We have determined compiler options and header flags that make things work for almost all standard operating systems and standard compilers. We have documented these in the simulation factory http://simfactory.org, which can also be directly accessed at https://svn.cct.lsu.edu/repos/numrel/simfactory/branches/PYSIM_DEV/mdb/optionlists/.
What machine, operating system, and compiler are you using? Your best bet is probably to start with the options for a machine most closely to your setup.
-erik
On Wed, Jun 15, 2011 at 4:58 PM, jhar131@cct.lsu.edu wrote:
Hello,
I'm having problems with CarpetMask when I attempt to build a simulation. Included are my error messages. Does anyone have any suggestions?
Preprocessing /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc Compiling /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc: In function ?void CarpetMask::CarpetSurfaceSetup(cGH*)?: /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: error: call of overloaded ?isnan(double&)? is ambiguous /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: error: call of overloaded ?isnan(double&)? is ambiguous /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double) /usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) make[3]: *** [mask_surface.cc.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/joshua/Cactus/configs/ConfigName/lib/libthorn_CarpetMask.a] Error 2 make[1]: *** Waiting for unfinished jobs....
Sincerely,
Joshua Harris
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/
Joshua
Can you check that the option -std=gnu++0x is part of CXXFLAGS in your fedora.cfg?
Did you install gcc46 yourself, or as Fedora package?
It is difficult to debug this remotely. Your problem seems to be that both the C and the C++ versions of isnan are visible at the same time, the C version in the global namespace and the C++ version in the std namespace.
A quick work-around would be to commend out the calls to isnan in this file. These calls to isnan check only for errors, so you should be fine.
-erik
On Thu, Jun 16, 2011 at 10:34 AM, jhar131@cct.lsu.edu wrote:
Erik,
I am using a 64 bit intel dual core laptop, with fedora 15 as the OS, I am compiling with gcc version 4.6.; and I am attempting to build a simulation with fedora.cfg.
Sincerely,
Joshua Harris
Quoting Erik Schnetter schnetter@cct.lsu.edu:
Joshua
C++ compilers differ in their ways in which they make C functions such as isnan available. There is a standard way, but there are often also additional "backward compatible" ways, and this can sometimes lead to confusion. In your case, the C++ compiler sees two "different" versions of isnan and thus reports an error.
We have determined compiler options and header flags that make things work for almost all standard operating systems and standard compilers. We have documented these in the simulation factory http://simfactory.org, which can also be directly accessed at
https://svn.cct.lsu.edu/repos/numrel/simfactory/branches/PYSIM_DEV/mdb/optionlists/.
What machine, operating system, and compiler are you using? Your best bet is probably to start with the options for a machine most closely to your setup.
-erik
On Wed, Jun 15, 2011 at 4:58 PM, jhar131@cct.lsu.edu wrote:
Hello,
I'm having problems with CarpetMask when I attempt to build a simulation. Included are my error messages. Does anyone have any suggestions?
Preprocessing /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc Compiling /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc: In function ?void CarpetMask::CarpetSurfaceSetup(cGH*)?:
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: error: call of overloaded ?isnan(double&)? is ambiguous
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float)
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: error: call of overloaded ?isnan(double&)? is ambiguous
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) make[3]: *** [mask_surface.cc.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/joshua/Cactus/configs/ConfigName/lib/libthorn_CarpetMask.a] Error 2 make[1]: *** Waiting for unfinished jobs....
Sincerely,
Joshua Harris
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/
Erik,
-std=gnu++0x is part of the CXXFLAGS in fedora.cfg, and I installed gcc46 using the yum -y command as mentioned in the fedora.cfg comments. Your suggested workaround was successful.
Josh Harris
Quoting Erik Schnetter schnetter@cct.lsu.edu:
Joshua
Can you check that the option -std=gnu++0x is part of CXXFLAGS in your fedora.cfg?
Did you install gcc46 yourself, or as Fedora package?
It is difficult to debug this remotely. Your problem seems to be that both the C and the C++ versions of isnan are visible at the same time, the C version in the global namespace and the C++ version in the std namespace.
A quick work-around would be to commend out the calls to isnan in this file. These calls to isnan check only for errors, so you should be fine.
-erik
On Thu, Jun 16, 2011 at 10:34 AM, jhar131@cct.lsu.edu wrote:
Erik,
I am using a 64 bit intel dual core laptop, with fedora 15 as the OS, I am compiling with gcc version 4.6.; and I am attempting to build a simulation with fedora.cfg.
Sincerely,
Joshua Harris
Quoting Erik Schnetter schnetter@cct.lsu.edu:
Joshua
C++ compilers differ in their ways in which they make C functions such as isnan available. There is a standard way, but there are often also additional "backward compatible" ways, and this can sometimes lead to confusion. In your case, the C++ compiler sees two "different" versions of isnan and thus reports an error.
We have determined compiler options and header flags that make things work for almost all standard operating systems and standard compilers. We have documented these in the simulation factory http://simfactory.org, which can also be directly accessed at
https://svn.cct.lsu.edu/repos/numrel/simfactory/branches/PYSIM_DEV/mdb/optionlists/.
What machine, operating system, and compiler are you using? Your best bet is probably to start with the options for a machine most closely to your setup.
-erik
On Wed, Jun 15, 2011 at 4:58 PM, jhar131@cct.lsu.edu wrote:
Hello,
I'm having problems with CarpetMask when I attempt to build a simulation. Included are my error messages. Does anyone have any suggestions?
Preprocessing /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc Compiling /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc /home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc: In function ?void CarpetMask::CarpetSurfaceSetup(cGH*)?:
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: error: call of overloaded ?isnan(double&)? is ambiguous
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:111:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float)
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: error: call of overloaded ?isnan(double&)? is ambiguous
/home/joshua/Cactus/arrangements/Carpet/CarpetMask/src/mask_surface.cc:128:19: note: candidates are: /usr/include/bits/mathcalls.h:235:1: note: int isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:558:3: note: bool std::isnan(long double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:554:3: note: bool std::isnan(double)
/usr/lib/gcc/x86_64-redhat-linux/4.6.0/../../../../include/c++/4.6.0/cmath:550:3: note: bool std::isnan(float) make[3]: *** [mask_surface.cc.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/home/joshua/Cactus/configs/ConfigName/lib/libthorn_CarpetMask.a] Error 2 make[1]: *** Waiting for unfinished jobs....
Sincerely,
Joshua Harris
Users mailing list Users@einsteintoolkit.org http://lists.einsteintoolkit.org/mailman/listinfo/users
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/
-- Erik Schnetter schnetter@cct.lsu.edu http://www.cct.lsu.edu/~eschnett/
users@lists.einsteintoolkit.org
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Erik Schnetter -
jhar131＠cct.lsu.edu