Roland,
That was it! Thank you!
Your talk Yesterday was really useful. Will you please share the link where I can find the Jupyter notebook you presented? For whatever reason, from https://etk.cct.lsu.edu/ I cannot access but 5 tutorials:
CactusTutorial-08-2020.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CactusTutorial-08-2020.ipynb
CactusTutorial.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CactusTutorial.ipynb
CreatingANewThorn-HeatEqn.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CreatingANewThorn-HeatEqn.ipynb
CreatingANewThorn-WaveEqn.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CreatingANewThorn-WaveEqn.ipynb
VisualizingOutput-WaveMoL.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/VisualizingOutput-WaveMoL.ipynb
thank you, Maria _______________________ Maria C. Babiuc Hamilton, Ph.D. Professor, Department of Physics College of Science, Marshall University, 1 John Marshall Drive, Huntington, WV, 25755 Room S 257, Phone: (304)696-2754
________________________________ From: Roland Haas Sent: Monday, August 3, 2020 12:09 PM To: Hamilton, Maria Cc: users@einsteintoolkit.org Subject: Re: [Users] Workshop
Hello Maria,
looks like the gcc-10/gfortran-10 issue to me.
Please note that if there is *any* gcc-10 installed then simfactory will pick it up and use it.
(copied from responses of mine to the same question on the users mailing list earlier):
--8<-- Then please see here for a workaround:
https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinstein...
https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinstein...
basically by adding -fcommon and -fallow-argument-mismatch to the compiler flags.
The tutorial notebook
https://github.com/nds-org/jupyter-et/blob/master/CactusTutorial.ipynb
also contains information on the workaround.
A proper fix is ready to be deployed to the released code but we were holding off until after the workshop to not accidentally introduce more (unknown) issues on top of the one for which we have a workaround.
To fix this you can edit the file
configs/sim/OptionList
and also (the path might be a bit fuzzy):
simfactory/mdb/optionlists/generic-mp-10.cfg
and replace all gcc-10, g++-10 and gfortran-10 by the -9 flavors or by adding the -fXXX options that I had mentioned before.
Afterwards you will have to run:
simfactory/bin/sim build --reconfig
which will instruct simfactory to update the build options using the values in configs/sim/OptionList . --8<--
Yours, Roland
Hi,
I have an error when running the commands from the Jupyter tutorial on my Mac laptop, on terminal: ___
There was 1 error during execution of the CST
This must be corrected before compilation can proceed
Warnings were generated during execution of the CST
CST error 1:
-> Configuration script for thorn LAPACK returned exit code 2
(no error message)
make[1]: *** [/Users/babiuc/ETK2020/Cactus/configs/sim/config-data/make.thornlist] Error 1
When I am trying to run the commands from the Jupyter notebook, the error is in LoopControl: ____
COMPILING Carpet/LoopControl/src/type_sizes.F90 /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:57:33:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_space_t)/TYPE(lc_vec_t)). /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:57:60:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_space_t)/TYPE(lc_vec_t)). /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:58:33:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) 58 | type_sizes(3) = CCTK_PointerTo(control(2)) - CCTK_PointerTo(control(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_control_t)/TYPE(lc_vec_t)). /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:58:62:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) 58 | type_sizes(3) = CCTK_PointerTo(control(2)) - CCTK_PointerTo(control(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_control_t)/TYPE(lc_vec_t)). make[3]: *** [type_sizes.F90.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/Users/babiuc/ETK2020/Cactus/configs/sim/lib/libthorn_LoopControl.a] Error 2 make[1]: *** Waiting for unfinished jobs.... COMPILING configs/sim/bindings/build/SpaceMask/cctk_ThornBindings.c Creating /Users/babiuc/ETK2020/Cactus/configs/sim/lib/libthorn_SpaceMask.a make: *** [sim] Error 2
This is with gcc-10.
Maria _______________________ Maria C. Babiuc Hamilton, Ph.D. Professor, Department of Physics College of Science, Marshall University, 1 John Marshall Drive, Huntington, WV, 25755 Room S 257, Phone: (304)696-2754
From: users-bounces@einsteintoolkit.org users-bounces@einsteintoolkit.org on behalf of Roland Haas rhaas@illinois.edu Sent: Monday, August 3, 2020 10:02 AM To: users@einsteintoolkit.org users@einsteintoolkit.org Subject: Re: [Users] Workshop
Hello Bilal,
Dear Sir, Is the workshop started? any Link for the workshop?
https://lsu.zoom.us/j/92731656466
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
Hello Maria,
you can find my notebook on the tutorial server in the /etc/skel directory and copy it to your own $HOME on the server by adding this:
%%bash cp /etc/skel/UsingTheCactusReductionInterface.ipynb ~/
to a tutorial notebook (or use just the "cp" command in a terminal or use "!cp ..." in a regular notebook where %%bash may not exist).
or you can download the notebook from my github account:
https://github.com/rhaas80/etlsu2020-reduction
I expect that we will collect all notebooks and talks slides and provide them for download after the workshop.
Yours, Roland
Roland,
That was it! Thank you!
Your talk Yesterday was really useful. Will you please share the link where I can find the Jupyter notebook you presented? For whatever reason, from https://etk.cct.lsu.edu/ I cannot access but 5 tutorials:
CactusTutorial-08-2020.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CactusTutorial-08-2020.ipynb
CactusTutorial.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CactusTutorial.ipynb
CreatingANewThorn-HeatEqn.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CreatingANewThorn-HeatEqn.ipynb
CreatingANewThorn-WaveEqn.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/CreatingANewThorn-WaveEqn.ipynb
VisualizingOutput-WaveMoL.ipynbhttps://etk.cct.lsu.edu/user/babiuc/notebooks/VisualizingOutput-WaveMoL.ipynb
thank you, Maria _______________________ Maria C. Babiuc Hamilton, Ph.D. Professor, Department of Physics College of Science, Marshall University, 1 John Marshall Drive, Huntington, WV, 25755 Room S 257, Phone: (304)696-2754
From: Roland Haas Sent: Monday, August 3, 2020 12:09 PM To: Hamilton, Maria Cc: users@einsteintoolkit.org Subject: Re: [Users] Workshop
Hello Maria,
looks like the gcc-10/gfortran-10 issue to me.
Please note that if there is *any* gcc-10 installed then simfactory will pick it up and use it.
(copied from responses of mine to the same question on the users mailing list earlier):
--8<-- Then please see here for a workaround:
https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinstein...
https://linkprotect.cudasvc.com/url?a=https%3a%2f%2fbitbucket.org%2feinstein...
basically by adding -fcommon and -fallow-argument-mismatch to the compiler flags.
The tutorial notebook
https://github.com/nds-org/jupyter-et/blob/master/CactusTutorial.ipynb
also contains information on the workaround.
A proper fix is ready to be deployed to the released code but we were holding off until after the workshop to not accidentally introduce more (unknown) issues on top of the one for which we have a workaround.
To fix this you can edit the file
configs/sim/OptionList
and also (the path might be a bit fuzzy):
simfactory/mdb/optionlists/generic-mp-10.cfg
and replace all gcc-10, g++-10 and gfortran-10 by the -9 flavors or by adding the -fXXX options that I had mentioned before.
Afterwards you will have to run:
simfactory/bin/sim build --reconfig
which will instruct simfactory to update the build options using the values in configs/sim/OptionList . --8<--
Yours, Roland
Hi,
I have an error when running the commands from the Jupyter tutorial on my Mac laptop, on terminal: ___
There was 1 error during execution of the CST
This must be corrected before compilation can proceed
Warnings were generated during execution of the CST
CST error 1:
-> Configuration script for thorn LAPACK returned exit code 2
(no error message)
make[1]: *** [/Users/babiuc/ETK2020/Cactus/configs/sim/config-data/make.thornlist] Error 1
When I am trying to run the commands from the Jupyter notebook, the error is in LoopControl: ____
COMPILING Carpet/LoopControl/src/type_sizes.F90 /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:57:33:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_space_t)/TYPE(lc_vec_t)). /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:57:60:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_space_t)/TYPE(lc_vec_t)). /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:58:33:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) 58 | type_sizes(3) = CCTK_PointerTo(control(2)) - CCTK_PointerTo(control(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_control_t)/TYPE(lc_vec_t)). /Users/babiuc/ETK2020/Cactus/configs/sim/build/LoopControl/type_sizes.f90:58:62:
56 | type_sizes(1) = CCTK_PointerTo(vec(2)) - CCTK_PointerTo(vec(1)) | 2 57 | type_sizes(2) = CCTK_PointerTo(space(2)) - CCTK_PointerTo(space(1)) 58 | type_sizes(3) = CCTK_PointerTo(control(2)) - CCTK_PointerTo(control(1)) | 1 Error: Type mismatch between actual argument at (1) and actual argument at (2) (TYPE(lc_control_t)/TYPE(lc_vec_t)). make[3]: *** [type_sizes.F90.o] Error 1 make[2]: *** [make.checked] Error 2 make[1]: *** [/Users/babiuc/ETK2020/Cactus/configs/sim/lib/libthorn_LoopControl.a] Error 2 make[1]: *** Waiting for unfinished jobs.... COMPILING configs/sim/bindings/build/SpaceMask/cctk_ThornBindings.c Creating /Users/babiuc/ETK2020/Cactus/configs/sim/lib/libthorn_SpaceMask.a make: *** [sim] Error 2
This is with gcc-10.
Maria _______________________ Maria C. Babiuc Hamilton, Ph.D. Professor, Department of Physics College of Science, Marshall University, 1 John Marshall Drive, Huntington, WV, 25755 Room S 257, Phone: (304)696-2754
From: users-bounces@einsteintoolkit.org users-bounces@einsteintoolkit.org on behalf of Roland Haas rhaas@illinois.edu Sent: Monday, August 3, 2020 10:02 AM To: users@einsteintoolkit.org users@einsteintoolkit.org Subject: Re: [Users] Workshop
Hello Bilal,
Dear Sir, Is the workshop started? any Link for the workshop?
https://lsu.zoom.us/j/92731656466
Yours, Roland
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
-- My email is as private as my paper mail. I therefore support encrypting and signing email messages. Get my PGP key from http://pgp.mit.edu .
users@lists.einsteintoolkit.org
-
Hamilton, Maria -
Roland Haas